BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00895.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490476 jgi|Araly1|490476|fgenesh2_kg.6__3610__AT4G00895.1 1142 0.0
Ahg947253 jgi|Araly1|947253|scaffold_703482.1 383 1e-105
> Ahg490476 jgi|Araly1|490476|fgenesh2_kg.6__3610__AT4G00895.1
Length=812
Score = 1142 bits (618), Expect = 0.0
Identities = 758/822 (92%), Gaps = 23/822 (3%)
Strand=Plus/Plus
Query 36 ATGGATACTCTCTCAGCATCCG-TT--TCATCCTTGAACCTCCCTTCTCTTCCTCCACCA 92
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATACTCTCTCAGCATCCGTTTCATCATCCTTGAACCTCCCTTCTCTTCCTCCACCG 60
Query 93 CCGCAGCCACCGTTGAGATCCATCTCCAGCCGCTTTAAATCCACCGTAAACGCCACCACT 152
||||| ||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 61 CCGCAACCACCGTTGAGATCCATCTCCCGCCGCTTTAAATCCAGCGCAAACGCCACCACT 120
Query 153 TCTGCTTCATCTACCAATCTTTCAAAACCAACATCGTCTTCACCTTCTTCAGCATCATAC 212
|||||| | ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 121 TCTGCTGCGTCTACCAATCTATCAAAACCAACATCGTCTTCACCTTCTT---CATCATAC 177
Query 213 TCACAGAACAGAAACCCTAATTTCCT-CAAAGCAATCTCGTTTCATCTTCCGCAAACGAA 271
|| || ||| ||||| |||||| || || |||||||||||||| ||||||| || ||
Sbjct 178 TCCCACCACAAAAACCTTAATTT-CTCCAGAGCAATCTCGTTTCCGGTTCCGCACACAAA 236
Query 272 ACCCTCGAGAGTTGTTACTCCTCCTCCTCCTCCGGTGCATGATAAAGCGGCCTCAGGGTT 331
|||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 237 ACCCTCTAGA---GTTACTCCTCCTCCTCCTCCGGTGCACGATAAAGCGGCCTCGGGGTT 293
Query 332 TGCTGCGGCGCTCGTTAGCGTTTGTCAATCGAAGAATTGTCTTGGTCGGACTCAAGAAGA 391
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 294 TGCTGCGGCGCTCGTTAGCGTTTGTCAATCGAAGAATTGCCTTGGTCGGACTCAAGAAGA 353
Query 392 TGTCAGAAGATTGATGGAGTTTCTTGTGGGAGAAGAAAAGAAGAGGAACAAGGTCTTAGT 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TGTCAGAAGATTGATGGAGTTTCTTGTGGGAGAAGAAAAGAAGAGGAACAAGGTCTTAGT 413
Query 452 CAATGATGTTGTTGAGAGAGGTAAATTTGGTAAACACTTCAAGGGCTTGGTCAAGATGTT 511
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 414 CAATGATGTTGTTGAGAGAGGTAAATTTGGTAAACACTTGAAGGGCTTGGTCAAGATGTT 473
Query 512 GATTGCAAGAGGTAAATCTGGGATTCTGGTGGATGTTTTAATGGAATTTGAGAGAATCTG 571
|||| |||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 474 GATTACAAGAGGTAAATCTGGGATTCTCGTTGATGTTTTAATGGAATTTCAGAGAATCTG 533
Query 572 TAATGAATTGGTCTCaaaaaaaCTTGTCTGGGTTTCTTGATGATACAAAAGATTATATCT 631
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TAATGAATTGGTCACAACAAAACTTGTCTGGGTTTCTTGATGATACAAAAGATTATATCT 593
Query 632 AATCCAAAGTTTGCTTCTTTA-A---GAAATGTTACACTACTTGTCTTTGGTTGATGTTT 687
||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 594 AATCCAAAGTTTGCTTCTTTACACAAGAAATGTTATACTACTTGTCTTTGGTTGATGTTT 653
Query 688 TAATGGAATCTGAGAGAATCTGTAATAAATTATTTGTTCTTGATGAAACAAAAGATTGTA 747
| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 654 TTATGGAATCTGAGAGAATCTGTAATAAATTGTTTGT-CT-GATGAAACAAAAGATTGTA 711
Query 748 AAAGAGATTATATCAAATCCAAAGTTTGATTTAGCTTCCACAAAGAATTTAAAAACAATA 807
|||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct 712 AAAGAGATTATATCTAATCCAAAGTTTGATTTTGCTTCCACAAAGAATTAAAAAACAACA 771
Query 808 AC---AGGTTA--ACTGTGTCTTTGGTTGAGGTTTCTTAATG 844
|| ||| ||||| |||||||||||| ||||||||||
Sbjct 772 GGTTTAG-TTACTACTGTCTCTTTGGTTGAGATTTCTTAATG 812
> Ahg947253 jgi|Araly1|947253|scaffold_703482.1
Length=328
Score = 383 bits (207), Expect = 1e-105
Identities = 283/316 (90%), Gaps = 20/316 (6%)
Strand=Plus/Plus
Query 398 AAGATTGATGGAGTTTCTTGTGGGAGAAGAAAAGAAGAGGAACAAGGTCTTAGTCAATGA 457
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 14 AAGATTGATGGAGTTTCTTGTGGGAGAAGAAAAGATGAGGAACAAGGTCTTAGTCAATGA 73
Query 458 TGTTGTTGAGAGAGGTAAATTTGGTAAACACTTCAAGGGCTTGGTCAAGATGTTGATTGC 517
||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 74 TGTTG---AGAGAGGTAAATTGGGTAAACACTTGAAGGGCTTGGTCAAGATGTTGATTAC 130
Query 518 AAGAGGTAAATCTGGGATTCTGGTGGATGTTTTAATGGAATTTGAGAGAATCTGTAATGA 577
||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 131 AAGAGGTAAATCTGGGATTCTCGTTGATGTTTTAATGGAATTTGAGAGAATCTGTACTGA 190
Query 578 ATTGGTCTCaaaaaaaCTT-GTCTGGGTTTCTTGATGATACAAAAGATT--A-------T 627
||||||| ||| ||||||| ||||||||||||||||||||||||||||| | |
Sbjct 191 ATTGGTCACAACAAAACTTTGTCTGGGTTTCTTGATGATACAAAAGATTGTAAAAGAGAT 250
Query 628 -AT--CTAATCCAAAGTTTGCTTCTTTA---A-GAAATGTTACACTACTTGTCTTTGGTT 680
|| |||||||||||||||||| |||| | ||||||||||||||||||||||| |||
Sbjct 251 CATATCTAATCCAAAGTTTGCTTATTTACTCAAGAAATGTTACACTACTTGTCTTTAGTT 310
Query 681 GATGTTTTAATGGAAT 696
||||||| |||||||
Sbjct 311 AATGTTTTTATGGAAT 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5