BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01010.1
Length=2091
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327678 jgi|Araly1|327678|fgenesh1_pm.C_scaffold_6002898 3238 0.0
Ahg470141 jgi|Araly1|470141|fgenesh2_kg.1__95__AT1G01340.1 1631 0.0
Ahg935611 jgi|Araly1|935611|scaffold_403599.1 436 2e-121
> Ahg327678 jgi|Araly1|327678|fgenesh1_pm.C_scaffold_6002898
Length=2094
Score = 3238 bits (1753), Expect = 0.0
Identities = 1991/2104 (95%), Gaps = 23/2104 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTTTGGCCGCAACAATCGTGTAAGGTTCAGAGATTGGATTTCAG-AGG------G 53
||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCTTTTGGCCGCGACAATCGTGTAAGGTTCAGAGATTGGATTTCAGAAGGATCATTA 60
Query 54 A--ACAGAGTATGGTTACGGAAGAAATAAAGCTAGACCATCTCTAAACACAGTTTTGAAG 111
| |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 61 ACCACAGAGTATGGTTACGGAAG--A-AAAGTTAGACCATCTCTAAACACAGTTTTGAAG 117
Query 112 AATGTTCGTAGAGGACTTAAGAAACCTTTAAGTTTTGGTTCA-CA-TAATAAGAAGAGAG 169
|||||||||||||| || ||||| || | | ||| | | |||||||||||
Sbjct 118 AATGTTCGTAGAGGGTTTGAGAAA-GGTTCTG-ATAAAATCAGGACTTTTAAGAAGAGAG 175
Query 170 ATTCTAATTCTAGTACCACTACA-CAGAAGAATATTATAAACCCACAAGGATCTTTTTTA 228
||||| | | | ||||| | | ||||||||||||||||||||||||| ||||||||
Sbjct 176 ATTCT-A-GC-ACCACCAC-AGATAAGAAGAATATTATAAACCCACAAGGCTCTTTTTTG 231
Query 229 CAGAACTGGAACAAAATCTTTCTTTTTGCTTCAGTGATTGCTTTGGCTATTGATCCATTG 288
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 232 CAGAACTGGAACAAAATCTTTCTTTTTGCTTCTGTGATTGCTTTGGCCATTGATCCATTG 291
Query 289 TTTTTCTATATTCCTATTGTTGATGGAGAAAGACACTGTCTTAATTTGCATCGTAACTTG 348
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||
Sbjct 292 TTTTTCTATATTCCTATTGTTGATGGAGAAAGAAACTGCCTTAATTTGCATCATAACTTG 351
Query 349 GAGATAGCAGCTAGTGTGCTTCGCACGTTTATAGATGCTTTCTACATCATTCACATTGTG 408
||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 352 GAGGTAGCAGCTAGTGTGCTTCGTACGTTTATAGATGCCTTCTACATCATTCACATTGTG 411
Query 409 TTTCAGTTTAGAACTGCTTATATCTCTCCTTCTTCTCGTGTTTTCGGAAGAGGCGAGTTG 468
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 412 TTTCAGTTTAGAACTGCTTATATTTCTCCTTCTTCTCGGGTTTTCGGAAGAGGCGAGTTG 471
Query 469 GTTGATGATCCTAAAGCTATAGCCATCAAGTACCTCTCCTCCTACTTCATCATCGATCTT 528
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||
Sbjct 472 GTTGATGATCCTAAAGCTATAGCCATTAAGTATCTCTCCTCCTACTTCATCATCGATGTT 531
Query 529 CTTTCTATCCTTCCACTCCCACAGCTTGTAGTCTTAGCTGTCATCCCCAATGTCAACAAG 588
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 532 CTCTCTATCCTTCCACTCCCACAGCTTGTAGTCTTAGCTGTTATCCCCAATGTCAACAAG 591
Query 589 CCGGTCTCTTTGATCACTAAGGACTATTTGATAACTGTCATATTTACTCAATACATTCCA 648
||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||||
Sbjct 592 CCGGTCTCTTTGATCACTAAGGAGTACTTGATTACTGTCATATTTACTCTATACATTCCC 651
Query 649 AGGATTCTTCGTATCTATCCACTTTACACTGAAGTTACAAGAACATCTGGCATAGTTACT 708
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AGGATTCTTCGTATTTATCCACTTTACACTGAAGTTACAAGAACATCTGGCATAGTTACT 711
Query 709 GAAACCGCTTGGGCTGGAGCTGCTTGGAACCTATCTCTCTATATGTTAGCCAGTCATGTG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GAAACCGCTTGGGCTGGAGCTGCTTGGAACCTATCTCTCTATATGTTAGCCAGTCATGTG 771
Query 769 TTTGGAGCCTTATGGTACTTAATATCAGTAGAACGAGAAGACAGATGCTGGCGTGAAGCT 828
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TTTGGAGCGTTATGGTACTTAATATCAGTAGAACGAGAAGACAGATGCTGGCGTGAAGCT 831
Query 829 TGTGAGAAGATACCAGAAGTGTGTAACTTTAGATTTCTCTACTGCGATGGAAACAGTAGT 888
|| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 832 TGCGAGAAGATACCAGAAGTATGTACCTTTAGATTTCTCTACTGCGATGGAAACAGTAGT 891
Query 889 GTTAGAAACGATTTCCTGACTACCTCGTGCCCGTTTATCAACCCTGATGATATAACAAAT 948
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 892 GTTAGAAACGATTTCCTGACAAACTCGTGCCCGTTTATCAACCCTGATGATATAACGAAT 951
Query 949 TCAACTGTCTTCAACTTTGGTATCTTTACTGATGCTTTAAAGAGTGGGATTGTTGAATCA 1008
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 952 TCAACGGTCTTCAACTTTGGCATCTTTACTGATGCTTTAAAGAGTGGGATTGTTGAATCA 1011
Query 1009 GATGATTTCTGGAAGAAGTTCTTCTACTGCTTCTGGTGGGGTTTGCGTAATTTAAGTGCA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GATGATTTCTGGAAGAAGTTCTTCTACTGCTTCTGGTGGGGTTTGCGTAATTTAAGTGCA 1071
Query 1069 TTGGGACAAAATCTCAATACAAGCAAATTCGTTGGGGAAATCATATTTGCTGTATCAATT 1128
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1072 TTGGGACAAAATCTCAATACGAGCAAATTCGTTGGGGAAATCATCTTTGCTGTATCAATT 1131
Query 1129 TGTATATCTGGACTAGTCTTATTCGCACTACTTATCGGCAATATGCAGAAATACTTGGAA 1188
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TGCATATCTGGACTAGTCTTATTCGCACTACTTATCGGCAATATGCAGAAATACTTGGAA 1191
Query 1189 TCAACTACAGTGAGGGAAGAGGAGATGAGAGTGAGAAAAAGAGATGCAGAGCAATGGATG 1248
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TCGACAACAGTTAGGGAAGAGGAGATGAGAGTGAGAAAAAGAGATGCAGAGCAATGGATG 1251
Query 1249 TCTCATCGAATGTTACCCGATGACTTGAGGAAACGTATCAGAAGGTATGAGCAGTACAAA 1308
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1252 TCTCATCGAATGTTACCCGATGACTTGAGGAAACGTATCAGAAGGTATGAACAATATAAA 1311
Query 1309 TGGCAGGAAACTAGAGGAGTAGAAGAAGAAAACCTTCTGCGTAATCTCCCTAAAGACCTC 1368
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TGGCAAGAAACTAGAGGAGTCGAAGAAGAAAACCTTCTGCGTAATCTCCCTAAAGACCTC 1371
Query 1369 AGGAGAGACATCAAACGCCATTTCTGCCTCGATCTTCTCAAGAAAGTACCTCTGTTCGAG 1428
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1372 AGGAGAGACATCAAACGCCATTTTTGCCTCGATCTTCTCAAGAAAGTACCTCTGTTCGAG 1431
Query 1429 ATAATGGATGAGCAATTGCTAGATGCCGTGTGTGACAAGCTAAAACCAGTGCTCTACACC 1488
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1432 ATAATGGATGAGCAATTGCTAGATGCCGTGTGTGACAAGCTAAAACCCGTGCTATACACT 1491
Query 1489 GAGAACAGCTATGCAATTCGAGAAGGAGATCCAGTGGAAGAGATGTTGTTTGTCATGAGA 1548
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1492 GAGAACAGCTATGCAATTCGAGAAGGAGACCCAGTGGAGGAGATGTTGTTTGTCATGAGA 1551
Query 1549 GGAAAACTGATGAGCGCCACCACAAACGGTGGCCGGACCGGCTTCTTTAACGCCGTATAC 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GGAAAACTGATGAGCGCCACCACAAACGGTGGCCGGACCGGCTTCTTTAACGCCGTATAC 1611
Query 1609 CTAAAACCTAGTGACTTTTGCGGCGAAGATCTTCTCACATGGGCATTAGATCCTCAATCT 1668
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1612 CTAAAACCTAGTGACTTTTGCGGCGAAGATCTTCTCACATGGGCATTGGATCCTCAATCT 1671
Query 1669 TCGTCTCATTTTCCGATATCGACTAGAACAGTTCAAGCTTTAACCGAAGTAGAAGCCTTT 1728
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1672 TCGTCTCATTTTCCGATATCGACGAGAACAGTTCAAGCTTTAACCGAAGTAGAAGCCTTT 1731
Query 1729 GCTCTT-GCAGCAGATGATCTCAAGCTTGTTGCTTCACAGTTCAGACGACTACATAGCAA 1787
||| || |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1732 GCT-TTAGCAGCAGATGATCTCAAGCTCGTTGCTTCACAATTCAGACGACTCCATAGCAA 1790
Query 1788 ACAGCTTCAACATACTTTCAGGTTTTATTCGGTTCAATGGAGAACTTGGGGTGCGTCTTT 1847
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1791 ACAGCTTCAACATACTTTCAGGTTTTATTCGGTACAATGGAGAACTTGGGGTGCGTCTTT 1850
Query 1848 CATACAAGCGGCGTGGCGGAGACATTGCCGGAGGAAACTAGCTAGATCATTAACCGAAGA 1907
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1851 CATACAAGCGGCGTGGCGGAGACATTGCCGGAGGAAACTAGCTAGGTCATTAACCGAAGA 1910
Query 1908 AGAAGATCGATTCCGAAACGCGATCACAAAACGCGAACGCAATGCGGCGTCTTCGTCTAG 1967
||||||||| |||||| ||||||| |||||||||||||| |||||||||||||||| ||
Sbjct 1911 AGAAGATCGGTTCCGAGACGCGATTGCAAAACGCGAACGCGATGCGGCGTCTTCGTCGAG 1970
Query 1968 CCTGGTTGCAACGTTATACGCGTCGCGGTTTGCTTCAAACGCGCTTCGCAATCTGCGTAC 2027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 CCTGGTTGCAACGTTATACGCGTCGCGGTTTGCTTCAAACGCGCTTCGCAATCTGCGTAC 2030
Query 2028 AAACAACCTACCTTTGCTACCTCCTAAACCCTCCGAGCCTGATTTCAGTCTCCGAAACCC 2087
|||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2031 CAACAACCTTCCTGTGCTCCCTCCTAAACCCTCCGAGCCTGATTTCAGTCTTCGAAACCC 2090
Query 2088 TTAA 2091
||||
Sbjct 2091 TTAA 2094
> Ahg470141 jgi|Araly1|470141|fgenesh2_kg.1__95__AT1G01340.1
Length=2342
Score = 1631 bits (883), Expect = 0.0
Identities = 1650/2012 (82%), Gaps = 85/2012 (4%)
Strand=Plus/Plus
Query 58 GAGTATGGTTACGGAAGAAATAAAGCTAGACCATCTCTAAACACAGTTTTGAAGAATGT- 116
||||||||||| ||||| | ||||||||||| ||| || ||| |||||| ||||||||
Sbjct 228 GAGTATGGTTATGGAAG--A-AAAGCTAGACCTTCTTTAGACAGAGTTTTCAAGAATGTA 284
Query 117 TCGTAGAGGACTT-AAGAAACCTTTAAGTTTTGGTTCACATAA-TAAGAAGA-GAGATTC 173
|| | ||| || ||||| || |||| ||| |||||||||| | || | |
Sbjct 285 AAGT-GGGGA-TTCAAGAAGCCATTAAATTTCCGTTCACATAAGGATCCTGACCACAAGG 342
Query 174 TAA-TTCTAGTACCACTACACAGAAGAATATTATAAACCCACAAGGA-TCTTTTTTACAG 231
|| |||||| | ||| | |||||| || |||||||| | |||| || ||| | |||
Sbjct 343 AAACATCTAGT---ATTACTCGGAAGAACATCATAAACCCGC-AGGATTCGTTTCTCCAG 398
Query 232 AACTGGAACAAAATCTTTCTTTTTGCTTCAGTGATTGCTTTGGCTATTGATCCATTGTTT 291
|| ||||||||||| ||||| ||||||| ||| |||||||||| |||||||||||||||
Sbjct 399 AATTGGAACAAAATATTTCTCTTTGCTTGTGTGGTTGCTTTGGCGATTGATCCATTGTTT 458
Query 292 TTCTATATTCCTATTGTTGATGGAGAAAGACACTGTCTTAATTTGCATC-GTAACTTGGA 350
||||| ||||| ||||| ||||| | ||| |||||||||| |||| | | || |||||
Sbjct 459 TTCTACATTCCCATTGTCGATGGCGCAAGGCACTGTCTTACTTTGGA-CAAAAAGTTGGA 517
Query 351 GATAGCAGCTAGTGTGCTTCGCACGTTTATAGATG-CTTTCTACATCATTCACATTGTGT 409
|||||| || ||| | ||||| || | || |||| |||| ||||| |||||||||||||
Sbjct 518 GATAGCTGCAAGTTTTCTTCGGACACTCATCGATGCCTTT-TACATTATTCACATTGTGT 576
Query 410 TTCAGTTTAGAACTGCTTATATCTCTCCTTCTTCTCGTGTTTTCGGAAGAGGCGAGTTGG 469
||||||| || || ||||| ||| |||||||||| || ||||| |||||||| || ||||
Sbjct 577 TTCAGTTCAGGACAGCTTACATCGCTCCTTCTTCGCGGGTTTTTGGAAGAGGTGAATTGG 636
Query 470 TTGATGATCCTAAAGCTATAGCCATCAAGTACCTCTCCTCCTACTTCATCATCGATCTTC 529
| |||||| |||| |||||||| || ||||| ||||| || ||||||||||| ||| | |
Sbjct 637 TAGATGATGCTAAGGCTATAGCTATAAAGTATCTCTCATCTTACTTCATCATTGATGTAC 696
Query 530 TTTCTATCCTTCCACTCCCACAGCTTGTAGTCTTAGCTGTCATCCCCAA-TGTCAACAAG 588
| ||||||||||| ||||||||| | ||||| ||||| || || | || |||||| ||
Sbjct 697 TCTCTATCCTTCCTCTCCCACAGATAGTAGTTTTAGCCGTTAT-TCAAAGCGTCAACCAG 755
Query 589 CCGGTCTCTTTGATCACTAAGGACTA--TTTGATAACTGTCATATTTACTCAATACATTC 646
|| ||||||||| |||| || ||||| || || | ||||||| || ||||||| |||
Sbjct 756 CCAGTCTCTTTGTTCACAAAAGACTACCTTAAAT-A-TGTCATAATTGCTCAATATGTTC 813
Query 647 CAAGGATTCTTCGTATCTATCCACTTTACACTGAAGTTACAAGAACATCTGGCATAGTTA 706
| ||||||| ||||| ||||| |||||||| ||||| || |||||||||||||| ||||
Sbjct 814 CTCGGATTCTCCGTATGTATCCGCTTTACACCGAAGTGACCAGAACATCTGGCATTGTTA 873
Query 707 CTGAAACCGCTTGGGCTGGAGCTGCTTGGAACCTATCTCTCTATATGTTAGCCAGTCATG 766
||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 874 CTGAAACAGCAAGGGCTGGAGCTGCTTGGAACCTCTCTCTCTATATGTTAGCCAGTCATG 933
Query 767 TGTTTGGAGCCTTATGGTACTTAATATCAGTAGAACGAGAAGACAGATGCTGGCGTGAAG 826
| |||||||| |||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 934 TATTTGGAGCTTTATGGTACTTAATCTCAGTAGAACGAGAAGACAGATGCTGGCAAGAGG 993
Query 827 CTTGTGAGAAGATACCAGAA-G-TGTG-TAACTTTAGATTTCTCTACTGCGATGGAAAC- 882
| || |||||| | || || | |||| ||| | ||||||||||| | || ||||
Sbjct 994 CATGCGAGAAG--A-CAAAAGGTTGTGATAA---GAAATTTCTCTACT--G-TGAAAACG 1044
Query 883 A--GTAGTGTTAGAAACGATTTCCTGACTACCTCGTGCCCGTTTATCAACCCTGATGATA 940
| | | |||||| ||| |||||||||| || || ||||| |||||| |||||| |||||
Sbjct 1045 ATCGCACTGTTAGCAACAATTTCCTGACCACTTCTTGCCCATTTATCGACCCTGGTGATA 1104
Query 941 TAACAAATTCAACTGTCTTCAACTTTGGTATCTTTACTGATGCT-TTAAAGAGTGGGATT 999
||||||| ||||| ||||||||||||| ||||| ||||||||| || ||||||||| |
Sbjct 1105 TAACAAACTCAACCATCTTCAACTTTGGCATCTTCACTGATGCTCTT-AAGAGTGGGGTC 1163
Query 1000 GTTGAATCAGATGATTTCTGGAAGAAGTTCTTCTACTGCTTCTGGTGGGGTTTGCGTAAT 1059
||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 1164 GTTGAATCACATGATTTCTGGAAGAAATTCTTCTACTGCTTCTGGTGGGGTCTGCGAAAT 1223
Query 1060 TTAAGTGCATTGGGACAAAATCT-CAATACAAGCAAATTCGTTGGGGAAATCATATTTGC 1118
| |||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 1224 CTGAGTGCATTGGGACAGAATCTCCAA-ACAAGCAAATTCGTTGGTGAAATCATATTTGC 1282
Query 1119 TGTATCAATTTGTATATCTGGACTAGTCTTATTCGCACTACTTATCGGCAATATGCAGAA 1178
| ||||||| || |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1283 TATATCAATCTGCATATCTGGACTAGTCTTATTTGCGCTACTTATCGGCAATATGCAGAA 1342
Query 1179 ATACTTGGAATCAACTACAGTGAGGGAAGAGGAGATGAGAGTGAGAAAAAGAGATGCAGA 1238
||||||||||||||| ||||| | || ||||| |||||||||||||| |||||||||||
Sbjct 1343 ATACTTGGAATCAACAACAGTTCGAGAGGAGGAAATGAGAGTGAGAAAGAGAGATGCAGA 1402
Query 1239 GCAATGGATGTCTCATCGAATGTTACCCGATGACTTGAGGAAACGTATCAGAAGGTATGA 1298
||| |||||||||||| |||||||||| || ||| ||||||||||||||||||| |||||
Sbjct 1403 GCAGTGGATGTCTCATAGAATGTTACCTGAAGACCTGAGGAAACGTATCAGAAGATATGA 1462
Query 1299 GCAGTACAAATGGCAGGAAACTAGAGGAGTAGAAGAAGAAAACCTTCTGCGTAATCTCCC 1358
|| || | |||||| || || |||||||| |||||||||| |||||| ||||| |||||
Sbjct 1463 ACAATATAGATGGCAAGAGACAAGAGGAGTCGAAGAAGAAACCCTTCTTCGTAACCTCCC 1522
Query 1359 TAAAGACCTCAGGAGAGACATCAAACGCCATTTCTGCCTCGATCTTCTCAAGAAAGTACC 1418
||||||||| || |||||||| ||||||||| ||||||| ||||| ||||||||||||||
Sbjct 1523 TAAAGACCTTAGAAGAGACATTAAACGCCATCTCTGCCTTGATCTCCTCAAGAAAGTACC 1582
Query 1419 TCTGTTCGAGATAATGGATGAGCAATTGCTAGATGCCGTGTGTGACAAGCTAAAACCAGT 1478
| |||| ||||||||||| || || || || || || || || || | ||||||||| ||
Sbjct 1583 TTTGTTTGAGATAATGGACGAACAGTTACTTGACGCGGTTTGCGATAGGCTAAAACCTGT 1642
Query 1479 GCTCTACACCGAGAACAGCTATGCAATTCGAGAAGGAGATCCAGT-GGAAGAGATGTTGT 1537
||||||||| |||||||| || | || || ||||||||||| || ||| || ||| |||
Sbjct 1643 GCTCTACACAGAGAACAGTTACGTGATCCGTGAAGGAGATCCTGTTGGA-GAAATGCTGT 1701
Query 1538 TTGTCATGAGAGGAAAACT-GATGAGCGCCACCACAAACGGTGGCCGGACCGGCTTCTTT 1596
|||| |||||||||| ||| | | || |||||||| || || || | | || |||||
Sbjct 1702 TTGTGATGAGAGGAAGACTCG-TAAGTGCCACCACTAATGGAGGAAGAAGTGGGTTCTTC 1760
Query 1597 AACGCCGT-ATACCTAAAACCTAGTGACTTT-TGCGGCGAAGATCTTCTCACATGGGCAT 1654
|| ||||| | ||||||| | ||||| ||| ||||| |||||||||||| | |||||||
Sbjct 1761 AATGCCGTGA-ACCTAAAGGCAAGTGA-TTTCTGCGGAGAAGATCTTCTCCCGTGGGCAT 1818
Query 1655 TAGATCCTCAATCTTCGTCTCATTTTCCGATATCGACTAGAACAGTTCAAGCTTTAACCG 1714
|||||||||||||||| ||||| ||||| || ||||| ||||||||||||||| | ||||
Sbjct 1819 TAGATCCTCAATCTTCTTCTCACTTTCCTATCTCGACAAGAACAGTTCAAGCTCTCACCG 1878
Query 1715 AAGTAGAAGCCTTTGCTCTTGCAGCAGATGATCTCAAG-CTTGTTGCTTCACAGTTCAGA 1773
|||| ||||||||||||||| |||| || ||||||||| || || |||||||| ||||||
Sbjct 1879 AAGTCGAAGCCTTTGCTCTTACAGCTGAGGATCTCAAGTCT-GTCGCTTCACAATTCAGA 1937
Query 1774 CGACTACATAGCAAACAGCTTCAACATACTTTCAGGTTTTATTCGGTTCAATGGAGAACT 1833
|| || |||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 1938 CGCCTCCATAGCAAGCAGCTCCAACATACTTTCAGGTTTTATTCAGTGCAATGGAGAACA 1997
Query 1834 TGGGGTGCGTCTTTCATACAAGCGGCGTGGCGGAGACATTGCCGGAGGAAACTAGCTA-G 1892
||| | | ||||| |||||||| |||||||||||| | || |||||||| |||| | |
Sbjct 1998 TGGAGCGTATCTTTTATACAAGCAGCGTGGCGGAGATACTGTCGGAGGAAGTTAGCAAAG 2057
Query 1893 ATCATTAAC-CGAAGAAGAAGATCGAT-TCCGA-AA-CGC-GA-TCA-CAA-A-ACGCGA 1943
|||||| | ||| |||||||| || | ||||| || ||| | | | ||| | | ||
Sbjct 2058 -TCATTA-CGCGATGAAGAAGAGCG-TCTCCGAGAAGCGCTGGCTAATCAAGATAAA-GA 2113
Query 1944 ACGCAATGCGGC----GT--CTTCGTC-T--AGCCT-GGT--TGCAACGTTATACGCGTC 1991
||||||||| || || ||||||| | ||||| || ||| | || ||||||||
Sbjct 2114 ACGCAATGCTGCAACCGTGTCTTCGTCCTTGAGCCTTGGAGGTGCT-C-TT-TACGCGTC 2170
Query 1992 GCGGTTT-GCTTCAAACGCGCTTCGCAATCTG 2022
||| ||| |||||||||||||||| |||||||
Sbjct 2171 GCG-TTTCGCTTCAAACGCGCTTCACAATCTG 2201
> Ahg935611 jgi|Araly1|935611|scaffold_403599.1
Length=2156
Score = 436 bits (236), Expect = 2e-121
Identities = 747/986 (76%), Gaps = 66/986 (7%)
Strand=Plus/Plus
Query 919 CCGTTTATC-AACCCTGATGATATAACAAATTCAACTGTCTTCAACTTTGGTATCTTTAC 977
||||| ||| | ||| || || || |||| || || || |||||||||||||| || |
Sbjct 943 CCGTTGATCGATCCC-GAAGAAATCTCAAACTCGACGGTTTTCAACTTTGGTATATTCGC 1001
Query 978 TGATGCTTTAAAGAGTGGGA-TTGTTGAATC-AGATGATTTCTGGAAGAAGTTCTTCTAC 1035
|||||| || || | ||| |||| || || ||| |||||| |||||||| ||||||
Sbjct 1002 TGATGCATTGCAGTCT-GGAGTTGTGGAGTCTAGA-GATTTCCCTAAGAAGTTTTTCTAC 1059
Query 1036 TGCTTCTGGTGGGGTTTGCGTAAT-TTAAGTGCATTGGGACAAAATC-TCAATACAAGCA 1093
|| |||||||||||| | || ||| || ||||| ||||| ||||| | | || || ||
Sbjct 1060 TGTTTCTGGTGGGGTCTCCGCAATCTT-AGTGCTTTGGGCCAAAA-CTTGAAGACGAGTG 1117
Query 1094 AATTCGTTGGGGAAATCATATTTGCTG-TA-TCAATTTGTATATCTGGACTAGTCTTATT 1151
|| | || || ||||| ||||| | || || || ||| | |||||||||||||| ||
Sbjct 1118 TCTTTGAAGGAGAGATCATTTTTGC-GATAGTC-ATATGTGTCTCTGGACTAGTCTTGTT 1175
Query 1152 CGCACTACTTATCGGCAATATGCAGAAATACTTGGAATCAACTACAGTGAGGGAAGAGGA 1211
|| || || || || |||||||||||||| ||| |||||||||| || || | |||||
Sbjct 1176 TGCTCTTCTCATTGGAAATATGCAGAAATATTTGCAATCAACTACTGTAAGAGTTGAGGA 1235
Query 1212 GATGAGAGTGAGAAA-AAGAGATGCAGAGCAATGGATGTCTCATCGAATGTTACCCGATG 1270
|||||||||| ||| ||||||||||||||||||||||||||||| ||||| || || |
Sbjct 1236 AATGAGAGTGA-AAAGGAGAGATGCAGAGCAATGGATGTCTCATCGGATGTTGCCAGACG 1294
Query 1271 A-CTTGAGGAAACGTATCAG-AAGGTATGAGCAGTACAAATGGCAGGAAACTAGAGGAGT 1328
| || ||| ||||||||| | || || || ||||| |||||||| ||||| | ||||||
Sbjct 1295 ATCT-GAGAAAACGTATCCGTAAA-TACGAACAGTATAAATGGCAAGAAACCAAAGGAGT 1352
Query 1329 AGAAGAAGAAAAC-CTTCTG-CGTAATCTCCCTAAAGACCTCAGGAGAG-ACATCAAACG 1385
|| |||||| | ||||| | || ||| || ||||| ||||| | || |||| |||||
Sbjct 1353 TGAGGAAGAAG-CTCTTCTCTC-TAGTCTTCCAAAAGATCTCAGAA-AGGACATTAAACG 1409
Query 1386 CCAT-TTCTGCCTCGATCTT-CTCAAGAAAG-TACCTCTG-TT-CGAGATAATGGATGAG 1440
|||| || || ||| || || ||||| |||| | ||| || || | || || |||||||
Sbjct 1410 CCATCTT-TGTCTCAAT-TTGCTCAA-AAAGGTGCCT-TGGTTTCAAGCTA-TGGATGAT 1464
Query 1441 CAATTGCTAGATGCCGTGTGTGACAAG-CT-AAAACCAGTGCTCTACACCGAGAACAGCT 1498
| || ||||| || | |||| | | || ||||| || || || || |||||||| |
Sbjct 1465 CGGTTACTAGACGCTTTATGTG-CTCGTCTCAAAACG-GTTCTTTATACAGAGAACAGTT 1522
Query 1499 ATGCAAT-T-CGAGAAGGAGATCCAGTGGAAGAGATGTTGTTTGTCATGAGAGGAAAACT 1556
| || | | || ||||| || |||||||| || ||||||||| ||||||||||||| ||
Sbjct 1523 A--CATTGTGCGTGAAGGTGAACCAGTGGAGGATATGTTGTTTATCATGAGAGGAAATCT 1580
Query 1557 GATGAGCGCCACCACAAACGGTGGCCGGACCGGCTTCTTTAACGCCGTATAC-CTAAAAC 1615
|| ||| |||| || | |||||| || |||||||| || | || | | || |
Sbjct 1581 AATAAGCACCACGACTTATGGTGGCAAAACTGGCTTCTTCAATTCGGT-T-CGCTTAGTT 1638
Query 1616 -CTAGTGACTTTTGCGGCGAAGATCTTCTCACATGGGCATTAGATCCTCAATCTTCGTCT 1674
|| |||| ||||| || | ||||||||||| |||||||||||||||| || || |
Sbjct 1639 GCTGGTGATTTTTGTGG--A-GATCTTCTCACTTGGGCATTAGATCCTC--TCA--GT-T 1690
Query 1675 CATT-TTCCG-ATATCGACTAGAACAGTTCAAGCTTTAACCGAAGTAGAAGCCTTTGCTC 1732
|| |||| || || | |||||| ||||||||||| || ||||| |||| ||||| ||
Sbjct 1691 CAAACTTCCCTATCTCTAGTAGAACCGTTCAAGCTTTGACAGAAGTCGAAGGCTTTGTTC 1750
Query 1733 T-TGCAGCAGATGATCTCAAGCTTGTTGCTTCACAGT-TCAGACGACTACATAGCAAACA 1790
| | |||| |||||||||||| |||||||| | |||| || | || || |||||||| ||
Sbjct 1751 TCT-CAGCTGATGATCTCAAGTTTGTTGCTACTCAGTATC-GCCGCCTCCATAGCAAGCA 1808
Query 1791 GCTTCAACATACT-TTCAGGTTTTATTCGGTTCAATGG-AGAACTTGGGGTGCGTCTTTC 1848
|| | ||| | | ||||||||||||||||| |||||| ||| | |||| || | |||
Sbjct 1809 ACTCCGACACA-TGTTCAGGTTTTATTCGGTGCAATGGCAGA-CATGGGCAGCATGTTTT 1866
Query 1849 ATACAAGCGGCGTGGCGGAGACATTG 1874
|||||||| || ||| |||||||||
Sbjct 1867 ATACAAGCAGCATGGAAGAGACATTG 1892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78656355925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5