BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00910.1 Length=1494 Score E Sequences producing significant alignments: (Bits) Value Ahg352740 jgi|Araly1|352740|fgenesh1_pg.C_scaffold_6003333 2322 0.0 > Ahg352740 jgi|Araly1|352740|fgenesh1_pg.C_scaffold_6003333 Length=1500 Score = 2322 bits (1257), Expect = 0.0 Identities = 1422/1502 (95%), Gaps = 10/1502 (1%) Strand=Plus/Plus Query 1 ATGGCAACACAAGAAGCAGGGAAGCTAGAGTGGAGGATAAGTGTAGACAATGGGACAACA 60 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCATCACAAGAAGCTGGGAAGCTAGAGTGGAGGATAAGTGTAGACAATGGGACAACA 60 Query 61 GAGAGATTGGTTCCTAGATCGGGACTAAGTAAAAGGATCTTTCTTTGGCTAAAGGATTTG 120 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAGAGATTGGTTCCTAGAGCGGGACTAAGTAAAAGGATCTTTCTTTGGCTAAAGGATTTG 120 Query 121 GTAATGAAGGTGATCATGGAGCGGGTAGCTA-AGTTTATGAGGAAAGCTTGGAGGATTGG 179 ||||||||||||||| ||||||| | || | ||||||||| |||||||||||||||||| Sbjct 121 GTAATGAAGGTGATCGTGGAGCGAATGGC-AGAGTTTATGATGAAAGCTTGGAGGATTGG 179 Query 180 GGCAGATGATCCGGCCAAAGTGGTACATTGTCTTAAAGTAGGACTTGCACTTTCATTAGT 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GGCAGATGATCCGGCCAAAGTGGTACATTGTCTTAAAGTAGGACTTGCACTTTCATTAGT 239 Query 240 CTCAATCTTTTATTACATGAGACCTTTGTATGATGGTGTTGGAGGAAATGCTATGTGGGC 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CTCAATCTTTTATTACATGAGACCTTTGTATGATGGTGTTGGAGGAAATGCTATGTGGGC 299 Query 300 TATCATGACTGTTGTGGTCGTCTTCGAGTCCAATGTTGGAGCAACATTCTGCAAATGTGT 359 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TATCATGACTGTTGTCGTCGTCTTCGAGTCCAATGTTGGAGCAACATTCTGCAAATGTGT 359 Query 360 AAACAGAGTTGTGGCAACTATATTAGCTGGATCACTAGGCATTGCTGTTCATTGGGTCGC 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AAACAGAGTTGTGGCAACTATATTAGCTGGATCACTAGGCATTGCTGTTCATTGGGTCGC 419 Query 420 CACACAATCAGGAAAAGCTGAGGTTTTTGTGATTGGATGCTCTGTTTTTCTCTTTGCCTT 479 ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 420 CACTCAATCAGGAAAAGCTGAGGTTTTTGTGATTGGATGCTCTGTTTTTCTTTTTGCTTT 479 Query 480 CGCAGCTACTTACTCGCGGTTTGTGCCGTCATTCAAAGCCAGATTCGACTATGGAGCAAT 539 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 480 CGCAGCTACTTACTCGCGGTTTGTGCCATCATTCAAAGCCAGATTCGACTATGGAGCAAT 539 Query 540 GATCTTTATCCTCACATTTAGCCTTGTCTCAGTAGGCGGTTACCGAGTAGATAAGCTTGT 599 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 540 GATCTTTATCCTCACATTTAGCCTTGTCTCAGTAGGCGGTTACCGAGTTGATAAGCTGGT 599 Query 600 TGAATTGGCTCAGCAAAGAGTATCAACTATTGCAATAGGAACATCTATTTGCATTATCAT 659 ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| Sbjct 600 GGAATTGGCTCAGCAAAGAGTATCAACTATTGCAATTGGAACATCAATCTGCATTATCAT 659 Query 660 TACTGTCTTCTTCTGTCCGATTTGGGCAGGATCTCAGCTTCACCGTCTTATTGAACGTAA 719 |||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| Sbjct 660 TACTGTCTTCTTCTGTCCCATCTGGGCAGGATCTCAGCTTCACCGTCTTATCGAACGTAA 719 Query 720 CCTCGAAAAACTTGCTGATTCGTTAGACGGCTGTGTAGCAGAGTACTTTAAGGAGAACGA 779 ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 720 CCTCGAAAAACTTGCCGATTCACTAGACGGCTGTGTAGCAGAGTACTTCAAGGAGAACGA 779 Query 780 AGTCTCAACGAATCGAAATGAAGATGAAAACACTAACATGAAATTGCAAGGATTCAAATG 839 |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 780 AGTCTCGACGAATCGAAATGAAGATGAAGACACTAGCATGAAATTGCAAGGATTCAAATG 839 Query 840 TGTACTCAACTCTAAGGGAACAGAGGAAGCCATGCCGCTTATTCGGTTTTCGGGTTTTTC 899 ||| || |||||||| |||||||||||||||||||||||||||| ||| |||| ||||| Sbjct 840 TGTGCTAAACTCTAAAGGAACAGAGGAAGCCATGCCGCTTATTCACTTTGCGGGGTTTTC 899 Query 900 TTT---CTCTCAGGCGAATCTAGCGAGATGGGAACCTGCACATGGAAGCTTTAACTTTCG 956 ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 900 TTTAATCTCTCAGGCGAATCTAGCCAGATGGGAACCTGCACATGGAAGCTTTAACTTCCG 959 Query 957 GCATCCATGGAAGCTATACGTAAAGATAGGGGCTGCTATGCGCAGATGTGCTTATTGCCT 1016 ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || Sbjct 960 ACATCCTTGGAAGTTATACGTAAAGATAGGTGCTGCTATGCGCAGATGTGCTTATTGTCT 1019 Query 1017 TGAGAATCTCAGTATCTGCATCAACTATGAAACAGAGGCACCAGACCAGGTCAAGAACCA 1076 ||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||| || Sbjct 1020 TGAGAATCTCAGTATCTGCGTTAGCTATGAAACAGAGACACCAGACCAGGTCAAGAAGCA 1079 Query 1077 TTTCGGGGAGGCATGTATGAAACTGAGCTCAGCTTCTTCAAAAATCCTAAGAGAATTAGC 1136 ||| || || || ||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1080 TTTTGGAGAAGCTTGTATGAAATTGAGCTCAGCTTCTTCAAAAATCTTAAGAGAATTAAT 1139 Query 1137 GGATATGATGAAGAACACGAGAAAATCATCGAAGATGGATTTCCTGGTGTTTGATATGAA 1196 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 GGAAATGATGAAGAACACGAGAAAATCATCGAAGATGGATTTCCTGGTGTTTGATATGAA 1199 Query 1197 CTCTGCAGTACAAGAGCTTCAAGAAACTTTAAAAAATGTTCCAATTGAAACCAATAAG-- 1254 ||||||||||||||||||||||||||| ||||||| ||||||||||||||| || ||| Sbjct 1200 CTCTGCAGTACAAGAGCTTCAAGAAACCTTAAAAACTGTTCCAATTGAAACAAAGAAGAA 1259 Query 1255 -CCTGAAGAAGTTCCATCTGAAGAGGAGAACAAAGTAGACAGCGAAGAGAGAACCACGTC 1313 |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1260 GCCTGAAGAAGTTCCATCTGAAGAGGAGAACAAAGTAGACAATGAAGAGAGAAACACGTT 1319 Query 1314 CATGAGCCTACATGAAGTCCTTCCAGTTGCCACTTTGGTTTCGTTGTTAATCGAAAACGC 1373 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 GATGAGCCTGCATGAAGTCCTTCCAGTTGCCACTTTGGTTTCGTTGTTAATCGAAAACGC 1379 Query 1374 AGCTAGAATTCAAACAGCCGTTGAAGCAGTCGATGAACTGGCAAATCTTGCAGA-TTTCG 1432 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1380 AGCTAGAATTCAAACAGCCGTTGAAGCAGTCGATGAACTGGCAAATCTTGCAGACTTT-G 1438 Query 1433 AACAAGATTCGAAAAAGAAAACCGGAGACAACAACACTAAACAACCACCACTAAGTTCCT 1492 |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 1439 AACAAGATTCAAAAAAGAAAACCGGAGACAACAACACTAAACAACCACCACGAAGCTCCT 1498 Query 1493 AA 1494 || Sbjct 1499 AA 1500 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55916479660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5