BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01040.1
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352729 jgi|Araly1|352729|fgenesh1_pg.C_scaffold_6003322 1794 0.0
> Ahg352729 jgi|Araly1|352729|fgenesh1_pg.C_scaffold_6003322
Length=2610
Score = 1794 bits (971), Expect = 0.0
Identities = 1178/1273 (93%), Gaps = 33/1273 (3%)
Strand=Plus/Plus
Query 15 ATGGCGAGGAGGCGACGTTCATCGGCGGCGGAGAGTTTGAAACGGCGGAACGACGGATAC 74
||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1 ATGGCGAGGAGACGACATTCATCGGCGGCGGAGAGTTTGAAACGGCGGAAGGACGGAGAC 60
Query 75 GAGTCACTGTGTCAAGTCGTACAACAAGATTCAGATCGGAGACTCATCACCATTTTCGTA 134
|||||||||| |||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 61 GAGTCACTGTCTCAAGTCGGGGAACCGGACTCAGATCGGAGACTCATCACCATTTTCGTG 120
Query 135 ATCTTCTTCAT-TGTGATTCCCGCCGTTTCGATTGCT-GTGTACAAAGTCAAATTCGCTG 192
||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 121 ATCTTCTTCATCT-TGATTCCCGCCGTTTCGATTG-TCGTGTACAAAGTCAAATTCGCTG 178
Query 193 ATCGAGTCATCCAAACGGAATCATCAATACGTCAAAAGGGAATCGTTAAAACTGATATTA 252
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 179 ATCGAGTCATCCAAACGGAACCATCAATACGTCACAAGGGAATCGTTAAAACTGATATTA 238
Query 253 ATTTCCAAGAAATCCTCACTGAACATTCCAAGGCTTCAGAGAATTCAACTAGGCACTATG 312
|||||||||||||||||||||||||||| ||||| ||||||| ||||| | |||| |
Sbjct 239 ATTTCCAAGAAATCCTCACTGAACATTCTAAGGCCGCAGAGAA-TCAAC-A---ACTA-G 292
Query 313 ATTATCCAGTGTTAGCTTACATTACTCCATGGAACTCTAAAGGCTATGATATGGCAAAGA 372
|| || | |||| |||| |||||||||||| ||||||||||||||||
Sbjct 293 -----GCA---CTA---T-GATTA-TCCA--GAACTCTAAAGGTTATGATATGGCAAAGA 337
Query 373 TATTCAACTCAAAGTTTACACATTTATCGCCGGTATGGTACGACCTG-A-AG-A---GCC 426
|||| ||||||||||||||||||||||| |||||||||||||| ||| | || | |||
Sbjct 338 TATTTAACTCAAAGTTTACACATTTATCACCGGTATGGTACGATCTGAAGAGTAGTGGCC 397
Query 427 AAGGGTCTGGATTGGTTTTGGAAGGGAGACATAATGCTGATAAGGGATGGATTCAAGAGC 486
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 398 AAGGATCTGGGTTGGTTTTGGAAGGGAGACATAATGCTGATAAGGGATGGATCCAAGAGC 457
Query 487 TTCGGTCAAGAGGCAA-TGCACTGATATTACCAAGAGTTGTTCTAGAAGCAATTCCTGGG 545
||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 458 TTCGGTCAAGAGG-AAGTGCGCTGATATTACCAAGAGTTGTTCTAGAAGCAATTCCTGGG 516
Query 546 GAGATGCTTAACaaaaaaaaaCTAAGAGAGAAAGCTATCAGTCTTATTGTCACAGAGTGC 605
||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||||||
Sbjct 517 GAGATGCTTAAGAAAAAGAAACTAAGGGAGAAAGCTATCAATCTTATTGTCACAGAGTGC 576
Query 606 AAGGAAATGGAATACAATGGTATCGTGTTAGAGTCTTGGTCAAGGTGGGCAGCTTATGGC 665
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 AAGGAAATGGAATATGATGGTATCGTGTTAGAGTCTTGGTCAAGGTGGGCAGCTTATGGC 636
Query 666 GTTTTGCATGACCCTGATTTGCGGAAAATGGCACTGAAATTCGTAAAACAACTTGGAGAC 725
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 637 GTTTTGCATGACCCAGATATGCGGAAAATGGCACTGCAATTCGTAAAACAACTTGGAGAC 696
Query 726 GCTCTTCACTCAACGAGCTCACCAAGAAACAACCAGCAACATATGCAGTTCATGTATGTC 785
|| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 697 GCCCTTCACTCAACAAGCTCACTGAGAAATAACCAGCAACATATGCAGTTCATGTATGTC 756
Query 786 GTTGGTCCGCCTCGTTCAGAGAAGCTCCAAATGTACGATTTTGGGCCAGAAGATCTTCAA 845
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 757 GTTGGTCCACCTCGTTCAGAGAAGCTCCAAATGTACGATTTTGGGCCCGAAGATCTTCAA 816
Query 846 TTCTTGAAAGATTCGGTTGATGGGTTCTCTCTTATGACCTATGATTTCTCAAATCCCCAG 905
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 817 TTCTTGAAAGATTCGGTTGATGGGTTCTCTCTTATGACCTATGATTTCTCCAATCCCCAG 876
Query 906 AACCCTGGCCCCAATGCTCCTGTCAAGTGGATAGATTTAACTCTCAAGCTCCTGCTTGGG 965
||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 877 AACCCTGGCCCCAATGCACCTGTCAAGTGGATAGATTTGACCCTCAAGCTCCTGCTTGGT 936
Query 966 TCATCCAACAACATAGACTCAAACATAGCCAGGAAGGTTCTTCTTGGTATCAACTTTTAC 1025
|||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 937 TCATCCAATACCATAGACTCAAACATAGCCAGAAAAGTTCTTCTTGGTATCAACTTTTAC 996
Query 1026 GGCAACGATTTTGTAATCTCTGGAGATTCAGGAGGTGGAGGAGCAATCACCGGAAGGGAT 1085
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 997 GGAAACGATTTTGTAATCTCTGGAGATTCAGGAGGCGGAGGAGCAATCACCGGAAGGGAT 1056
Query 1086 TACCTCGCATTACTCCAGAAACACAAGCCAACTTTCCGTTGGGATAAAGAGAGCGGCGAA 1145
|||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||
Sbjct 1057 TACCTCGCATTACTCCAGAAACACAAACCAAATTTTCGTTGGGATAAAGAGAGCGGGGAG 1116
Query 1146 CATCTTTTCATGTATAGAGATGATAAGAACATCAAGCATGCTGTTTTCTATCCTACATTG 1205
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1117 CATCTTTTCATGTATAGAGATGACAAGAACATCAAGCATGCTGTTTTCTATCCTACATTG 1176
Query 1206 ATGTCAATCCTTCTACGGCTTGAGAATGCTCGTCTCTGGGGAATCGGCATTTCAATCTGG 1265
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1177 ATGTCAATCCTTCTACGGCTTGAGAATGCTCGTCTCTGGGGTATCGGCATTTCAATCTGG 1236
Query 1266 GAAATCGGACAAG 1278
|||||||||||||
Sbjct 1237 GAAATCGGACAAG 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54164328390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5