BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01070.1
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490463 jgi|Araly1|490463|fgenesh2_kg.6__3597__AT4G01070.1 2713 0.0
Ahg470140 jgi|Araly1|470140|fgenesh2_kg.1__94__AT1G01390.1 719 0.0
Ahg900600 jgi|Araly1|900600|Al_scaffold_0004_1250 80.5 4e-14
> Ahg490463 jgi|Araly1|490463|fgenesh2_kg.6__3597__AT4G01070.1
Length=1810
Score = 2713 bits (1469), Expect = 0.0
Identities = 1712/1826 (94%), Gaps = 29/1826 (2%)
Strand=Plus/Plus
Query 3 TGATTCACACAAACTCTCTATATAAAGCCA-TTACTTAATACCACACAAATTACaaaaaa 61
||||||| |||| ||||||||||||||||| ||||| |||||| |||||||||| |
Sbjct 1 TGATTCAGACAAGCTCTCTATATAAAGCCATTTACTCAATACCTCACAAATTAC-----A 55
Query 62 aaaaagaaaaaaggagataataatcacaaactacaaaagtagaaagaagaaaaaagaaca 121
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 56 AAAAAGAAAAAAGGAGATAATAATCACAAACTACAAAAGTAGAAAG-AG--AAAAGAAAA 112
Query 122 aag-T-ATCAGTTCTTGAATATTTGCATCAATGGAGGAATCCAAAA-CACCTCACGTTGC 178
||| | |||||||||||||| ||||||||||||||||||| ||||| | |||| |||||
Sbjct 113 AAGATCATCAGTTCTTGAATCTTTGCATCAATGGAGGAAT-CAAAAGCGTCTCATGTTGC 171
Query 179 GATCATACCAAGTCCGGGAATGGGTCATCTCATACCACTCGTCGAGTTTGCTAAACGACT 238
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 172 GATCATACCAAGTCCGGGAATGGGTCATCTCATCCCACTCGTCGAGTTCGCTAAACGACT 231
Query 239 CGTCCATCTTCACGGCCTCACCGTTACCTTCGTCATCGCCGGCGAAGGTCCACCATCAAA 298
||| || | ||||||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 232 CGTTCAACGTCACGGCTTCACCGTTACCTTCGTCATCGCCGGGGAAGGTCCACCGTCAAA 291
Query 299 AGCTCAGAGAACCGTCCTCGActctctcccttcttcaatctcctccgtctttctccctcc 358
|||||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||
Sbjct 292 AGCTCAGAGAACCGTCCTTGACTCTCTCCCTTCTTCGATCTCATCCGTCTATCTCCCTCC 351
Query 359 tgttgatctcaccgatctctcttcGTCCACTCGCATCGAATCTCGGATCTCCCTCACCGT 418
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CGTTGATCTCAGCGATCTATCTTCGTCCACTCGCATCGAATCTCGGATCTCCCTCACCGT 411
Query 419 GACTCGTTCAAACCCGGAGCTCCGGAAAGTCTTCGACTCGTTCGTGGAGGGAGGTCGTTT 478
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 412 GACTCGTTCAAACCCGGAGCTCCGGAAAGTCTTCGACTCGTTCGCGGCGGGAGGTCGTTT 471
Query 479 GCCAACGGCGCTCGTCGTCGATCTCTTCGGTACGGACGCTTTCGACGTGGCCGTAGAATT 538
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GCCGACGGCGCTCATCGTCGATCTCTTCGGTACGGACGCTTTCGACGTGGCCGTAGAATT 531
Query 539 TCACGTGCCACCGTATATTTTCTACCCAACAACGGCCAACGTCTTGTCGTTTTTTCTCCA 598
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CCACGTGTCACCGTATATTTTCTACCCAACAACGGCCAACGTCTTGTCGTTTTTTCTCCA 591
Query 599 TTTGCCTAAACTAGACGAAACGGTGTCGTGTGAGTTCAGGGAATTAACCGAACCGCTTAT 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TTTGCCTAAACTAGACGAAACGGTGTCGTGTGAGTTCAGGGAATTAACCGAACCGCTTAA 651
Query 659 GCTTCCTGGATGTGTACCGGTTGCCGGGAAAGATTTCCTTGACCCGGCCCAAGACCGGAA 718
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 652 GCTCCCTGGATGTGTACCGGTCGCCGGGAAAGATTTCCTTGACCCGGCCCAAGACCGGAA 711
Query 719 AGACGATGCATACAAATGGCTTCTCCATAACACCAAGAGGTACAAAGAAGCCGAAGGTAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 712 AGACGATGCATACAAATGGCTTCTCCATAACACCAAGAGGTACAAAGAAGCTGAAGGGAT 771
Query 779 TCTTGTGAATACCTTCTTTGAGCTAGAGCCAAATGCTATAAAGGCCTTGCAAGAACCGGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 772 TCTTGTGAATACCTTCTTTGAGCTAGAGCCAAATGCTATAAAGGCCTTGCAAGAACCAGG 831
Query 839 TCTTGATAAACCACCGGTTTATCCGGTTGGACCGTTGGTTAACATTGGTAAGCAAGAGGC 898
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 832 TCTAGATAAACCACCCGTTTATCCGGTTGGACCGTTGGTTAACATCGGTAAGCAAGAGGC 891
Query 899 TAAGCAAACCGAAGAGTCTGAATGTTTAAAGTGGTTGGATAACCAGCCGCTCGGTTCGGT 958
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TAAACAAACTGAAGAGTCTGAATGTTTAAAGTGGTTGGATAACCAGCCGCTCGGTTCGGT 951
Query 959 TTTATATGTGTCCTTTGGTAGTGGCGGTACCCTCACATGTGAGCAGCTCAATGAGCTTGC 1018
||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 952 TTTGTACGTGTCCTTTGGTAGTGGCGGTACACTCACATGTGAACAGCTCAATGAGCTTGC 1011
Query 1019 TCTTGGTCTTGCAGATAGTGAGCAACGGTTTCTTTGGGTCATACGAAGTCCTAGTGGGAT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1012 TCTTGGTCTTGCAGATAGTGAGCAACGGTTTCTTTGGGTCATACGAAGTCCAAGTGGGAT 1071
Query 1079 CGCTAATTCGTCGTATTTTGATTCACATAGCCAAACAGATCCATTGACATTTTTACCACC 1138
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1072 TGCTAATTCGTCGTATTTCGATTCACATAGCCAAACCGATCCATTGACATTTTTACCACC 1131
Query 1139 GGGATTTTTAGAGCGGACTaaaaaaaGAGGTTTTGTGATCCCTTTTTGGGCTCCACAAGC 1198
||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1132 AGGATTTTTAGAGCAGACCAAAAACAGAGGTTTTGTGATCCCTTTTTGGGCTCCACAAGC 1191
Query 1199 CCAAGTCTTGGCGCATCCATCCACGGGAGGATTTTTAACTCATTGTGGATGGAATTCGAC 1258
||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1192 CCAAGTCTTAGCACATCCATCCACGGGAGGGTTTTTAACTCATTGCGGATGGAATTCGAC 1251
Query 1259 TCTAGAGAGTGTAGTAAGCGGTATTCCACTTATAGCATGGCCATTATACGCAGAACAGAA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1252 TCTAGAGAGTGTAGTAAGCGGTATTCCACTTATAGCATGGCCATTATACGCTGAGCAGAA 1311
Query 1319 GATGAATGCGGTTTTGTTGAGTGAAGATATTCGTGCGGCACTTAGGCCGCGTGCCGGGGA 1378
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 1312 GATGAATGCGGTTTTGTTGAGTGAAGATATTCGTGCGGCACTTAGGCCTCATGCCGCGGA 1371
Query 1379 CGATGGGTTAGTTAGAAGAGAAGAGGTGGCTAGAGTGGTAAAAGGATTGATGGAAGGTGA 1438
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1372 CGATGGGTTAGTGAGTAGAGAAGAGGTGGCAAGAGTGGTAAAAGGATTGATGGAAGGTGA 1431
Query 1439 AGAAGGCAAAGGAGTGAGGAACAAGATGAAGGAGTTGAAGGAAGCAGCTTGTAGGGTGTT 1498
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1432 AGAAGGCAAAGGAGTGAGGAACAAGATGAAGGAATTGAAGGAAGCAGCTTGTAGGGTGTT 1491
Query 1499 GAAGGATGATGGGACTTCGACAAAAGCACTTAGTCTTGTGGCCTTAAAGTGGAAAGCCCA 1558
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GAAGGATGATGGGTCTTCCACAAAAGCACTTAGTCTTGTGGCCTTAAAGTGGAAAGCCCA 1551
Query 1559 CAAAAAAGAGTTAGAGCAAAATGGCAACCACTAAATATTTGATGTTCTAATATGATTTGT 1618
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1552 CAAAAAAGAGTTAGAGCAAAATGGCAACCACTAAATATTTGATGGTCTAATATGATTTGT 1611
Query 1619 ATAATCAACGGTGGGATTTGTGCAAATGTGTTTCTGTATGTATATGTATGTTCTACTTTT 1678
|||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 1612 ATAATCAACGGTCGGATTTGTGCAAATGTGTTTCTGTATGTATG-GC-TGTTCAACTTTT 1669
Query 1679 CTTTGCTTCGT-T-TGTCTCAACTTTTATTTGTATATGTTTTT--GGCTTTTGATTAATT 1734
|||||| |||| | ||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1670 CTTTGCATCGTATCTGTCTCAACTTTTATTTGTATATGTTTTTTTGGCTTTTGATCAATT 1729
Query 1735 CGTA-GA---AGATGTTGCAATTAAGATCAGCTTAGAAGAAGATGTTGCATATATAGTTA 1790
|||| | | ||| ||||||||||||| || |||||||||||| ||| || || |
Sbjct 1730 CGTAAGTTTTACATGGTGCAATTAAGATCCGCCTAGAAGAAGATGGTGCGTAG-TAC--A 1786
Query 1791 AATATTGTTCAAGAGAA-TCATCAAT 1815
| |||||||||||| || || |||||
Sbjct 1787 A-TATTGTTCAAGA-AACTCGTCAAT 1810
> Ahg470140 jgi|Araly1|470140|fgenesh2_kg.1__94__AT1G01390.1
Length=1572
Score = 719 bits (389), Expect = 0.0
Identities = 1032/1339 (77%), Gaps = 57/1339 (4%)
Strand=Plus/Plus
Query 180 ATCATACCAAGTCCGGGAATGGGTCATCTCATACCACTCGTCGAGTTTGCTAAACGACTC 239
|||||||| ||||| ||||||||||| ||||| ||| |||||||||| ||||| ||||||
Sbjct 43 ATCATACCGAGTCCCGGAATGGGTCACCTCATCCCATTCGTCGAGTTAGCTAAGCGACTC 102
Query 240 GTCCATCTTC-ACGGCCTCACCGTTACCTTCG-TCATCGCCGGCGAAGGTCCACCATCAA 297
|| | | | || | ||||| | || || | ||||| || | ||| | | || || |
Sbjct 103 GTTGAGC-ACGACTGTTTCACCATCACATT-GATCATCTCCAGTGAATCTTCGCCGTCTA 160
Query 298 AAGCTCAGAGAA-CCGTCCTCGActctctcccttcttcaatctcctccgtctttctccct 356
| || || | || |||| ||| ||||||||||||| || || ||||||| |||||||||
Sbjct 161 AGGCACA-AAAATCCGTTCTCAACTCTCTCCCTTCCTCCATAGCCTCCGTATTTCTCCCT 219
Query 357 cctgttgatctcaccgatctctcttcGTCCACT---CGCATCGAATCTCGGATC-TCCCT 412
|| | ||||| ||||| | || | |||||| || |||||| ||||| || | ||
Sbjct 220 CCCGCCGATCTTTCCGATGT-TC--CCTCCACTGCACGAATCGAAACTCGGGTCAT-GCT 275
Query 413 CACCGTGACTCGTTCAAACCCGGAGCTCCGGAAAG-TCTTCGACTCGTTCGTGGAGGGAG 471
|||| |||||||||| || |||| ||||||| || | || | ||| || | | | ||
Sbjct 276 CACCATGACTCGTTCCAATCCGGCGCTCCGG-GAGCTTTTTGGCTCCTT-ATCAACGAAG 333
Query 472 -GTCGTTTGCCAACGGCGCTCGTCGTCGATCTCTTCGGTACGGACGCTTTCGACGTGGCC 530
||| | || ||| |||||||||||| | || |||||||| |||||||| ||||||
Sbjct 334 AAACGTCTCCCGGCGGTTCTCGTCGTCGATATGTTTGGTACGGATGCTTTCGATGTGGCC 393
Query 531 GTAGAATTTCACGTGCCACCGTATATTTTCTACCCAACAACGGCCAACGTCTTGTCGTTT 590
|| || || |||||| |||| || |||||||| || ||| ||||||||||||||||||
Sbjct 394 GTTGACTTCCACGTGTCACCATACATTTTCTATGCATCAAATGCCAACGTCTTGTCGTTT 453
Query 591 TTTCTCCATTTGCCTAAACTAGACGAAACGGTGTCGTGTGAGTTCAGGGAATTAACCGAA 650
||||| || ||||| ||||| ||||||||||||||||||||||| ||| | |||||||||
Sbjct 454 TTTCTTCACTTGCCGAAACTTGACGAAACGGTGTCGTGTGAGTTTAGGTACTTAACCGAA 513
Query 651 CCGCTTATGCTTCCTGGATGTGTACCGGTTGCCGGGAAAGA-TTTCCTTGACCCGGCCCA 709
||| ||| | |||| || ||||| ||||| |||| || || ||| ||||| ||| ||
Sbjct 514 CCGGTTAAGATTCCCGGCTGTGTCCCGGTAACCGGTAAGGACTTT-CTTGATACGGTTCA 572
Query 710 AGACCGGAAA-GACGATGCATACAAATGGCTTCTCCATAACACCAAGAGGTACAAAGAAG 768
||||| |||| ||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 573 AGACC-GAAACGACGACGCATACAAATTGCTTCTCCATAACACCAAGAGGTACAAAGAAG 631
Query 769 CCGAAGGTATTCTTGTGAATACCTTCTTTGAGCTAGAGCCAAATGCTATAAAGGCCTTGC 828
| |||| ||||| |||||| | ||| | || ||||||| |||||||||||||| || |
Sbjct 632 CTAAAGGGATTCTAGTGAATTCATTCATCGATTTAGAGCCGAATGCTATAAAGGCTTTAC 691
Query 829 AAGAACCGGGTCTTGATAAACCACCGGTTTATCCGGTTGGACCGTTGGTTAACATTGGTA 888
||||||||| || ||||||||||| |||||| || |||| ||| ||||||||| ||
Sbjct 692 AAGAACCGGCTCCTGATAAACCACTGGTTTACCCAATTGGCCCGCTGGTTAACACAAGTT 751
Query 889 -AGCAAGAGGCTAA-GC--AAACCGAAGAGTCTGAATGTTTAAAGTGGTTGGATAACCAG 944
| | || | ||| | ||| | ||| || ||||||||| | ||| | || || ||
Sbjct 752 CATCT-GATGTTAACGTGGAAAAC-AAG--TCCGAATGTTTAGATTGGCTAGACAAGCAA 807
Query 945 CCGCTCGGTTCGGTTTTATATGTGTCCTTTGGTAGTGGCGGTACCCTCACATGT-GAGCA 1003
|| |||| |||||| ||||| | || ||||| || ||||| || |||||| || |||||
Sbjct 808 CCATTCGGCTCGGTTCTATATATATCATTTGGAAGCGGCGGAACACTCACA-GTTGAGCA 866
Query 1004 GCTCAATGAGCTTGCTCTTGGTCTTGCAGATAGTGAGCAACGGTTTCTTTGGGTCATACG 1063
| |||||||||||||||||||||||||||| || || |||||||| |||||| ||||||
Sbjct 867 GTTCAATGAGCTTGCTCTTGGTCTTGCAGAGAGCGATAAACGGTTTATTTGGGCCATACG 926
Query 1064 AAGTCCTAGTGG-GATCGCTAATTCGTCGTATTTTGATTCACATAGCCAAACAGATCCAT 1122
|||||| || || | | |||| |||||| ||||| || |||| |||||||| || || |
Sbjct 927 AAGTCCAAGCGGAG-TAGCTAGTTCGTCATATTTCAATCCACACAGCCAAACCGACCCCT 985
Query 1123 TGACATTTTTACCACCGGGATTTTTAGAGCGGACTaaaaa-aaGAGGTTTTGTGATCCCT 1181
| | ||||||||| ||||| ||||| || || ||| | || |||| | ||| | |
Sbjct 986 TTTCGTTTTTACCAATTGGATTCTTAGACCGAACCAAAGAGAA-AGGTCTGGTGGTTCGG 1044
Query 1182 TTTTGGGCTCCACAAGCCCAAGTCTTGGCGCATCCATCCACGGGAGGATTTTTAACTCAT 1241
| ||||||||||| | ||| || |||| ||||||||||| | || |||||||| ||
Sbjct 1045 TCATGGGCTCCACAGGTTCAAATCCTGGCTCATCCATCCACATGCGGGTTTTTAACACAC 1104
Query 1242 TGTGGATGGAATTCGACTCT-AGAGAGTGTAGTAAGCGGTATTCCACTTATAGCATGGCC 1300
||||||||||||||||| || ||| || | |||| |||| | ||||| |||||||||||
Sbjct 1105 TGTGGATGGAATTCGAC-CTTAGAAAGCATTGTAAACGGTGTACCACTCATAGCATGGCC 1163
Query 1301 ATTATACGCAGAACAGAAGATGAATGCGGTT--TTGTTGAGTGAAGATATTCGTGCGGCA 1358
|||| || || || ||||||||||| || || | | | || ||| || | |||||
Sbjct 1164 TTTATTTGCGGAGCAAAAGATGAATGCA-TTGCTTCTCGTG-GAGGATGTTGGAGCGGCT 1221
Query 1359 CTTAGGC-CGCGTGCCGG-GGACGATGGG-TTAGTTA-GAAGAGAAGAGGTGGCT-AGAG 1413
|| || | | ||| || ||| |||||| || || | | || ||||| |||| | ||||
Sbjct 1222 CTAAGAATC-CATGCGGGTGGA-GATGGGATT-GT-ACGGAGGGAAGAAGTGG-TGAGAG 1276
Query 1414 TGGTAAAAGGATTGATGGAAGGTGAAGAAGGCAAAGG-AGTGAGG-AACAAGATGAAGGA 1471
|||| || ||| |||||||||| |||||||| |||| | | ||| || || ||||||||
Sbjct 1277 TGGTGAAGGGACTGATGGAAGGAGAAGAAGGAAAAGCCA-T-AGGGAATAAAATGAAGGA 1334
Query 1472 GTTGAAGGAAGCAGCTTGT 1490
|||||| ||| || ||||
Sbjct 1335 GTTGAAACAAGGAG-TTGT 1352
> Ahg900600 jgi|Araly1|900600|Al_scaffold_0004_1250
Length=714
Score = 80.5 bits (43), Expect = 4e-14
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1009 ATGAGCTTGCTCTTGGTCTTGCAGATAGTGAGCAACGGTTTCTTTGGGTCATACG 1063
|||| |||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1 ATGACCTTGCTCTTGGTCTTGAAAAAAGTGAGCAACGGTTTCTTTGGGTCATACG 55
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69781328840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5