BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01026.1
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943647 jgi|Araly1|943647|scaffold_604191.1 974 0.0
Ahg909840 jgi|Araly1|909840|Al_scaffold_0001_94 483 2e-135
Ahg327675 jgi|Araly1|327675|fgenesh1_pm.C_scaffold_6002895 270 1e-71
> Ahg943647 jgi|Araly1|943647|scaffold_604191.1
Length=672
Score = 974 bits (527), Expect = 0.0
Identities = 615/656 (94%), Gaps = 11/656 (2%)
Strand=Plus/Plus
Query 120 TGGTCGG-AGATGGAGATGATCGGAGGAGACGATACAGATACAGAGATGTA-CGGAGCTC 177
||||||| |||||||||||||||||||||||||| || || |||| | ||||||||
Sbjct 12 TGGTCGGAAGATGGAGATGATCGGAGGAGACGAT--AG----AGTGATG-ATCGGAGCTC 64
Query 178 TAGTGACGGCACAGTCCTTAAGGTTGCGTCATCTTCACCACTGCAGAGAGAACCAGTGTA 237
| |||||||| ||||| |||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 65 TGGTGACGGCGCAGTCTTTAAGGTTGCATCATCGTCACCATTGCAGAGAGAACCAGTGTA 124
Query 238 CCTCTGTTCTCGTCAAATACATTC-AAGCTCCTGTTCATCTTGTTTGGTCACTGGTGCGG 296
||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||
Sbjct 125 CCTCTGTTCTCGTCAAATACA-TCAAAGCTCCTGTTCATCTCGTTTGGTCACTTGTGCGG 183
Query 297 AGATTTGATCAGCCGCAGAAATACAAACCATTTATAAGCAGATGCACTGTAAATGGTGAT 356
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 184 AGATTTGATCAGCCGCAGAAATACAAACCATTTATAAGCAGATGCACTGTTAATGGTGAT 243
Query 357 CCTGAGATCGGTTGTCTCAGAGAAGTAAATGTCAAATCTGGTCTTCCAGCAACCACCAGT 416
|||||||| ||||||||||||||||| |||||||||||||||||||| || || ||||||
Sbjct 244 CCTGAGATTGGTTGTCTCAGAGAAGTTAATGTCAAATCTGGTCTTCCTGCGACTACCAGT 303
Query 417 ACAGAGAGATTGGAACAGCTTGATGATGAAGAACACATCCTCGGTATCAACATCATTGGT 476
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 304 ACCGAGAGATTGGAACAGCTTGATGATGAAGAACACATTCTCGGTATCAACATCATTGGT 363
Query 477 GGTGATCATAGACTTAAGAATTACTCTTCGATCTTGACTGTGCATCCGGAGATGATTGAT 536
|||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||| |||
Sbjct 364 GGTGATCACAGACTTAAGAATTACTCGTCGATCTTGACTGTACATCCAGAGATGATCGAT 423
Query 537 GGAAGGTCAGGAACTATGGTGATGGAGTCTTTTGTTGTGGATGTTCCTCAAGGCAACACC 596
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 424 GGGAGGTCAGGAACTATGGTGATTGAGTCTTTTGTTGTGGATGTTCCCCAAGGCAACACC 483
Query 597 AAAGATGATACATGTTACTTCGTGGAATCACTCATAAAGTGTAACCTCAAATCCTTGGCT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 AAAGATGATACATGTTACTTCGTGGAATCACTCATAAAGTGTAACCTCAAATCCTTGGCT 543
Query 657 TGTGTCTCTGAAAGATTGGCTGCTCAAGACATTACCAATTCCATCGCAACTTTCTGTAAC 716
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 544 TGTGTCTCTGAAAGATTGGCTGCTCAGGACATTACCAATTCCATCGCCACTTTCTGTAAC 603
Query 717 GCTTCCAATGGATACAGAGAGAAGAATCATACAGAAACCAACCTTTGAAGATTTGG 772
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 604 ACTTCCAACGGATACAGAGAGAAGAATCATACAGCAACCAACCTTTGAAGATTTGG 659
> Ahg909840 jgi|Araly1|909840|Al_scaffold_0001_94
Length=573
Score = 483 bits (261), Expect = 2e-135
Identities = 454/545 (83%), Gaps = 21/545 (4%)
Strand=Plus/Plus
Query 164 GATGTACGGAGCTCTAGTGACG--GCACAGTCCTTAAGGTTGCGTCATCTTCACCACTGC 221
||||||||||| ||| | |||| ||| | | | || || || ||||| || ||||||
Sbjct 30 GATGTACGGAGGTCTCGAGACGATGCA-A-TACGTACGGACGCATCATCAACATCACTGC 87
Query 222 AGAGAGAACCAGTGTACCTCTGTTCTCGTCAAATACATTC-AAGCTCCTGTTCATCTTGT 280
||||| |||||||||||||||| ||| |||||| ||| || |||||||||||||||| ||
Sbjct 88 AGAGAAAACCAGTGTACCTCTGCTCTTGTCAAACACA-TCAAAGCTCCTGTTCATCTCGT 146
Query 281 TTGGTCACTGGTGCGGAGATTTGATCAGCCGCAGAAATACAAACCATTTATAAGCAGATG 340
||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 147 TTGGTCACTTGTGCGGAGATTTGATCAGCCGCAGAAATACAAACCATTTGTGAGTAGATG 206
Query 341 CACTGTAAAT-GGTGATCCTGAGATCGGTTGTCTCAGAGAAGTAAATGTCAAATCTGGTC 399
|| |||| | ||||||||||| ||||| |||| |||||||| ||||| ||||||||||
Sbjct 207 CAGAGTAA-TCGGTGATCCTGAAATCGGGAGTCTTAGAGAAGTCAATGTTAAATCTGGTC 265
Query 400 TTCCAGCAACCACCAGTACAGAGAGATTGGAACAGCTTGATGATGAAGAACACATCCTCG 459
|||| ||||| || ||||| |||||||| |||| ||||||||||||||||| |||||||
Sbjct 266 TTCCTGCAACAACAAGTACTGAGAGATTAGAACTTCTTGATGATGAAGAACATATCCTCG 325
Query 460 GTATCAACATCATTGGTGGTGATCATAGACTTAAGAATTACTCTTCGATCT-TGACTGTG 518
||||||| ||||| ||||||||||| ||||||||||||||||| ||||| | ||||||||
Sbjct 326 GTATCAAAATCATCGGTGGTGATCACAGACTTAAGAATTACTCGTCGAT-TGTGACTGTG 384
Query 519 CATCCGGAGATGATTGATGGAAG-GTCAGGAACTATGGTGATGGAGTCTTTTGTTGTGGA 577
||||||||||| || || ||||| | | ||||| |||||||| || || ||||| || ||
Sbjct 385 CATCCGGAGATAATCGAGGGAAGAG-CTGGAACAATGGTGATTGAATCGTTTGTAGTTGA 443
Query 578 TGTTCCTCAAGGCAACACCAAAG-ATGATACATGTTACTTCGTGGAA-TCACTCATAA-A 634
||||||| |||| ||||| |||| | || || || ||||| || ||| | ||| || | |
Sbjct 444 TGTTCCTGAAGGTAACAC-AAAGGAAGAGACTTGCTACTTTGTTGAAGT-ACTTATCAGA 501
Query 635 GTGTAACCTCAAATCCTTGGCTTG-TGTCTCTGAAAGATTGGCTGCTCAAGACATTAC-C 692
||||| ||||| || || || | ||| ||||||||||||||| |||| ||||| || |
Sbjct 502 -TGTAATCTCAAGTCATTAGCA-GATGTTTCTGAAAGATTGGCTTCTCAGGACATAACTC 559
Query 693 AATTC 697
|||||
Sbjct 560 AATTC 564
> Ahg327675 jgi|Araly1|327675|fgenesh1_pm.C_scaffold_6002895
Length=3918
Score = 270 bits (146), Expect = 1e-71
Identities = 166/176 (94%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 991 TCACCAAGAGTCGTTGCAGGAACATTTTCCGTCTCTGAAATGATGAACCCTTGCCCCTTC 1050
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 3918 TCACCAAGAGTCGTTGCAGGAACATTTTCCGTCTCTGAAATGATGAACTCTTGCCCCCTC 3859
Query 1051 TTGTAAAACAATCTCACGGTTTCTCAAAACCGACATGTATTTGGCTACGGTGTGGCTATC 1110
|||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||| |||
Sbjct 3858 TTGTAAAACAATTTCACGGTTTCTTAAAACCGATATGTATTTGGCTACAGTGTGGCAATC 3799
Query 1111 AGAACATATATTCGTGTTTTTGACCACTCTTATAGGAGCTAAGCCTTTCTTCTTGA 1166
|||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3798 AGAACATAGATTTGTGTTTTTGACCACTCTTATAGGAGCTATGCCTTTCTTCTTGA 3743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43498248297
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5