BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00930.1
Length=3402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330259 jgi|Araly1|330259|fgenesh1_pm.C_scaffold_7002486 1941 0.0
> Ahg330259 jgi|Araly1|330259|fgenesh1_pm.C_scaffold_7002486
Length=3060
Score = 1941 bits (1051), Expect = 0.0
Identities = 1251/1345 (93%), Gaps = 24/1345 (2%)
Strand=Plus/Plus
Query 1907 AGATGGGTGACATATTGGTTGACAAGGTGGGAAGTGGAGAGGCGACTCTTATCGGTGCAG 1966
|||||||||||| ||| |||||||| ||||||||||||||||| || ||||| |||||||
Sbjct 1697 AGATGGGTGACAAATTTGTTGACAAAGTGGGAAGTGGAGAGGCCACACTTATGGGTGCAG 1756
Query 1967 ACAAAATACAAGCTGCGAGTGATCTACATGTTGCTGGTATGGCGAGCACCCCACATGCCT 2026
| |||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||
Sbjct 1757 ATAAAATACAAGCTGCGAGTAATCTACAAGTTGCTGGTATGGTGAGCACCCCACATGCCT 1816
Query 2027 TTGTCCAGGAATCCAAAACGCTGGACCACATAGGTAAAGTTACGGAT--------A---- 2074
||||||||||||||||||||||||| ||||| |||||| |||||||| |
Sbjct 1817 TTGTCCAGGAATCCAAAACGCTGGATCACATTGGTAAATTTACGGATGAAAACGCATCCC 1876
Query 2075 GTGAACATGAAGTTCCTAAGGAAAGAGTTGCGATAGATGCTGATCAGGCTAAATCTGTGA 2134
|||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1877 GTGAACATGAAGTTTCTAAGGAAAAAGTTGAAATAGATGCTGATCAGGCTAAATCTGTGA 1936
Query 2135 AGTCTACTAAGAAGAAAAGTTCAAGAAAAGCCAAGACCCCAGCTAAAGAAGATACTCTGG 2194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1937 AGTCTACTAAGAAGAAAAGTTCAAGAAAAGCCAAGACCCCAGCTAAAGAAGATACTCCGG 1996
Query 2195 TAGATTCTGGTGCACAGAATGTTGAACCTATCAAAGTTGTAGATGGAGAAGGACATGATA 2254
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1997 TAGATTCTGGTGCACAGAATGTCGAACCTATCAAAGTTGTAGATGGAGAAGGGCATGATA 2056
Query 2255 ATGTTATCAGAAATGTATTAGATTCTTTGCAGCAAAGGAACGAAGCTGAGGAGAATATGG 2314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 GTGTTATCAGAAATGTATTAGATTCTTTGCAGCAAAGGAACGAAGCTGAGGAGAATATGG 2116
Query 2315 AGAAAAGTGGGAAGAAATCAAGCAAGAGATCGAAGAAGAAAGACTCTTTGAACATTGTGG 2374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2117 AGAAAAGTGGGAAGAAATCAAGCAAGAGATCGAAGAAGAAAGACTCTTTGAACATTGTGG 2176
Query 2375 AGGAGGCCCAAGTAGTAGATTCTTTGCAGcaaaagaaagaagctgaggaaaatctggaaa 2434
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2177 AGGAGGCCAAAGTAGTAGATTCTTTGCAGCAAAAGAAAGAAGCTGAGGAAAATCTGGAAA 2236
Query 2435 aaagtgggaagaagtcaagcaagagatcaaagaagaaagaCTCTTTGAACATTGTGGAGG 2494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 AAAGTGAGAAGAAGTCAAGCAAGAGATCAAAGAAGAAAGACTCTTTGAACATTGTGGAGG 2296
Query 2495 AGGCCCAAGTATTGTCAGTTGAGGTAAACAATGTTGCTCAGGAGGAAGCTTCTCCCATCA 2554
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 2297 AGGCCCAAGTATTGTCAGTTGAGGTAAACAATATTGCTCAGGAGGAGGCTTCTCCCATCA 2356
Query 2555 ACAACCCAAAAGACACAGATGCATTATTCACGCCAGCTaaaaaaaaTACCGAGAGCAATG 2614
|||||||||||||||| ||||||| |||||| |||||||| |||||||| ||||||||||
Sbjct 2357 ACAACCCAAAAGACACCGATGCATCATTCACTCCAGCTAAGAAAAATACTGAGAGCAATG 2416
Query 2615 CTTCACCTTTGAAAAAGATTATTGAGGTCACCGATAATACTGAGGATATTAACCGTTCCA 2674
|||| |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 2417 CTTCTCCTTTGAAAAAGATTACTGAGGTCACCGGTAATACTGAGGATAGTAACCGTTCCA 2476
Query 2675 TGCAAGTTCAGAAAGAGAACGCTGGTAT-GGGAGACAATATTGGTTCTAGCCAAAAGGAC 2733
||||||||| |||||||||| ||| ||| ||| |||||| ||||||||||||||||||||
Sbjct 2477 TGCAAGTTCTGAAAGAGAACACTGATATTGGG-GACAATTTTGGTTCTAGCCAAAAGGAC 2535
Query 2734 GATATTGTTGGTGGTGCTAACAAGCAAGACCAAGTGACTGGTGGAACTAAGTCTAAAAAG 2793
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2536 GATATTGTTGGTGGTGCTAACAAGCAAGATCAAGTGACTGGTGGAACTAAATCTAAAAAG 2595
Query 2794 GAGAAGAAAAGCCTTGATTTGCATCCTGGTGGTTCCATTGATGGCTCAATGAAAATGAAA 2853
||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||
Sbjct 2596 GAGAAGAGAAGCCTTGTTTTGCATCCTGGTGGTTCCATTGATCTTTCAATGAAACTGAAA 2655
Query 2854 GAGACAAAAGGTAGAGTTC-AACCATCTAGTTCAGGTACTAGTCAATTGCAGTCAATGGC 2912
||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2656 GAGACTAAAGGTAGA-TTCCAACCATCTAGTTCAGGTACTAGTCAATTGCAGTCAAGGGA 2714
Query 2913 TAAGAATGATCGCAGTGGATCAAAGGTTGATCTTTCTGATGCACCCATGAAAGGCACAGT 2972
||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| |||
Sbjct 2715 TAAGATTGATCGCAGTCGATCAAAGGTTGATCATTCTGATGCACCCATGAAAGGCGTAGT 2774
Query 2973 AAACAACAAGAAGGAAGCTGTGAAGAAAAGCTCTAAGTCGGTTACAGTGAACAAGAGTAA 3032
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2775 CATCAACAAGAAGGAAGCTGTGAAGAAAAGCTCTAACCCGGTTACAGTGAACAAGAGTAA 2834
Query 3033 GATGAATGTCAACAACAAGGAGAAAGCTGTGAAGAAAATCTCTAACTCAGTCACAGCGAA 3092
||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||
Sbjct 2835 GATGAATGTCAACAACAAGAAGGAAGCTGTGAAGAAAAACACTAACTCAGTCACAGCGAA 2894
Query 3093 CAAAAGTACA-ACGAATTTCTTCAAGGATGCTGAGGAGGATGAATCTAAGACGACTACGA 3151
||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 2895 CAAGAGTA-AGACGAATTTCTTCAAGGATGCTGAGGAGGATGAATCTAAGACGACTTCAA 2953
Query 3152 GTGACTCCACTAAAGCACCATCAGATAGTTCATCAGACAATGATAGTGAT-GTG-----A 3205
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 2954 ATGACTCCACTAAAACACCATCAGATAGTTCATCAGACGATGATAGTGATAGTGCTGTGA 3013
Query 3206 CTTCTTCTATGCATATGAAGCAAGG 3230
|||||||||||| || |||||||||
Sbjct 3014 CTTCTTCTATGCCTAGGAAGCAAGG 3038
Score = 907 bits (491), Expect = 0.0
Identities = 583/627 (93%), Gaps = 8/627 (1%)
Strand=Plus/Plus
Query 1181 AATCTCTTCCAATCCCAGAAAGAGAAACTCTTCAAAATCCTCTTGTAGAAGCAATACAAA 1240
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 1073 AATCTTTTCCAATCCCAGAAAGAGAAACTCTTGGAAATCCTCTTGTAGAAGCAACACAGA 1132
Query 1241 AAGAAACTGAGTTGGGTGTGAAAACTGTCGAAGATGTGGGAACAA-ATAATATGGAAACT 1299
||||||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||
Sbjct 1133 AAGAAACTGAGTTGGGTGTGAAATCTGCCGAAGATGTGGGAA-AAGATAATATGGAAACT 1191
Query 1300 GATACTCTAGTGAGCCACCCGGAAAATCATTTGGTGGCCAACAGTGAGTTGACATCTACT 1359
|||||||||||||||||||||||||||||| ||| |||||||||||||||| || | | |
Sbjct 1192 GATACTCTAGTGAGCCACCCGGAAAATCATCTGGAGGCCAACAGTGAGTTGGCAACCAGT 1251
Query 1360 CCAGTTACTGAGAAGAAGAAAAGGCAAAAGAAGAGCTCAAAAGATCAAATCAATCTATCT 1419
|||||||||||||||||||||| || |||||||| ||||||||||| ||||||| ||||
Sbjct 1252 CCAGTTACTGAGAAGAAGAAAAAGCGAAAGAAGATCTCAAAAGATCTCATCAATCAATCT 1311
Query 1420 GCTACT---GC--C-GCTACTGCTACCACAGCTTCAAGAGAAATTGTGAACGAGATAAAC 1473
||| || || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 GCTGCTGCCGCTACTGCTACTGCTACCACAGCTTCAAGAGAAATTGTGAACGAGATAAAC 1371
Query 1474 GGAGCACCTGGAAATGTAGATCGTGTTGATGCTACTTCTGAATCTTGTCTAATATCACAA 1533
|||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1372 GGAGTACCTGGAAATGTTGATCGTGTTGATGCTACTTCTGAATCTTGTCTAATTTCACAA 1431
Query 1534 AGAGAAAATCTTGGCAAAGAAAATGAGATTGGTGAGAAGATTAAGGAAGATGTGGGAAGC 1593
|||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1432 AGAGGAAATCTTGGCAAAGAAAATGAGATTGGTGAGAAGATTAATGAAGTTGTGGGAAGC 1491
Query 1594 GGAAAAGCTATACCAAGTTCTGCAGATAATATCCAGACCGATAAACGGGTGAGCTACCCA 1653
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1492 GGAAAAGCTATACCAAGTTCTGCAGATAATATCCAGACCGATAATTTGGTGAGCTACCCA 1551
Query 1654 GATAATCAGTTGGAGGTTAGCAGTGGTTTGACAACCGGGCCAACTACAGAGAAGAAGAAA 1713
|| ||||||||||||||||||||||||||||||||| | ||| ||| ||||||||||||
Sbjct 1552 GAAAATCAGTTGGAGGTTAGCAGTGGTTTGACAACCAGTCCAGTTACTGAGAAGAAGAAA 1611
Query 1714 AGGCAAAAGAAGTCCTCAAAGAATGACATCAATAAATCTACTGCTGCTACTACAACATCA 1773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1612 AGGCAAAAGAAGTCCTCAAAGAATGACATCAATAAATCTACTGCTGCTACTACAACAGCA 1671
Query 1774 AAGATAATTGTGAATGAGAGGGAGAAG 1800
|||||||||||||||||||||||||||
Sbjct 1672 AAGATAATTGTGAATGAGAGGGAGAAG 1698
Score = 641 bits (347), Expect = 0.0
Identities = 428/467 (92%), Gaps = 6/467 (1%)
Strand=Plus/Plus
Query 629 TTAGTATGGGAGAGAATCGGCAAACTTCTGTTGCGGACAGGCTATTGGAAGAGAAAAATC 688
||| || ||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 614 TTAATACGGGGGAGAATCAGCAAACTTCTGATGCGGACAGGCTATTGGAAGAGAAAATTC 673
Query 689 TCACAGTTAATTCAGAGCTTGTAGATGGGCAAACCAGTGGTGTGGTGAAGGAAGTACTAG 748
||||||||||||||||||||| ||||||||| ||||| |||| ||||||||| |||| ||
Sbjct 674 TCACAGTTAATTCAGAGCTTGAAGATGGGCATACCAGGGGTGAGGTGAAGGATGTACCAG 733
Query 749 ACAATCAAACTGTTAAAGGAGCTCTAGAAAAGCTAGATGATCTTACGGGAGCAATAGAAC 808
|||| | ||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 734 ACAAACCAACTGTTAAAGAAGCTCTAGAAAAGCTAGATGATCTTACTGGAGCAATAGAAC 793
Query 809 AAGATCTTGAAACGGGA-GAAATCACTGCTGATATAGTCATGATTGACCAAGAGAAGGGT 867
|||||||||||| |||| |||| | |||||||||||||||||||||||||||||||| |
Sbjct 794 AAGATCTTGAAAAGGGAGGAAA-AAATGCTGATATAGTCATGATTGACCAAGAGAAGGAT 852
Query 868 AGTACACCTGT-TTCAGAACTTGTAGATGGGCAGATTACATCACAAGATGATGAGAGAGG 926
| ||||| | |||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 853 CTTCCACCT-TCTTCAGAACTTGTAGATGGGCAGATTACATCACAAAATGATGAAAGAGG 911
Query 927 TGAGGGAAG-AAGATTGGCTCCAAGTGCTCTCGATAATCTTCAAACTGCTGAAGTGGTGA 985
||||||| | || |||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 912 TGAGGGACGCAA-ATTGGCTCCAAGTGTTGTCGATAATCTTCAAACTGCTGAATTGGTGA 970
Query 986 CTAACGCGGATAACCAGTTGGAAGCTAGCAGTGGTATGACAACTGGTCCAGCTACAGAGA 1045
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 971 CCAACGCGGATAACCAGTTGGAAGCTAGCAGTGGTTTGACAACTGGTCCAGCTACAGAGA 1030
Query 1046 AGAAGAGAAAGCGAACGAAGGGCTCAAAAGATCACATCAAACAATCT 1092
||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1031 AGAAGAGAAAGAGAACGAAGAGCTCAAAAGATCACATCAAACAATCT 1077
Score = 536 bits (290), Expect = 4e-151
Identities = 451/523 (86%), Gaps = 33/523 (6%)
Strand=Plus/Plus
Query 1 ATGGCTAATCGCGAAACAGATTCCTCACCGGAGATTCGCTGCGTCTTTGTAGAAACCAAC 60
|||||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||
Sbjct 1 ATGGCTAATCGCGAAAAAAATTCCTCACCGGAGATTCACTGCGTCTATGTAGAAACCAAC 60
Query 61 CTCGACACTCGTCTCGCGTTACCTGTGCATAAAGATGAAATCATCTCCGATTTCAAAGAC 120
||||||||||| ||||||||||| || || |||||||||||| |||||||||||||||||
Sbjct 61 CTCGACACTCGCCTCGCGTTACCCGTACACAAAGATGAAATCGTCTCCGATTTCAAAGAC 120
Query 121 AAAGTACTCAAGGAGCATAAACAAGTTTTCCCAGAAATTGGAGAAATCAATATCTCTGCG 180
||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct 121 AAAGTACTCAAGGAGCATAAAAAAGTTTTCCCAGAAATCGGAGAAATTAATATCTCTGCG 180
Query 181 ATGAAGGTTAAAAGACGAAG-AGAGTTTTATCATTTCTCAGAATCTTTGAATGTGTGTAA 239
||||||||||| ||||||| | | |||||||||||||| ||||||||||||||||||||
Sbjct 181 TTGAAGGTTAAACGACGAAGGAAA-TTTTATCATTTCTCGGAATCTTTGAATGTGTGTAA 239
Query 240 GGCTTTTGATGGCATTAGTACAGACTGGTTTATGTATATTGATGCCGTTAGAGTTGACAA 299
|||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 240 GGCTTTTGATGGGATTAGTAGAAACTGGTTTATGTATGTTGATGCCGTTAGAGTTGACAA 299
Query 300 GGGTAAGACGTTGGCTATAATGGATGTTGATCAAAA-C---C---T-T-GAGTTGGTTGA 350
|||| ||| |||| ||||||||| | ||||||||| | | | | |||||||||||
Sbjct 300 GGGTGAGATGTTGACTATAATGGCTACTGATCAAAATCGTTCGAATCTTGAGTTGGTTGA 359
Query 351 GA--A-GAAGGA-A--G--A--GATTCC--AAATGGTA-A-G--A---ATACTAAGGATT 391
|| | |||||| | | | | ||| ||||| || | | | ||||||||||||
Sbjct 360 GAGGAAGAAGGAGATTGGTATTGGTTCAGTAAATG-TAGATGGTATGCATACTAAGGATT 418
Query 392 TGACTATTGGAGAAGGTTTGGAAACTCAACTTGTTGAGAAAAAGACGAGGAAGAGGAGAA 451
||||||||| ||||||||||| |||| || | |||||||| ||||||||||||||||| |
Sbjct 419 TGACTATTGAAGAAGGTTTGGGAACTGAAGTAGTTGAGAAGAAGACGAGGAAGAGGAGGA 478
Query 452 TTGTAAGTTCCGG-TGGGAAAACAAGTCGAAAGAAATCTAAGG 493
|| ||||||| || ||||||||||||||| |||||| | ||||
Sbjct 479 TTTTAAGTTC-GGATGGGAAAACAAGTCGGAAGAAAACCAAGG 520
Score = 172 bits (93), Expect = 1e-41
Identities = 114/124 (92%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 2265 AAATGTATTAGATTCTTTGCAGCAAAGGAACGAAGCTGAGGAGAATATGGAGAAAAGTGG 2324
||| ||| |||||||||||||||||| ||| ||||||||||| ||| |||| |||||||
Sbjct 2185 AAA-GTAGTAGATTCTTTGCAGCAAAAGAAAGAAGCTGAGGAAAATCTGGAAAAAAGTGA 2243
Query 2325 GAAGAAATCAAGCAAGAGATCGAAGAAGAAAGACTCTTTGAACATTGTGGAGGAGGCCCA 2384
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2244 GAAGAAGTCAAGCAAGAGATCAAAGAAGAAAGACTCTTTGAACATTGTGGAGGAGGCCCA 2303
Query 2385 AGTA 2388
||||
Sbjct 2304 AGTA 2307
Score = 152 bits (82), Expect = 2e-35
Identities = 365/493 (74%), Gaps = 53/493 (11%)
Strand=Plus/Plus
Query 1004 TGGAAGCTAGCAGTG-GTATGACAACTGGTCCAGCTACAGAGAAGAAGAGAAAGCGAACG 1062
|||| || | ||||| || || |||| |||||| ||| |||||||||| |||||||| |
Sbjct 1223 TGGAGGCCAACAGTGAGT-TGGCAACCAGTCCAGTTACTGAGAAGAAGAAAAAGCGAAAG 1281
Query 1063 AAGGGCTCAAAAGATCACATCAAACAATCTACTGCT---G---CTGCTA---CTA-CA-A 1111
||| ||||||||||| |||||| |||||| ||||| | |||||| ||| || |
Sbjct 1282 AAGATCTCAAAAGATCTCATCAATCAATCTGCTGCTGCCGCTACTGCTACTGCTACCACA 1341
Query 1112 -ATTCAAGAAAAATTGTGAATGAGATAAATGAATTACCTGGAAATGGAGATTGTGGTGAT 1170
||||||| |||||||||| |||||||| | | |||||||||||| ||| ||| ||||
Sbjct 1342 GCTTCAAGAGAAATTGTGAACGAGATAAACGGAGTACCTGGAAATGTTGATCGTGTTGAT 1401
Query 1171 GCTACTTCTAAATCTCT-TCCAATCCCAGAAAGA-GAAACTCTT--C----AAAATCCTC 1222
||||||||| ||||| | || ||| || ||||| |||| |||| | |||||
Sbjct 1402 GCTACTTCTGAATCT-TGTCTAATTTCACAAAGAGGAAA-TCTTGGCAAAGAAAATGAGA 1459
Query 1223 TT-GTAGAAGCAATACAAAAAGAAACTGAGTTGGG-TG-TGAAAA-CTGT-CGAAGATGT 1277
|| || | || || | || | || | | |||| | ||||| || | | ||| | |
Sbjct 1460 TTGGT-G-AG-AAGA-TTAATG-AAGT-TG-TGGGAAGCGGAAAAGCTATACCAAG-T-T 1510
Query 1278 GGGAACAAATAATATGGAAACTGATACTCTAGTGAGCCACCCGGAAAATCATTTGGTGGC 1337
| || ||||||| | || |||| | | |||||| |||| |||||||| |||| ||
Sbjct 1511 CTG--CAGATAATATCCAGACCGATAATTTGGTGAGCTACCCAGAAAATCAGTTGGAGGT 1568
Query 1338 CAACAGTGAG-TTGACATCTACTCCAGTTACTGAGAAGAAGAAAAGGCAAAAGAAGAGCT 1396
| ||||| | |||||| | | |||||||||||||||||||||||||||||||||| ||
Sbjct 1569 TAGCAGTG-GTTTGACAACCAGTCCAGTTACTGAGAAGAAGAAAAGGCAAAAGAAGTCCT 1627
Query 1397 CAAAAGA-TCAAATCAATCTATCTGCTACTGCCGCTACTGCTACCACAGCTTCAAGAGAA 1455
|||| || | | |||||| |||| ||||| |||||| | | ||||| |||| ||
Sbjct 1628 CAAA-GAATGACATCAATAAATCT---ACTGCTGCTACTAC-A--ACAGCA--AAGATAA 1678
Query 1456 ATTGTGAACGAGA 1468
||||||| ||||
Sbjct 1679 -TTGTGAATGAGA 1690
Score = 84.2 bits (45), Expect = 6e-15
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 2974 AACAACAAGAAGGAAGCTGTGAAGAAAAGCTCTAAGTCGGTTACAGTGAACAAGAGTAAG 3033
|||||||||||||||||||||||||||| | |||| || || |||| |||||||||||||
Sbjct 2845 AACAACAAGAAGGAAGCTGTGAAGAAAAACACTAACTCAGTCACAGCGAACAAGAGTAAG 2904
Query 3034 ATGAAT 3039
| ||||
Sbjct 2905 ACGAAT 2910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128444308875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5