BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00905.1
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490474 jgi|Araly1|490474|fgenesh2_kg.6__3608__AT4G00905.1 1323 0.0
> Ahg490474 jgi|Araly1|490474|fgenesh2_kg.6__3608__AT4G00905.1
Length=845
Score = 1323 bits (716), Expect = 0.0
Identities = 804/847 (95%), Gaps = 4/847 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGTACTCACGAACAAAGTCGAGAGAGACGAGCTTAAACCTGGTGATCACATCTAC 60
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGTACTCACGAACAAGGTCGGGAGAGACGAGCTTAAACCTGGTGATCACATCTAC 60
Query 61 ACTTATCGAGCCGTCTTCGCTTATTCTCACCACGGCGTATTTGTTGGTGGTTGCAAAGTG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 ACTTATCGAGCCGTCTTCGCTTATTCTCACCACGGCGTATTTGTTGGTGGTTGCAAGGTG 120
Query 121 GTTCATTTCAAACCTGAGCACAGCTTGATATCTCCTACACTCGcttcttcttcttcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTCATTTCAAACCTGAGCACAGCTTGATATCTCCTACACTCGCTTCTTCTTCTTCTTCT 180
Query 181 tcgtcttcttcAGTTTCAGAGGTTAATGATTCTTCAGAAGCTCCTTGTCCTACATATCCT 240
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 TCTTCTTCTTCAGTTTCGGAGGTTAATGATTCTTCAGAAGCTCCTTGTCCTACATTTCCT 240
Query 241 GACTGTGGATATAAACGACCAAAGAGTGGAGTAGTACTTTCTTGCCTAGACTGCTTTCTC 300
|||||||| || |||| ||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 241 GACTGTGGTTACAAACAACCTAAGAGTGGAGTAGTACTTTCTTGCCTTGACTGTTTTCTC 300
Query 301 AAGAAAGGTTCTCTCTACCGTTTTGATTATGGAGTCAGCTCATCGATTTTCCTCACCAGA 360
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 301 AAGAAAGGTTCTCTTTACCGTTTCGAATATGGAGTCAGCTCATCGATTTTCCTCACCAGA 360
Query 361 TTCCGCGGTGGCACGTGCACAACTGCTCCATCTGACCCGCTTCAAACAGTCATCCATAGA 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 TTCCGCGGTGGCACGTGCACAACTGCTCCTTCTGACCCGCTTCAAACAGTCATCCATAGA 420
Query 421 GCAATGCACCTTCTCCAAAACGGATTTGGTAACTACAATGTCTTCCAGAATAACTGCGAA 480
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 421 GCAATGCACCTTCTCCAAAACGGATTTGGTAACTACGACGTCTTCCAGAATAACTGCGAA 480
Query 481 GATTTTGCTCTCTACTGCAAGACAGGATTGCTCATTCTGGATAAGAACGGGGTTGGGAGA 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GACTTTGCTCTCTACTGCAAGACAGGATTGCTCATTCTGGATAAGAACGGGGTTGGGAGA 540
Query 541 AGTGGTCAAGCCAGTTCTAT-CATAGGTGCTCCTCTAGCTGCACTACTCTCGTCACCTCT 599
|| ||||||||||| || || | |||| ||||||||||||||||| ||||||||||||||
Sbjct 541 AGCGGTCAAGCCAGCTCCATTC-TAGGCGCTCCTCTAGCTGCACTCCTCTCGTCACCTCT 599
Query 600 CACATTGTTGATTCCAAATCCTGTTGGTGTAGCAACTGTCACTGCTGGGATGTATTGTAT 659
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 CACATTGTTGATTCCAAATCCTGTTGGTGTAGCAACGGTCACTGCTGGGATGTATTGTAT 659
Query 660 GAGTAGGTATGCTACTGATATCGGTGTTAGAAACGATGTGATCAAGGTTCCTGTTGAGGA 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 GAGCAGGTATGCTACTGATATCGGTGTTAGAAACGATGTGATCAAGGTTCCTGTTGAAGA 719
Query 720 TTTAGCTCTGAACCTTGGCCTTAAA-CCTCTCAAGAGAAAAAGGAAAGCTTGTGACACCA 778
||||||||||||||||||| ||||| || | ||||||||| |||||||||| || |||||
Sbjct 720 TTTAGCTCTGAACCTTGGCTTTAAAACC-CGCAAGAGAAACAGGAAAGCTTTTGGCACCA 778
Query 779 GCATTTCCAGGTGAACACATATTCTATAATATTCACCAAAAAGTACAGAACATTGGCCAA 838
|||||||||||||||||||| |||||| || |||| | ||||||||| || |||||||||
Sbjct 779 GCATTTCCAGGTGAACACATGTTCTATGATGTTCATCGAAAAGTACATAAGATTGGCCAA 838
Query 839 TGTTTAG 845
|||||||
Sbjct 839 TGTTTAG 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31260791940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5