BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00990.1
Length=2804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490470 jgi|Araly1|490470|fgenesh2_kg.6__3604__AT4G00990.1 3716 0.0
> Ahg490470 jgi|Araly1|490470|fgenesh2_kg.6__3604__AT4G00990.1
Length=2557
Score = 3716 bits (2012), Expect = 0.0
Identities = 2390/2570 (93%), Gaps = 36/2570 (1%)
Strand=Plus/Plus
Query 79 TTTGTCTCCGAGTATGGAGAAAATGAGAGGGAAGCGAATCAGACCAAGAGATTCCGGCGA 138
||||||||||||||||||||||| || ||||||||||||||||| | ||||||||| |||
Sbjct 1 TTTGTCTCCGAGTATGGAGAAAAGGAAAGGGAAGCGAATCAGACGAGGAGATTCCGACGA 60
Query 139 GTTAGTCGAAGATGGGAGATCTGAAAGCGAGCGTAAGACgaggaagaaagagaatgatgt 198
|||| ||||||||||| ||||| ||| || ||||||| |||||||||||||||||||| |
Sbjct 61 GTTATTCGAAGATGGGGGATCTCAAAACGGGCGTAAGGCGAGGAAGAAAGAGAATGATCT 120
Query 199 tgtgagcaaaggaagaatcggaagagg-a-a-g-ag--g--aa---ga----ggagaggT 243
|||||||| |||| ||||||||||||| | | | || | || || ||||||||
Sbjct 121 TGTGAGCAGAGGACGAATCGGAAGAGGAAGAGGAAGAAGAAAATTTGATGGCGGAGAGGT 180
Query 244 TTCGAAGCGATCTATTGAAATAGACATTTCTAATCCCGAGAAGGATATTAAGCCTGACGG 303
||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||| ||
Sbjct 181 TTCTAAGCGATCTATTGAAATCGACATGTCTAATCCCGAGAAGGATATTAAGTCTGATGG 240
Query 304 AAGCAGAAAGTGTTTGGGTTCGACGTGTCATCATTGTAAGATCTTGACGAGTGAGAGTGA 363
||||||||||| | |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 241 AAGCAGAAAGTATGTGGGTTTGACGTGTCATCATTGTAAGAACTTGACGAGTGAGAGTGA 300
Query 364 TCTTATCTTCTGTTCAAAGTGTAACAAGAAGTGTTATTGCTTTGACTGCATCAAGAGATC 423
|||||||||||||||||| ||||||||||| | |||||| ||| || ||||||||||
Sbjct 301 TCTTATCTTCTGTTCAAAATGTAACAAGAA--G-TATTGCAATGAGTGTATCAAGAGATG 357
Query 424 GTATTCAGAAAGAACACAT-GAGGAAGTTAGAGCTGCTTGTCCATTCTGTATGATGACTT 482
|||||||||||||||| || ||||||||| |||||||||||||||||||||||| || ||
Sbjct 358 GTATTCAGAAAGAACA-ATAGAGGAAGTTCGAGCTGCTTGTCCATTCTGTATGAAGAATT 416
Query 483 GCATTTGCAGAGCTTGTTTGCGGTTGCCTTTGGTTATCAAGCCTCCAAGTGAAAAAGATA 542
||| |||||||| |||||||||||||||||||||| ||||||||| |||||||||||| |
Sbjct 417 GCAATTGCAGAGGTTGTTTGCGGTTGCCTTTGGTTGTCAAGCCTCGAAGTGAAAAAGAAA 476
Query 543 CAGATGTCAAGCTTAAGCAGCTGCAGTATCTGTTAGTCAAAGTTCTCCCAGTTCTTAAGG 602
|| |||||||| |||||||| ||||||| || ||||| ||||||||||||||||||||||
Sbjct 477 CAAATGTCAAGTTTAAGCAGTTGCAGTACCTATTAGTTAAAGTTCTCCCAGTTCTTAAGG 536
Query 603 ATATTTATACGGAGCAGAACCGTGAACTAGAGATTGAATCAACAATTAGAGGACACCCTG 662
||||||||| |||||||||||||||||| ||||||||| |||| |||||||||| |||||
Sbjct 537 ATATTTATATGGAGCAGAACCGTGAACTTGAGATTGAAGCAACTATTAGAGGACTCCCTG 596
Query 663 TGACAGAAGCTAATATCAAGAGGTGCAAACTTGACCCAAGCGAACGCATATACTGTGATC 722
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 597 TGACAGAAGCTAATATTAATAGGTGCAAACTTGACCCAAGTGAACGCATATACTGTGATC 656
Query 723 TCTGCCGCACATCCATTGCCAATTTTCACAGAAGCTGTCCGAACAAAAATTGTTCAGTCG 782
||||||| |||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 657 TCTGCCGAACATCCATTGCCAATTTTTACAGAAGCTGTCCGAACCCAGATTGTTCAGTCG 716
Query 783 ATATATGTCTTTCTTGCTGCAAGGAACTAAGTGAGGGCTTCCATCAAGAGAGAGATGGGA 842
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 717 ATATATGTCTTTCTTGTTGCAAGGAACTAAGTGAGGGATTCCATCAAGAGAGAGATGGGA 776
Query 843 AGAAAAATGCAGAAGGGAAAGGATATGAATGTCGAATCCCAGCAGGTCAAGGAAAAGACT 902
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
Sbjct 777 AGAAAAATGCAGAAGGGAAAGGATATGAATGGCGAATCCAAGCAGGTCAAGGAAAAGATT 836
Query 903 CGGACGCATATGTTCCACTGCATTTCTCGACTTGGAAGCTTAACTCAGACAGTAGCATTC 962
|||| || |||||||||||||||||||| ||||||||| |||| ||||||||||||||||
Sbjct 837 CGGAAGCCTATGTTCCACTGCATTTCTCTACTTGGAAGATTAAATCAGACAGTAGCATTC 896
Query 963 CATGCCCTCCAAAAGAGTGTGGTGGTTGTGGTACTTCAACACTGGAGTTGAGACGCTTAT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CATGCCCTCCAAAAGAGTGTGGTGGTTGTGGTACTTCAACACTGGAGTTGAGACGCTTAT 956
Query 1023 GGAAAAGAGATTGGGTTGAAAAATTAATAACGAATGCCGAGAAATGTACTCTGAATTTTA 1082
|||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 957 GGAAAAAAGATTGGGTTGAAAAATTAATAACGAATGCCGAGGAATGTACTCTGCATTTTA 1016
Query 1083 GGCCAACAGATGTGGATATTGTTCATGAATGTTCCTCATGCTCTACCAATTCTGATTCCA 1142
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1017 GGCCATCAGATGTGGATATTGCTCATGAATGTTCCTCATGCACTACCAATTCTGATTCCA 1076
Query 1143 TTAGAAGGCAGGCAGCTTTTAGGAAGAATGCTCATGATAATTTCTTATACTCCCCAAATG 1202
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1077 TTAGAAGGCAGGCAGCATTTAGGAAGAATGCTCATGATAATTTCTTGTACTCCCCAAATG 1136
Query 1203 CTGTTGATCTGGCTGAAGACGATATTGCTCATTTTCAGTTTCATTGGATGAAGGCAGAAC 1262
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1137 CTGTTGATCTGGCTGAAGACGATATTGCTCATTTTCAGTCGCATTGGATGAGGGCAGAAC 1196
Query 1263 CTGTGATAGTCAGAAATGTTCTCGAGAAGACATCTGGACTAAGTTGGGAACCAATGGTTA 1322
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1197 CTGTTATAGTTAGAAATGTTCTCGAGAAGACGTCTGGACTAAGTTGGGAACCAATGGTTA 1256
Query 1323 TGTGGAGGGCTTGTAGGGAAATGGATCCAAAGCGTAAAGGTACAGAAGAAGAGAC-AACA 1381
||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| || |
Sbjct 1257 TGTGGAGGGCTTGTAGGGAAATGGATCCAAAGCTTAAATGTAAAGAAGAAGAGACGAA-A 1315
Query 1382 AAAGTGAAAGCTTTGGATTGCTTGGACTGGTGTGAGGTTGAAATAAATCTGCATCAGTTT 1441
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1316 AAAGTCAAAGCTTTGGATTGCTTGGACTGGTGTGAGGTTGAAATAAATATTCATCAGTTT 1375
Query 1442 TTTGAGGGCTACTTAGAAGGCCGCATGCATAAAAACGGTTGGCCAGAAATGTTGAAATTG 1501
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TTTGACGGCTACTTAGAAGGCCGCATGCATAAAAACGGTTGGCCAGAAATGTTGAAATTG 1435
Query 1502 AAGGACTGGCCTCCCTCAGA-TTTATTTGAAAAGCGCCTTCCAAGGCATAATGCTGAGTT 1560
||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1436 AAGGATTGGCCTCCATCA-ACTTTATTTGAAAAGCGCCTTCCAAGGCATAATGCTGAGTT 1494
Query 1561 TATTGCCGCATTGCCTTTCTTTGATTACACTGACCCAAAGTCTGGTATCCTAAATCTCGC 1620
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1495 TATTGCTGCACTGCCTTTCTTTGATTACACTGATCCAAAGTCTGGTATCCTAAATCTCGC 1554
Query 1621 AACAAGATTTCCGGAAGGATCCTTGAAGCCAGATCTTGGACCCAAGACATACATTGCGTA 1680
||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AACAAGACTTCCAGAAAAATCCTTGAAGCCAGATCTTGGACCCAAGACATACATTGCGTA 1614
Query 1681 CGGTTTCCATGAAGAGCTTAATAGAGGAGATTCGGTGACAAAACTTCATTGTGACATTTC 1740
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1615 CGGTTTCCATGAAGAGCTTAATAGAGGAGATTCGGTGACAAAACTACATTGTGATATTTC 1674
Query 1741 TGACGCGGTCAATGTGTTGACACACACAGCTAAAGTGGAAATCCCTCCCGTCAAATACCA 1800
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1675 TGACGCGGTCAATGTGTTGACACACACAGCTAAAGTGGAAATCCCTCCCGCCAAATACCA 1734
Query 1801 AAACATAAAAGTACATCAGAAAAAATA-TGCAGAAGCCATGTTGCAGAAACAACAATACA 1859
|||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct 1735 AAACATAAAAGTACATCAGAAAAA-TAATGCAGAAGCCATGTTGCAGAAACAGCAATACA 1793
Query 1860 GTGGTCAAGTGAAAGAAGCCAGCGAACTTGAAAACAAGTCAATGAAAGAAGTGGATGAA- 1918
|||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1794 GTGGTCAAGTGACAGAAGCCAGCGAACTTGAAAATAAGTCACTGAAAGAAGTGGATGATG 1853
Query 1919 AGTAAAAAGGATTTAAAAGACAAGGCAGCTAACGAAGAACAATCAAATAACAGTTCAAGA 1978
| |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1854 A-TAAACAGGATTTAAAGGACAAGGCAGCTAACGAAGAACAGTCAAATAACAGTTCAAGA 1912
Query 1979 CCGTCGGGCTCAGGAGAAGCTGAGAAAGTAATTATTTCAAAAGAGGATAATCCCACACAA 2038
||| || |||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1913 CCG--GG-CTCACAAGAAGTTGAGAAAGTAAATATTTCAAAAGAGGATAATCCCACACAA 1969
Query 2039 CCTGCTGTGAGTACAAGTGTGGAATCCATACAAGAACAGAAGCTGGATGCTCCAAAAGAA 2098
||||||||||||| || |||||||||||||||||| ||||||||||||| || |||||||
Sbjct 1970 CCTGCTGTGAGTATAATTGTGGAATCCATACAAGAGCAGAAGCTGGATGTTC-AAAAGAA 2028
Query 2099 A-CTGATGGCAATACCAATGAGAGGTCAAAGGCTGTGCATGGTGGTGCTGTCTGGGATAT 2157
| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2029 AACAGATGGCAATACCAATGAGAGGTCAAAGGCTGTGCACGGTGGTGCTGTCTGGGATAT 2088
Query 2158 CTTTCGAAGAGAGGATGTTCCAAAACTTATTCAGTTTTTGAAAAGGCACGAGCATGAGTT 2217
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2089 CTTTCGAAGAGAGGATGTTCCAAAACTTATTCAGTTTTTGAAAAGGCACAAGCATGAGTT 2148
Query 2218 TCGTCACTTCAATAACGAACCCCTGGAATCCGTTATTCACCCAATTCATGACCAGACTAT 2277
||||||| |||||||||||||| || |||| ||| |||||||||||||||||||||||||
Sbjct 2149 TCGTCACATCAATAACGAACCCGTGAAATCTGTTGTTCACCCAATTCATGACCAGACTAT 2208
Query 2278 GTTCTTGAGTGATAGCCAGAAGAAACAGCTGAAAGAAGAATTTGATATAGAACCATGGAC 2337
||||||| |||| || |||||| |||||||||| || |||||||||||||||||||||||
Sbjct 2209 GTTCTTGTGTGAAAGTCAGAAGCAACAGCTGAAGGAGGAATTTGATATAGAACCATGGAC 2268
Query 2338 CTTTGAGCAACACCTCGGCGAAGCAGTCTTCATACCTGCAGGTTGTCCTCACCAAGTGAG 2397
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 2269 CTTTGAGCAACACCTCGGCGAAGCTGTTTTCATACCTGCAGGGTGTCCTCACCAAGTGAG 2328
Query 2398 GAATAGACAGTCTTGCATAAAGGTGGCACTAGACTTTGTGGCTCCTGAAAGCGTCGAAGA 2457
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2329 GAATAGACAGTCTTGCATAAAGGTGGCACTAGACTTTGTGGCTCCTGAAAGCGTTGAAGA 2388
Query 2458 ATGCCTTAGGCTAACACAGGAGTTCCGGAGATTGCCTAAAGACCACAGTTCTAGCGAGGA 2517
||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||
Sbjct 2389 ATGCCTTAGGCTAACACAGGAGTTCCGTAGATTACCGAAAGACCACAGATCTAGCGAAGA 2448
Query 2518 TAAATTGGAGCTTAAGAAAATTGCACTGTATGCTGCGAGTTCAGCCATAAGAGAGGTAAA 2577
||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||
Sbjct 2449 TAAATTGGAGCTTAAGAAAATAGCGCTTTATGCTGCGAGCTCAGCCATAAGAGAGGTAAA 2508
Query 2578 AGG-GCTAATGCAAAGCTCC-CGACGCAGTGATACCTAACAAATGACAAG 2625
|| ||||||||||| |||| |||||||||||| ||||||||||||||||
Sbjct 2509 -GGAGCTAATGCAAAACTCCACGACGCAGTGATGCCTAACAAATGACAAG 2557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105814700610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5