BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00910.1
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352740 jgi|Araly1|352740|fgenesh1_pg.C_scaffold_6003333 2322 0.0
> Ahg352740 jgi|Araly1|352740|fgenesh1_pg.C_scaffold_6003333
Length=1500
Score = 2322 bits (1257), Expect = 0.0
Identities = 1422/1502 (95%), Gaps = 10/1502 (1%)
Strand=Plus/Plus
Query 1 ATGGCAACACAAGAAGCAGGGAAGCTAGAGTGGAGGATAAGTGTAGACAATGGGACAACA 60
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCATCACAAGAAGCTGGGAAGCTAGAGTGGAGGATAAGTGTAGACAATGGGACAACA 60
Query 61 GAGAGATTGGTTCCTAGATCGGGACTAAGTAAAAGGATCTTTCTTTGGCTAAAGGATTTG 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGAGATTGGTTCCTAGAGCGGGACTAAGTAAAAGGATCTTTCTTTGGCTAAAGGATTTG 120
Query 121 GTAATGAAGGTGATCATGGAGCGGGTAGCTA-AGTTTATGAGGAAAGCTTGGAGGATTGG 179
||||||||||||||| ||||||| | || | ||||||||| ||||||||||||||||||
Sbjct 121 GTAATGAAGGTGATCGTGGAGCGAATGGC-AGAGTTTATGATGAAAGCTTGGAGGATTGG 179
Query 180 GGCAGATGATCCGGCCAAAGTGGTACATTGTCTTAAAGTAGGACTTGCACTTTCATTAGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGCAGATGATCCGGCCAAAGTGGTACATTGTCTTAAAGTAGGACTTGCACTTTCATTAGT 239
Query 240 CTCAATCTTTTATTACATGAGACCTTTGTATGATGGTGTTGGAGGAAATGCTATGTGGGC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTCAATCTTTTATTACATGAGACCTTTGTATGATGGTGTTGGAGGAAATGCTATGTGGGC 299
Query 300 TATCATGACTGTTGTGGTCGTCTTCGAGTCCAATGTTGGAGCAACATTCTGCAAATGTGT 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TATCATGACTGTTGTCGTCGTCTTCGAGTCCAATGTTGGAGCAACATTCTGCAAATGTGT 359
Query 360 AAACAGAGTTGTGGCAACTATATTAGCTGGATCACTAGGCATTGCTGTTCATTGGGTCGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAACAGAGTTGTGGCAACTATATTAGCTGGATCACTAGGCATTGCTGTTCATTGGGTCGC 419
Query 420 CACACAATCAGGAAAAGCTGAGGTTTTTGTGATTGGATGCTCTGTTTTTCTCTTTGCCTT 479
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 420 CACTCAATCAGGAAAAGCTGAGGTTTTTGTGATTGGATGCTCTGTTTTTCTTTTTGCTTT 479
Query 480 CGCAGCTACTTACTCGCGGTTTGTGCCGTCATTCAAAGCCAGATTCGACTATGGAGCAAT 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 CGCAGCTACTTACTCGCGGTTTGTGCCATCATTCAAAGCCAGATTCGACTATGGAGCAAT 539
Query 540 GATCTTTATCCTCACATTTAGCCTTGTCTCAGTAGGCGGTTACCGAGTAGATAAGCTTGT 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 540 GATCTTTATCCTCACATTTAGCCTTGTCTCAGTAGGCGGTTACCGAGTTGATAAGCTGGT 599
Query 600 TGAATTGGCTCAGCAAAGAGTATCAACTATTGCAATAGGAACATCTATTTGCATTATCAT 659
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 600 GGAATTGGCTCAGCAAAGAGTATCAACTATTGCAATTGGAACATCAATCTGCATTATCAT 659
Query 660 TACTGTCTTCTTCTGTCCGATTTGGGCAGGATCTCAGCTTCACCGTCTTATTGAACGTAA 719
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TACTGTCTTCTTCTGTCCCATCTGGGCAGGATCTCAGCTTCACCGTCTTATCGAACGTAA 719
Query 720 CCTCGAAAAACTTGCTGATTCGTTAGACGGCTGTGTAGCAGAGTACTTTAAGGAGAACGA 779
||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 720 CCTCGAAAAACTTGCCGATTCACTAGACGGCTGTGTAGCAGAGTACTTCAAGGAGAACGA 779
Query 780 AGTCTCAACGAATCGAAATGAAGATGAAAACACTAACATGAAATTGCAAGGATTCAAATG 839
|||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 780 AGTCTCGACGAATCGAAATGAAGATGAAGACACTAGCATGAAATTGCAAGGATTCAAATG 839
Query 840 TGTACTCAACTCTAAGGGAACAGAGGAAGCCATGCCGCTTATTCGGTTTTCGGGTTTTTC 899
||| || |||||||| |||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 840 TGTGCTAAACTCTAAAGGAACAGAGGAAGCCATGCCGCTTATTCACTTTGCGGGGTTTTC 899
Query 900 TTT---CTCTCAGGCGAATCTAGCGAGATGGGAACCTGCACATGGAAGCTTTAACTTTCG 956
||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 900 TTTAATCTCTCAGGCGAATCTAGCCAGATGGGAACCTGCACATGGAAGCTTTAACTTCCG 959
Query 957 GCATCCATGGAAGCTATACGTAAAGATAGGGGCTGCTATGCGCAGATGTGCTTATTGCCT 1016
||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 960 ACATCCTTGGAAGTTATACGTAAAGATAGGTGCTGCTATGCGCAGATGTGCTTATTGTCT 1019
Query 1017 TGAGAATCTCAGTATCTGCATCAACTATGAAACAGAGGCACCAGACCAGGTCAAGAACCA 1076
||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||| ||
Sbjct 1020 TGAGAATCTCAGTATCTGCGTTAGCTATGAAACAGAGACACCAGACCAGGTCAAGAAGCA 1079
Query 1077 TTTCGGGGAGGCATGTATGAAACTGAGCTCAGCTTCTTCAAAAATCCTAAGAGAATTAGC 1136
||| || || || ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1080 TTTTGGAGAAGCTTGTATGAAATTGAGCTCAGCTTCTTCAAAAATCTTAAGAGAATTAAT 1139
Query 1137 GGATATGATGAAGAACACGAGAAAATCATCGAAGATGGATTTCCTGGTGTTTGATATGAA 1196
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GGAAATGATGAAGAACACGAGAAAATCATCGAAGATGGATTTCCTGGTGTTTGATATGAA 1199
Query 1197 CTCTGCAGTACAAGAGCTTCAAGAAACTTTAAAAAATGTTCCAATTGAAACCAATAAG-- 1254
||||||||||||||||||||||||||| ||||||| ||||||||||||||| || |||
Sbjct 1200 CTCTGCAGTACAAGAGCTTCAAGAAACCTTAAAAACTGTTCCAATTGAAACAAAGAAGAA 1259
Query 1255 -CCTGAAGAAGTTCCATCTGAAGAGGAGAACAAAGTAGACAGCGAAGAGAGAACCACGTC 1313
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1260 GCCTGAAGAAGTTCCATCTGAAGAGGAGAACAAAGTAGACAATGAAGAGAGAAACACGTT 1319
Query 1314 CATGAGCCTACATGAAGTCCTTCCAGTTGCCACTTTGGTTTCGTTGTTAATCGAAAACGC 1373
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GATGAGCCTGCATGAAGTCCTTCCAGTTGCCACTTTGGTTTCGTTGTTAATCGAAAACGC 1379
Query 1374 AGCTAGAATTCAAACAGCCGTTGAAGCAGTCGATGAACTGGCAAATCTTGCAGA-TTTCG 1432
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1380 AGCTAGAATTCAAACAGCCGTTGAAGCAGTCGATGAACTGGCAAATCTTGCAGACTTT-G 1438
Query 1433 AACAAGATTCGAAAAAGAAAACCGGAGACAACAACACTAAACAACCACCACTAAGTTCCT 1492
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1439 AACAAGATTCAAAAAAGAAAACCGGAGACAACAACACTAAACAACCACCACGAAGCTCCT 1498
Query 1493 AA 1494
||
Sbjct 1499 AA 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5