BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00970.1
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943653 jgi|Araly1|943653|scaffold_604197.1 305 7e-82
Ahg897054 jgi|Araly1|897054|Al_scaffold_0005_1020 220 2e-56
Ahg943226 jgi|Araly1|943226|scaffold_603770.1 84.2 3e-15
> Ahg943653 jgi|Araly1|943653|scaffold_604197.1
Length=251
Score = 305 bits (165), Expect = 7e-82
Identities = 197/212 (93%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 1788 TGGTTTGTTGTGTGTTCAGGAGAATGCAGAGAGTAGACCAACAATGGCTTCTGTTGTTGT 1847
||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 TGGTTTG-T-TGTGTCCAGGAGAATGCAGAGAGTAGACCAACAATGGCTTCTGTTGTTGT 80
Query 1848 AATGCTCAATGCAAATTCTTTCACTTTACCGAGACCCTCGCAACCCGCATTTTACTCGGG 1907
|||||||||||||||| || ||||||||||||||||||| |||||||| |||||| ||||
Sbjct 81 AATGCTCAATGCAAATGCTATCACTTTACCGAGACCCTCACAACCCGCTTTTTACACGGG 140
Query 1908 AGATGGAGAATCATTGTC-AAGAGACAAAAATCAGATAAATCATATTGCATCTTTGAATG 1966
||||||||||||||| || |||| |||| |||||||||||||||||||| ||||||||||
Sbjct 141 AGATGGAGAATCATT-TCCAAGATACAACAATCAGATAAATCATATTGCGTCTTTGAATG 199
Query 1967 ATGTTACAATTACCGAGTTCGATGCTCGTTAA 1998
||||||||||||| |||||| |||||||||||
Sbjct 200 ATGTTACAATTACTGAGTTCTATGCTCGTTAA 231
> Ahg897054 jgi|Araly1|897054|Al_scaffold_0005_1020
Length=948
Score = 220 bits (119), Expect = 2e-56
Identities = 167/189 (88%), Gaps = 8/189 (4%)
Strand=Plus/Plus
Query 1081 GGTGTTCTTGATTATGGGGAAGAGATAGCTGTGAAAAGATTGTCAATGAAATCAGGACAA 1140
||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 759 GGTATTCTTGATTCTGGGGAAGAG--AGCTGTGAAAAGATTGTCAATGAAATCAGGACAA 816
Query 1141 GGAGACAATGAGTTCATAAACGAAGTCTCATTGGTTGCA-AAACTCCAACATCGTAACCT 1199
||||||||||||||| ||||||||||||| | ||||| | ||||| ||||||| ||| ||
Sbjct 817 GGAGACAATGAGTTCGTAAACGAAGTCTCGTGGGTTG-AGAAACTTCAACATCATAATCT 875
Query 1200 TGTTAGGCTCTTAGGTTTCTGCTTACA-AGG-AGAAGAACGAATTC-TCATCTATGAGTT 1256
||| ||||| |||||||| | |||| | ||| |||||||||| ||| |||||||||||||
Sbjct 876 TGTGAGGCTTTTAGGTTTTTACTTA-AGAGGGAGAAGAACGACTTCATCATCTATGAGTT 934
Query 1257 CTTCAAGAA 1265
||||| |||
Sbjct 935 CTTCAGGAA 943
> Ahg943226 jgi|Araly1|943226|scaffold_603770.1
Length=1930
Score = 84.2 bits (45), Expect = 3e-15
Identities = 222/304 (73%), Gaps = 26/304 (9%)
Strand=Plus/Plus
Query 1131 ATCAGGACAAGGAGACAAT-GAGTTCATA-AACGAAGTCTCATTGGTTG-CAAAACTCCA 1187
||||||||||||||| || ||||| | | || || || ||| | ||| ||| ||||||
Sbjct 1088 ATCAGGACAAGGAGA-TATGGAGTTTA-AGAATGAGGTTTCACT-CTTGACAAGACTCCA 1144
Query 1188 ACATCGTAACCTTGTTAGGC-TCTTAGGTTTCTGCTTA-CAAGGAGAAGAACGA-ATTCT 1244
|||| | || ||||||| || || | || ||||| | | ||||||| ||| || |||||
Sbjct 1145 ACATAGGAATCTTGTTAAGCTTCAT-GGGTTCTG-TAATGAAGGAGATGAA-GAGATTCT 1201
Query 1245 CATCTATGAGTTCT-TCAAGAACACAAGCCTAGACCA-TTACATATTTGATTCTA-ATAG 1301
|||| ||||| | || ||| |||| || || || || || ||||| | | | |
Sbjct 1202 TGTCTACGAGTT-TGTCCCCAACTCAAGTCTTGATCACTT-TATCTTTGA-TGAAGACAA 1258
Query 1302 GAG-AATGATCTTAGATTGGGA-AACACGTTATAGGATTATCTCAGGTGTTGCTAGAGGT 1359
| | | ||||| | ||||| | ||| || ||||| ||| |||||| ||||
Sbjct 1259 GCGTTCTCTTCTTACA-TGGGAGGTGAGGTT-CAGAATTATAGAAGGCATTGCTAAAGGT 1316
Query 1360 CTTCTCTATCTCCATGAAGATTCTC-GTTTCAAGATTGTTCATAGAGA-TATGAAAGCCA 1417
||||||||||||||||||||||||| | | |||||| |||||||||| | |||| || |
Sbjct 1317 CTTCTCTATCTCCATGAAGATTCTCAGATG-AAGATTATTCATAGAGACT-TGAAGGCAA 1374
Query 1418 GCAA 1421
||||
Sbjct 1375 GCAA 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75113963140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5