BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01060.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327672 jgi|Araly1|327672|fgenesh1_pm.C_scaffold_6002892 411 2e-114
> Ahg327672 jgi|Araly1|327672|fgenesh1_pm.C_scaffold_6002892
Length=240
Score = 411 bits (222), Expect = 2e-114
Identities = 235/241 (98%), Gaps = 1/241 (0%)
Strand=Plus/Plus
Query 4 ATGGATAACCATCGCAGGACTAAGCAACCCAAGACCAACTCCATCGTTACTTCTTCTTCT 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATAACCATCGCAGGACTAAGCAACCCAAGACCAACTCCATCGTTACTTCTTCTTCT 60
Query 64 GAAGGAACAGAAGTGAGTAGTCTTGAGTGGGAAGTTGTGAACATGAGTCAAGAAGAAGAA 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGGAACAGAAGTGAGTAGTCTTGAGTGGGAAGTTGTGAACATGAGTCAAGAAGAAGAA 120
Query 124 GATTTGGTCTCTCGAATGCATAAGCTTGTCGGTGACAGGTGGGAACTGATAGCTGGGAGG 183
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GATTTGGTCTGTAGAATGCATAAGCTTGTCGGTGACAGGTGGGAATTGATAGCTGGGAGG 180
Query 184 ATCCCAGGAAGAACCGCTGGAGAAATTGAGAGGTTTTGGGTCATGAAAAATTGAAAAGTG 243
||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 181 ATCCCAGGAAGAACCGCTGGAGAAATTGAGAGGTTTTGGATGATGAAAA-TTGAAAAGTG 239
Query 244 A 244
|
Sbjct 240 A 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12209788480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5