BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00893.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895453 jgi|Araly1|895453|Al_scaffold_0006_3449 712 0.0
> Ahg895453 jgi|Araly1|895453|Al_scaffold_0006_3449
Length=702
Score = 712 bits (385), Expect = 0.0
Identities = 538/611 (88%), Gaps = 13/611 (2%)
Strand=Plus/Plus
Query 597 GCGATAAAGTTTG-TTCCGGGTGAGGTTAATCGTGTCACTGTCAGTACTTGCAATCCTGG 655
||||||||| ||| |||| || | | ||| | |||||||||||| |||||| |||||||
Sbjct 88 GCGATAAAG-TTGATTCC-GG-CA-GATAAACTTGTCACTGTCAGCACTTGCCATCCTGG 143
Query 656 AGCAACTAAATGGATTACT-AACGACTTCCCTACTTTTCTGAGATTGTTTTACATGCAAA 714
||||||| | ||||||||| || ||||||||||||||| | | | ||||||||||| ||
Sbjct 144 AGCAACTGAGTGGATTACTCAA-GACTTCCCTACTTTTATAAAACCGTTTTACATGCTAA 202
Query 715 GCAACCTTGTCTATCGGAGAGATCGATTCTATTGCTTTAACGCTGAAGGAACTTTGTATA 774
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 203 GCAACCTTGTCTATCGCAGAGATCGATTCTATTGCTTTAACGCAGAAGGAACTTTGTATA 262
Query 775 GCTTTGAACCATCTTATCGTGA-ATGGAGTTACATTTGTGCGGATAAACTCAGATGCCCG 833
||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||
Sbjct 263 ACTTTGAACCATCTCACCG-CACATGGAACTACATTTGTGCGGATAAACTCAGATGCCCG 321
Query 834 TATGTCCATGAGAA-CCAATATATGTGGTGTGGGAAAGCAGTTTTCTTGGTAGAGAAGAA 892
||| ||||| | || || ||| ||| | || || ||||||| |||||||||||||||
Sbjct 322 TATATCCAT-AAAATGCACTATGTGTTGAATGAGATAGCAGTTGCCTTGGTAGAGAAGAA 380
Query 893 AGGAGAGCTCTTTGTAATGTTTACATGTAGCAACGAGAAGCCAATGGTGTATAAACTATT 952
||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 381 AGGAGAGCTCTTTGTCATGTTTACATGCAGCAACCAGAAGCCAATGGTGTATAAACTATT 440
Query 953 CTCTATGAAGTGGAAGGAGTTGAGTAGGACAACACTTGATGGGATGACATTTTTTGTCAG 1012
|||| || |||||||||| ||| |||||||||||||||||| ||||| | ||||||||
Sbjct 441 CTCTTTGGAGTGGAAGGAAATGACTAGGACAACACTTGATGGCTTGACAATCTTTGTCAG 500
Query 1013 TTTTTATAACTCTGAGTTGAGGAA-TAATCTCCCATGGATGAGGAACAATGTCTATTTCT 1071
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 501 TTTTTATAACTCTGAGTTGA-GAATTAATCTCCCATGGATGAGGAACAATGTCTATTTCT 559
Query 1072 CAAGGTTTGGTTACAATCGCAAACATTGTGTTTCTTTTTCATTTGATGAAAGCAGGTACA 1131
|||||||||||||||| |||||||||||||| || | || |||||||||||||||||||
Sbjct 560 CAAGGTTTGGTTACAACCGCAAACATTGTGTATCCTACTCGTTTGATGAAAGCAGGTACA 619
Query 1132 ATACGCCTAAAGAATGGGAGCAATGGGTAGAACTTTGTCCTCCTCAAAGCCTTTGGATTG 1191
|| ||| ||| |||||||| ||||||||||||| ||||||||||||||||| ||||| |
Sbjct 620 ATCCGCGTAAGGAATGGGATAAATGGGTAGAACTCTGTCCTCCTCAAAGCCTATGGATCG 679
Query 1192 ATACGCCGAAG 1202
|||||||||||
Sbjct 680 ATACGCCGAAG 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5