BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01090.1
Length=2895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490461 jgi|Araly1|490461|fgenesh2_kg.6__3595__AT4G01090.1 3454 0.0
> Ahg490461 jgi|Araly1|490461|fgenesh2_kg.6__3595__AT4G01090.1
Length=2582
Score = 3454 bits (1870), Expect = 0.0
Identities = 2322/2530 (92%), Gaps = 72/2530 (3%)
Strand=Plus/Plus
Query 255 TTTAATTCTTCTGAATTTTCTTTCCAAAAACCCCTTTTTAGAAAATTGGTTGCATCATAG 314
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 82 TTTAATTCTTCTGAATTTTCTTTCCAAAAATCCGTTTTTAGAAAATTGGTTGCATCAAAG 141
Query 315 AGATT--G-----G-TTCATTTATTCCCACCGGAGAA-GATCATCAAATTCGTCTTCTCA 365
||||| | | |||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 142 AGATTAAGCTTTTGATTCATTTATTTCCACCGGAGAAGGATCATCAAATTGGTCTTCTCA 201
Query 366 CCTATA-TCGCCGACGACATTCTTCACGTTGGaaaaaa-aCA-AAGCAAAACCCTAGAAA 422
|||| | ||| ||||||||||||||| ||| ||||||| | | |||||||||||||||||
Sbjct 202 CCTA-ACTCGGCGACGACATTCTTCAAGTT-GAAAAAAGA-AGAAGCAAAACCCTAGAAA 258
Query 423 TAGTGGCTGATGAGGTCGCGAGGCGATGTCTCTGAAGCAGAAGGTACGAGATCAGATGCT 482
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 259 CAGAAGCTGATGAGGTCACGAGGGGATGTCTCTGAAGCAGAAGGTACGAGATCAGATGCT 318
Query 483 GGTTCTTCAAGAAGCGAAGAAGAAACGAGTCTGAAGGAGAAACACTCAAATTCGCGAGCT 542
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 319 GGTTCTTCAAGAAGCGAAGAAGAAACGACTCTCAAGGAGAAACACTCAAATTCGCGAGCT 378
Query 543 GGGTCTCAAAGATCTGGAAAAAGCTTGAGAAAT---GA-----C-GAGCCTAATTACGGA 593
||||||||||||||||||||||||||||||||| || | ||||||||||| |||
Sbjct 379 GGGTCTCAAAGATCTGGAAAAAGCTTGAGAAATGAGGAGCTTGCTGAGCCTAATTATGGA 438
Query 594 TCAGATTCTTCATCTAAGAACACAAGCAGCAGCAACAACCCTATTGAGTATACAGAGCAT 653
||||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||
Sbjct 439 TCAGATTCTTCATCTAAGAACACAAGCAGCA-C--CAACCCAATTGAGTATACTGAGCAA 495
Query 654 GAACGAGCTGAGCTTTTAAGAAGGTTAGATTCTATCAAAGATCATCTACTTCGCGGTGGT 713
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 496 GAACGAGCTGAGCTTTTAAGAAGGTTAGATTCTATCAAAGATCATCTTCTT--C----GT 549
Query 714 GGTGGTGGTAATAATGTAGTTGATAAACCTAAAGAACCAGATCAGAATCAGCCTTTCCTT 773
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 550 GGTGGTGGTAATAATGTTGTTGATAAACCTAAAGAACCAGATCATAATCAGCCATTCCTT 609
Query 774 AGACCAGTTCATCTTCATGGTCATGCTAATCATAATCCTGGTCCTTCTTATTACCATCAG 833
|||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 610 AGACCAATCCATCTTCATGGTCCTCCTAATCATAATCCTGGTCCTTCTTATTACCATCCG 669
Query 834 TATCCAGAACCTATTCAATACCCTGGACCGGTTCATGGAATGTATCCTCAAGCTTATCAA 893
||||| || ||| ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 670 TATCCTGAGCCTGTTCCGTACCCTGGACCGGTTCATGGAATGTTTCCTCAAGCTTATCAA 729
Query 894 GATCCTTATGGG-T----A-CCAAAGAAGACCACCTCCAGTTCCTAATCCAAACTGGTAT 947
|||||||| ||| | | ||| |||||||||||||| ||||||||||| |||||||||
Sbjct 730 GATCCTTACGGGTTCCAAATCCATAGAAGACCACCTCCCGTTCCTAATCCGAACTGGTAT 789
Query 948 CCTCCTGGTCATTACCCTAATCAGATGGCTCGTCAGTATCCTGGAGGTCAATATGTTGAA 1007
||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 790 CCTCCCGGTCATTACCCTAATCAGATGGCTCGTCAGTTTCCTGGTGGTCAATATGTTGAA 849
Query 1008 CTTGGTCCTGATATAGTTGAGCCACATTCTTACTATCCAGCTACTCCTGGTAGGTACGGT 1067
||||||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 850 ATTGGTCCTGATATTGTTGACCCACATTCTTACTTTCCAGCTACTCCGGGTAGGTACGGT 909
Query 1068 GACCTGCCTCCGTATAGCCCGGTTTCGTCTCACCATCGTGAAGAGAAACTCGCTACACAG 1127
||| |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 910 GACATGCCTCCGTATAGCCCGGTTTCTTCTCACCATCGTGGCGAGAAACTCGCAACACAG 969
Query 1128 TACAGTGATATGCCTCCGTATAGCCCGGTTTCGTCTCACCATCGTGGCGAGAAACTCACG 1187
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 970 TACAGTGATATGCCTCCTTATAGCCCTGTTTCTTCTCACCATCGTGGCGAGAAACTCACA 1029
Query 1188 ACACCGTATAGTCCACGTGTTAATAACGGTTCGAGTTTTCCTTCTTCGATGGGCA-CTCC 1246
||||| |||||| |||||||| ||||| ||||||||||||||||||||||||| | ||||
Sbjct 1030 ACACCTTATAGTTCACGTGTTGATAACAGTTCGAGTTTTCCTTCTTCGATGGG-ATCTCC 1088
Query 1247 AGGTCCTCGAGGTGGTTATGCAAGGTGGCCGAGTGAACATGATTCTGAAATGGGCGGTGC 1306
|||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1089 AGGTCCTCGAGGTGGTTACGCAAGGTGGCCAAGTGATCATGATTCTGAAATGGGCGGTGC 1148
Query 1307 TTTTGCTCGTGGGTATGTTAAGAAAGCTGTATCGGATACTGGTGTTCGACGTTGTCATCC 1366
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1149 TTTTGCTCGTGGGTATGTTAAGAAAGCTGTATCGGATACTGGTGCTCGACGTTGTCATCC 1208
Query 1367 TCTTGCTGGTGGTGCTCCTTTTATAGCTTGTCATAGTTGCTTTGAGCTGCTTTACTTGCC 1426
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1209 TCTTGCTGGTGGTGCTCCTTTTATAGCTTGTCAAAATTGCTTTGAGCTGCTTTACTTGCC 1268
Query 1427 TAAGAAGAAGCTTTTGTCTCAGGAAAGGTTACATAAGCTGCAGTGCGGTGCTTGTTCTGA 1486
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1269 TAAGAAGAAGCTTTTGGCTCAGGAAAGGCAACATAAGCTGCAGTGCGGTGCTTGTTCTGA 1328
Query 1487 AGTTATTAGTTTCACAATCGTTGATAGGAAACTCGTTTTCTCTTCTGGTAATGAGGAAAC 1546
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1329 AGTTATTAATTTCACAATCGTCGATAGGAAACTCGTTTTCTCTTCTGGTAACGAGGAAAC 1388
Query 1547 AAAACCGGTCTCTCTAGAGGTTGAAGATAGAAACACAACAAACACAGTAGTGATAGAGGA 1606
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 1389 AAAACCGGTCTCTCTAAAGGTTGAAGATAGAAGCACAACAAACACAGTAGTGGTTGAGGA 1448
Query 1607 GGAAGTCTCTTCTGTTGATTTCAACAGCTCAGGTAGAGATATTCCACGTAAGGATGAAGA 1666
| ||||||||||||||||||||| ||| ||||| |||||||| | ||||||||||||
Sbjct 1449 --AC-TCTCTTCTGTTGATTTCAACAACTCGGGTAGCGATATTCCGCCTAAGGATGAAGA 1505
Query 1667 AGAACCAGTGCAAGAACTGAGAAA-TCATCAGGATACTATTACTACGCAAAGCGTCCGCT 1725
|||||||||||| ||| | | ||| ||||||||||||||| ||||||| |||| |
Sbjct 1506 AGAACCAGTGCAGGAATTTA-AAAGTCATCAGGATACTAT------GCAAAGCATCCGGT 1558
Query 1726 CTGAATCTCAACACTCAGATGATGAAGAAAGATCGAGCAATTCTAGTGAACAACAACAGA 1785
||||||||||| |||| ||||||||||| ||||| |||| |||||||||||||||||| |
Sbjct 1559 CTGAATCTCAAAACTCGGATGATGAAGAGAGATCTAGCATTTCTAGTGAACAACAACAAA 1618
Query 1786 AGGAGGTCAAATCTGTTCGTCGGCGAGGTAAAGGGTCAAAAGCACCTGAACCCGCTGCTC 1845
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1619 AGGAGGTCAAATCTGTTCGTCGGCGAGGTAAAGGGTCAAAAGCGCCTGAACCCGCTGCTC 1678
Query 1846 CTGATAATGCCAGTCTCCTTGAACTTTTTGAGTATTCTAATGTAAACAGAGCTGCACTCG 1905
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CTGATAATGCCAGTCTACTTGAACTTTTTGAGTATTCTAATGTAAACAGAGCTGCACTCG 1738
Query 1906 CTTATGGAATGGCGCAGTTAGGTTATGAAAAGCCAGATAAGCAAAAGTCTTTCATGACAC 1965
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1739 CTTACGGAATGGCGCAGTTAGGTTATGACAAGCCAGATAAGCAAAAGTCTTTCATGACAC 1798
Query 1966 AGGACTCGCTGAAACCAGAATCAGTAGCTACAGAGACAGAGGTTTCTTACAATGGATACT 2025
||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1799 AGGACTCGCTGCAACCCGAATCAGTAGCTACAGAGACAGAGGTTTCTTACAACGGATATT 1858
Query 2026 CTAACACCGAGATCTCAGAAGATTCAAGGTACTCAAACAGAAAGGGTAGTGAGTACGGTT 2085
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1859 CTAACACCGAGATCTCAGAAGAGTCGAGGTACTCAAACAGAAAGGGTAGTGAGTACGGTT 1918
Query 2086 CGACAGAGATCACAACGAGGTCCTCTACTGATCAAAACGAAGACCAGATGAAGTCATTAG 2145
| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 1919 CCACAGAGATCACAACGAGGTCCTCTACTGATCGAAATGAAGATCAGATGAAGTCATTAG 1978
Query 2146 AGGTTTGGGTTAATGGACATCTTATACCAGAAGATCTTGTTAGCAGTGCTGAGAAATTAG 2205
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1979 AGGTTTGGGTTAACGGACATCTTATACCAGAAGATCTGGTTAGTAGTGCTGAGAAATTAG 2038
Query 2206 CTGGACCAATCCAAGCTGGAAAGTATTGGTATGATTACCGAGCTGGGTTCTGGGGAGTGA 2265
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2039 CTGGACCAATCCAAGCCGGAAAGTATTGGTATGATTACCGAGCTGGGTTCTGGGGCGTGA 2098
Query 2266 TGGGCAAACCGTGTCTCGGTATAATACCTCCATTTATTGAAGAGTTTAGCCATCCAATGC 2325
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2099 TGGGCAAACCGTGTCTCGGTATAGTACCTCCATTTATTGAAGAGTTTAGCCATCCAATGC 2158
Query 2326 TGGATAACTGCGCTGCAGGAAACACAGACGTGTTTGTGAATGGAAGAGAGCTTCACAAGA 2385
||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2159 CGGATAACTGTGCTGCTGGAAACACAGAAGTGTTTGTGAATGGAAGAGAGCTTCACAAGA 2218
Query 2386 GAGATTTCGAGTTACTTGTGGGTCGTGGTCTGCCTAGAGACAAGAACCGTTCTTACATTG 2445
||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2219 GAGATTTTGAGTTACTTGTGGGTCGTGGTCTTCCTCGAGACAAGAACCGTTCTTACATTG 2278
Query 2446 TTGATATATCAGGAAGAATCCTTGATCAAGATTCAGGAGAAGAACTTCACAGCCTTGGCA 2505
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 2279 TTGATATATCAGGAAGAATCCTTGATGGAGATTCAGGGGAAGAACTTCATAGCCTTGGCA 2338
Query 2506 AATTAGCCCCAACGATTGAGAAAGTGAAGCATGGATTTGGTATGAGAGTTCCAAGATCAT 2565
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2339 AATTAGCCCCAACGATTGAGAAGGTGAAGCATGGATTTGGTATGAGAGTTCCAAGATCAT 2398
Query 2566 TAGCTTCATGAAAACTCCCCCTAGTAACAACTA--CA-CAAC-CAA--AA-TATGATTCT 2618
||||||||||||| ||| | |||||||| | || || |||| ||| || |||||||||
Sbjct 2399 TAGCTTCATGAAAGCTCTCACTAGTAACGAGTAAACAACAACACAACCAAATATGATTCT 2458
Query 2619 GCTTCTTGTTTCCATCTTCATATTATTTATTTGTTAAACACAACTGTAAAGTGt--tttt 2676
|| |||| |||| ||||||||||||||||||||||||| |||||||||| ||||
Sbjct 2459 GCCTCTTTTTTCAATCTTCATATTATTTATTTGTTAAATT----TGTAAAGTGTGCTTTT 2514
Query 2677 t--acatctt-gattttgatttttggtattctttttA-AAA-TATCTTTGGGGAAATGTC 2731
| || || |||||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 2515 TTTACGG-TTAGATTTTGATTTTTGGTATTCTTTTTACAAAATATCTTTGGGGAATTGTC 2573
Query 2732 TGTATGTTTT 2741
||||| ||||
Sbjct 2574 TGTAT-TTTT 2582
Score = 86.1 bits (46), Expect = 1e-15
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 184 AAACCTTCCAGCTCAAGTTTGGTAGTAAGTAAGCAGACATTTAATCCCC 232
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 33 AAACCTTCCAGCTCAAGTTTGGTAGTAAGTAAGCAGCCATTTAATCCCC 81
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109280912905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5