BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00890.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895931 jgi|Araly1|895931|Al_scaffold_0006_3927 427 9e-119
> Ahg895931 jgi|Araly1|895931|Al_scaffold_0006_3927
Length=2073
Score = 427 bits (231), Expect = 9e-119
Identities = 291/320 (91%), Gaps = 4/320 (1%)
Strand=Plus/Plus
Query 185 TGTCGCCGTTATCACCAAAATCAAAGGAAGAGCCTGAATCACAGACAATGACACCACTGA 244
||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||
Sbjct 272 TGTCGCCGTTATCACCAAAATCAAAGGAAGAGCCTCAATCGCAGCCAATGCCACCACTGA 331
Query 245 TGTCAAAACATGTCAAAACACATCGAAACCTTCTTATCCAATCACCACCTAAGTCGCCGC 304
||||||||||||||||||||| || || || |||||||||||||| |||||||||||||
Sbjct 332 CGTCAAAACATGTCAAAACACACCGGAATCTACTTATCCAATCACCTCCTAAGTCGCCGC 391
Query 305 CAGAATCCACTGAATCTCAGCAGCAATTTCTAGCATCAGTGCCTCTTCGACCGCTAACAA 364
||||||||||| |||||||||||||||| |||||||| ||||||| || ||||||||||
Sbjct 392 CAGAATCCACTAAATCTCAGCAGCAATTACTAGCATCGGTGCCTCCTCCACCGCTAACAC 451
Query 365 CAGAACCAAAAACACCATTGTCCCCCTCGTCAACCCTAAAGGCTACCGAAGAATCTCAGT 424
||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 452 CAGAAGCAAAAACACCATTGTCCCCCTCGTCAACGCTAAAGTCTACCGAAGAATCTCAGT 511
Query 425 CCCAACCGTCTCCACCGCTTGAATCTATCGTTGAAACTTGGTTCCGA-CCATCGCCTCCA 483
|||||||||||||||||||| ||||||| | |||||| |||||| | ||||||||||||
Sbjct 512 CCCAACCGTCTCCACCGCTTAAATCTATTGACGAAACTCGGTTCC-ATCCATCGCCTCCA 570
Query 484 ACATCAACAGAAA-CTGGTG 502
|||||| || ||| ||||||
Sbjct 571 ACATCATCA-AAATCTGGTG 589
Score = 207 bits (112), Expect = 1e-52
Identities = 142/157 (90%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 752 AATCTGATAAACAAGCAAGATCTCAGACACACTCATCACCATCACCACCGCCACTGTTGT 811
||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 1544 AATCTGATAAACAAGCAAGATCTCAGACACACTCATCACCACCAGCAACGCCATTGTTGT 1603
Query 812 CGCCGAAAGCTAGTGAAAACCACCAATCTAAATCACCTATGCCACCACCATCTCCGACGG 871
| ||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 1604 CTCCGAAAGCTAGTGAAAACCACCAATATCAATCACCTATGCCACCACCATCTCTGACGG 1663
Query 872 CACAGATATCACTATCGTCTCTGAAATCACCAATTCC 908
||||| |||| |||| | ||||||||||||||||
Sbjct 1664 AACAGAGGTCACCATCGCCGATGAAATCACCAATTCC 1700
Score = 132 bits (71), Expect = 8e-30
Identities = 126/152 (83%), Gaps = 5/152 (3%)
Strand=Plus/Plus
Query 525 ACCACCACAAGAAGCCAAAACTCCACCGTCTTCGCCGTCAATGATGTTAAACGCTACTGA 584
||| |||| |||||| ||| | || || || ||||||| || | ||||||||| ||
Sbjct 1065 ACCGCCACCAGAAGCTAAAGTTACATCGCCTCCGCCGTC---GACGCAAAACGCTACAGA 1121
Query 585 AGAATTCGAGTCCCAACCGAAACCACCGCTTTTGCCGTCTAAATCCATAGACGAAACTCG 644
| ||| | || |||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 1122 AAAATCCCAGCCCCAACTGCCACCACCGCTTTTGCCATCTAAATCCATAGACGAAACTCG 1181
Query 645 GCTCCGATCACCGCTT-ATGTCGCAAGCATCG 675
|||||||||||||||| | |||||||||||||
Sbjct 1182 GCTCCGATCACCGCTTCA-GTCGCAAGCATCG 1212
Score = 126 bits (68), Expect = 4e-28
Identities = 151/187 (81%), Gaps = 21/187 (11%)
Strand=Plus/Plus
Query 969 ACCGTCACCTAAACCATCGTTACCCCAAATTGAACCTAACCAAA-TCAAATCTCCTTCTC 1027
||||||||||||||||| | ||||||||||| ||||||| |||| ||||||||||| |||
Sbjct 1731 ACCGTCACCTAAACCATTGGTACCCCAAATTAAACCTAA-CAAAGTCAAATCTCCTCCTC 1789
Query 1028 CAAAACTCACAAACACCGAATCTCACGCTTCACCAG---------A-G--------CAGA 1069
||||||| | ||||| |||||||||| ||||||||| | | || |
Sbjct 1790 CAAAACTTATAAACAACGAATCTCACACTTCACCAGATCATAAAAAGGATCAAAACCACA 1849
Query 1070 ATCTAGTGAAACCTGACGCCAACCTCATGAACAAGATTCCGGCTAAAAACGAAGTTCCGA 1129
||| || ||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||
Sbjct 1850 ATCCAGAGAAACCTGACGCCAACCTCATGAACAAGAATCCGCCTAAAAATGAAGTTCAGA 1909
Query 1130 AAAACAG 1136
||| |||
Sbjct 1910 AAA-CAG 1915
Score = 73.1 bits (39), Expect = 5e-12
Identities = 60/69 (87%), Gaps = 6/69 (9%)
Strand=Plus/Plus
Query 679 CCACCTCCTTTGCCGTCTAAATCCATTGATGAAAATGAAACAAGGTCCCAATCACCGCCG 738
||||| |||||||||||||||||||||||||||| | | ||||||||||||| |||
Sbjct 1429 CCACCGCCTTTGCCGTCTAAATCCATTGATGAAAC--A--C--GGTCCCAATCACCTCCG 1482
Query 739 ATTTCGCCA 747
|||||||||
Sbjct 1483 ATTTCGCCA 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5