BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01023.1
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490467 jgi|Araly1|490467|fgenesh2_kg.6__3601__AT4G01023.1 896 0.0
> Ahg490467 jgi|Araly1|490467|fgenesh2_kg.6__3601__AT4G01023.1
Length=688
Score = 896 bits (485), Expect = 0.0
Identities = 640/711 (90%), Gaps = 25/711 (4%)
Strand=Plus/Plus
Query 1 ATGTCAGATTCTGATGAAGCTAAAACGTCGGAGGAAGAATCTCAACTTGCTGAGCAAGAA 60
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAGATTCTGGTGAAGCTAAAACGTCAGAGGAAGAATCTCAACTTGCTGAGCAAGAA 60
Query 61 ACAGAGACTCAAGAAGGTGAAATGACTAAAAACTTAAAGAAAAGAGATCTTGATGCAGTA 120
|||||||||| ||||| |||||||||||||||||| |||||||||| |||||||| || |
Sbjct 61 ACAGAGACTCGAGAAGATGAAATGACTAAAAACTTGAAGAAAAGAGGTCTTGATGTAG-A 119
Query 121 -GAAGATGAAGATTCGAATAACGAAAGCTCCAGATTAGAGAAACTAGAGAAGAAGATaaa 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 120 CAAAGATGAAGATTCGAAAAACGAAAGCTCCAGATTAGAGAAACTAGAGAAGAAGGTCAA 179
Query 180 aaaaGAAACAGCGAGGAAGCTTGAAACTGACTTTGTGCTAACAGGGGAAGAGGATGATGA 239
||||| |||| |||||||||||||||||||| | | ||||||
Sbjct 180 AAAAGCAACATCGAGGAAGCTTGAAACTGAC----T--T---------------TGATGA 218
Query 240 TGCATTGCCCTTAGCCTGTTCCATTTGCCAAAACCCATTCTTGGATCCTGTTGTCACCAA 299
||||||||| ||||| |||||||||||| |||| |||||| |||||||||||||||||||
Sbjct 219 TGCATTGCCATTAGCATGTTCCATTTGCAAAAAACCATTCATGGATCCTGTTGTCACCAA 278
Query 300 CTGCAACCATTACTTCTGCGACAAGTGTGCTCTAAAGCATCACACTGAGAACGATACTTG 359
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |||
Sbjct 279 ATGCAACCATTACTTTTGTGACAAGTGTGCTCTAAAGCATCAAACTGAGAACGATAATTG 338
Query 360 TTTTGTGTGTAACGAGCCAACTCTAGGGCTTTTCGACACAGCCGTGGAGATCAAGGAAAG 419
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 339 TTTTGTGTGTAACGAGCCAACTCTAGGGGTTTTCAACACAGCCGTGGAGATCAAGGAAAG 398
Query 420 AATAGAGGAAGAACGTGAGAAAGCCAGAGCCATGGTAAAGGAAGTGACAGCAATGTTAGA 479
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 399 AATAGATGAAGAACGTGAGAAAGCCAGAGCCATGGTGAAGGAAGTGACAGCAATGTTGGA 458
Query 480 AAAGGCATCGACAATGGCGGATGACGCCAAGGGCGTAGCGCAAAAGGTTGTAAAAATGGT 539
||||||||||||||||||||||| ||| | ||| || || |||||| ||||||||||||
Sbjct 459 AAAGGCATCGACAATGGCGGATGGCGCGAGGGGAATATCGGAAAAGGCTGTAAAAATGGT 518
Query 540 GGAGGAGATTGAAACAATGGTGGAAAAAGTGGCGGCTATGGCCACAAAGGCGGGAGAAAC 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 519 GGAGGAGATTGAAACAATGGTGGAAAAAGTGGCGGCTATGGCGACAAAGGCGGCAGAAAC 578
Query 600 GGCGACAATGGCGGCAGATATGGTGAAAGAAGCTGAGGAGACGATGGAAACAGCTAAAGC 659
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 579 GGCGACAATGGCGGCAGATATGGTGCAAGAAGCTGAGGAGACGATGGAAACGGCTAAAGC 638
Query 660 TAATATGTCCAAAGCCTTTGTGGTAATGAAGTCGGTGAAT-TGGAACGTGT 709
||||||| | ||||| |||| |||||||||| |||| | | ||||||||||
Sbjct 639 TAATATGGCGAAAGCGTTTGCGGTAATGAAGACGGTCA-TGTGGAACGTGT 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26152321062
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5