BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00940.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327681 jgi|Araly1|327681|fgenesh1_pm.C_scaffold_6002901 1428 0.0
Ahg921105 jgi|Araly1|921105|scaffold_102386.1 111 7e-24
Ahg492780 jgi|Araly1|492780|fgenesh2_kg.7__2213__AT4G21080.1 71.3 1e-11
> Ahg327681 jgi|Araly1|327681|fgenesh1_pm.C_scaffold_6002901
Length=1719
Score = 1428 bits (773), Expect = 0.0
Identities = 863/904 (95%), Gaps = 16/904 (2%)
Strand=Plus/Plus
Query 78 CtcacatcatggaccatcatcagtatcatcatcatgatcaataccaacatcaGATGATGA 137
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 821 CTCACATCATGGACCATCATCAGTATCATCATCATGATCAATACCAACATCA-A--ATGA 877
Query 138 CTAGTACTAACAATAATTCCTATAACACCATCGTcacaacacaaccaccacca---acaa 194
||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 878 CTATTACTAACAATAATCCCTATAACACCATCGTCACAACACAACCACCACCACCTACAA 937
Query 195 caacaacaatggattcaacaacagcaacaacTATGATAATGGATGACGAGAAGAAGTTGA 254
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 938 CAACAACAATGGATTCAACAACAGCAACAACAATGATAATGGATGATGAGAAGAAGTTGA 997
Query 255 TGACGACAATGAGCACTAGGCCGCAAGAACCAAGAAACTGTCCAAGATGCAACTCAAGCA 314
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 TGACGACGATGAGCACTAGGCCGCAAGAACCAAGAAACTGTCCAAGATGCAACTCAAGCA 1057
Query 315 ACACCAAGTTTTGTTATTACAACAACTACAGCTTAGCACAGCCTAGGTACTTGTGTAAGT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 ACACCAAGTTTTGTTATTACAACAACTACAGCTTAGCACAGCCTAGGTACTTGTGTAAGT 1117
Query 375 CTTGTCGGAGATATTGGACTGAAGGTGGCTCTCTCCGTAACGTCCCCGTAGGCGGAGGTT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 CTTGTCGGAGATATTGGACTGAAGGTGGCTCTCTCCGTAACGTCCCCGTAGGCGGAGGTT 1177
Query 435 CTAGAAAGAACAAGAAGCTTCCATT--T-C---CTAATTCCTCTACTTCTTCTTCCACCA 488
||||||||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct 1178 CTAGAAAGAACAAGAAGCTTCCACTACTACTTTCTAATTCCTCTACTTCTTCTTCCACCA 1237
Query 489 AGAACCTCCCGGATCTCAACCCTCC-TTTCGTCTTCACATCATCAGCTTCATCATCAAAC 547
|||||||||| ||||| |||||||| ||| |||||||| |||||| | ||||||||||||
Sbjct 1238 AGAACCTCCCAGATCTTAACCCTCCGTTT-GTCTTCACGTCATCACCATCATCATCAAAC 1296
Query 548 CCTAGCAAGACGCATCAAAACAATAATGACCTCAGCCTATCCTTCTCCTCCCCTATGCAA 607
|||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1297 CCTAACAAGACGCATCAAAACAATAATGACCTCAGCCTTTCATTCTCCTCCCCTATGCAA 1356
Query 608 GACAAGCGAGCTCAAGGGCATTACGGTCATTTCAGTGAGCAAGTTGTGACAGGAGGGCAG 667
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1357 GACAAGCGAGCTCAAGGGCATTACAGTCATTTCACCGAGCAAGTTGTGACAGGAGGGCAG 1416
Query 668 AACTGTCTTTTCCAAGCTCCTATGGGAATGATTCAGTTTCGTCAAGAGTATGATCATGAG 727
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 AACTGTCTTTTCCAAGCTCCTATGGGAATGATTCAGTTTCGTCAAGAGTATGATCATGAC 1476
Query 728 CACCCCAAAAAGAATCTTGGGTTTTCATTAGACAGGAACGAGGAAGAGATTGGTAATCAT 787
|||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1477 CACCACAAAAAGAATCTTGGGTTTTCATTAGACAGGAACAAGGAAGAGATTAGTAATCAT 1536
Query 788 GATAACTTCGTTGTTAATG-AGGAAGGAAGTAAGATGATGTATCCTTATGGAGATCATGA 846
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1537 GATAACTTCGTTGTTAATGGAG-AAGGAAGTAAGATGATGTATCCTTATGGAGATCATGA 1595
Query 847 AGACCGTCAACAACATCACCATGTGAGACACGATGATGGTAATAAGAAGAGAGAAGGTGG 906
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 AGACCGTCATCAACATAACCATGTGAGACACGATGATGGTAATAAGAAGAGAGAAGGTGG 1655
Query 907 TTCAAGCAATGAGCTATGGAGCGGAATCATCCTAGGTGGTGATAGTGGTGGACCAACATG 966
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1656 TTCAAGCAATGAGCTATGGAGTGGAATCATCCTAGGTGGTGACAGTGGTGGACCAACATG 1715
Query 967 GTGA 970
||||
Sbjct 1716 GTGA 1719
> Ahg921105 jgi|Araly1|921105|scaffold_102386.1
Length=827
Score = 111 bits (60), Expect = 7e-24
Identities = 101/121 (83%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 313 CAACACCAAGTTTTGTTATTACAACAACTACAGCTTAG-CACAGCCTAGGTACTTGTGTA 371
|||||||||||||||||||||||||||||||||||| | | |||||||| ||||| || |
Sbjct 162 CAACACCAAGTTTTGTTATTACAACAACTACAGCTT-GTCTCAGCCTAGATACTTCTGCA 220
Query 372 AGTCTTGTCGGAGATATTGGACTGAAGGTGGCTCTCTCCGTAACGTCCCCGTAGGCGGAG 431
|| ||| || | || |||||| |||| || |||||||||||| | || ||||| ||||
Sbjct 221 AGGGTTGCCGTCGTTACTGGACTAAAGGCGGTTCTCTCCGTAACATTCCTGTAGGTGGAG 280
Query 432 G 432
|
Sbjct 281 G 281
> Ahg492780 jgi|Araly1|492780|fgenesh2_kg.7__2213__AT4G21080.1
Length=545
Score = 71.3 bits (38), Expect = 1e-11
Identities = 74/91 (81%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 314 AACACCAAGTTTTGTTATTACAACAACTACAGCTTAGCA-CAGCCTAGGTACTTGTGTAA 372
|||||||||||||||||||||||||||||||| || || || || | ||||| || ||
Sbjct 97 AACACCAAGTTTTGTTATTACAACAACTACAGTTT-GCTTCAACCGCGCTACTTCTGCAA 155
Query 373 GT-CTTGTCGGAGATATTGGACTGAAGGTGG 402
| || |||| ||||| |||||| | |||||
Sbjct 156 GAACT-GTCGTAGATACTGGACTCATGGTGG 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5