BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01100.2
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490460 jgi|Araly1|490460|fgenesh2_kg.6__3594__AT4G01100.1 1166 0.0
Ahg951689 jgi|Araly1|951689|scaffold_108900001.1 453 2e-126
> Ahg490460 jgi|Araly1|490460|fgenesh2_kg.6__3594__AT4G01100.1
Length=1621
Score = 1166 bits (631), Expect = 0.0
Identities = 714/753 (95%), Gaps = 10/753 (1%)
Strand=Plus/Plus
Query 672 TCATAGTGGCATACTGTACATGTATCGTCAGCGGACCGGAAATGAAAATGCCCAACTTAC 731
||| || |||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 582 TCAAAG-GGCATACTGTACATGTATCGCCAACGGACGGGAAATGAAAATGCCCAACTTAC 640
Query 732 TCCTCTTTTACGGCTTGGAGCTGGTGCAACCGCTGGGATAATAGCCATGTCTGCAACGTA 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TCCTCTTTTACGGCTTGGAGCTGGTGCAACCGCTGGGATAATAGCCATGTCTGCAACGTA 700
Query 792 CCCGATGGATATGGTTCGTGGAAGGCTAACTGTCCAGACCGCAAATTCTCCTTATCAATA 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 CCCGATGGATATGGTTCGTGGAAGGCTAACTGTCCAGACCGCAAATTCTCCTTATCAATA 760
Query 852 TAGAGGAATTGCCCATGCTTTGGCAACTGTCCTGCGAGAGGAAGGTCCACGGGCCTTGTA 911
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 761 TAGAGGGATTGCCCATGCTTTGTCAACTGTCCTGCGAGAGGAAGGTCCACGGGCCTTGTA 820
Query 912 CCGTGGTTGGCTTCCATCAGTGATTGGAGTTGTTCCATATGTGGGCTTGAACTTTTCGGT 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 821 CCGTGGTTGGCTTCCATCAGTGATTGGAGTTGTTCCATATGTGGGCTTGAACTTTGCGGT 880
Query 972 GTATGAGTCTCTAAAGGACTGGCTAGTTAAAGAGAACCCATACGGTCTAGTAGAAAACAA 1031
|||||||||||||||||||||||| ||||||| ||||||| ||||| |||| ||||||
Sbjct 881 CTATGAGTCTCTAAAGGACTGGCTACTTAAAGACAACCCATTGGGTCTTGTAGTAAACAA 940
Query 1032 TGAGCTGACGGTTGTAACGAGGCTCACTTGTGGTGCAATAGCTGGAACAGTTGGTCAAAC 1091
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TGACCTGACCATTGTAACGAGGCTCACTTGTGGTGCAATAGCTGGAACAGTTGGTCAAAC 1000
Query 1092 AATTGCTTATCCACTGGATGTGATTCGTAGGAGAATGCAAATGGTCGGGTGGAAAGATGC 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AATTGCTTATCCACTGGATGTGATTCGTAGGAGAATGCAAATGGTCGGGTGGAAAGATGC 1060
Query 1152 TTCCGCTATTGTAACAGGCGAAGGGAGAAGCACAGCTTCACTTGAATACACTGGTATGGT 1211
||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 1061 TTCCGCTGTTGTTACAGGCGAAGGGAGAAGCAAAGCTTTGCTTGAATACACTGGTATGAT 1120
Query 1212 CGATGCATTTAGAAAAACAGTTCGTCATGAAGGCTTTGGAGCATTGTACAAGGGTTTGGT 1271
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1121 GGATGCATTTAGAAAAACAGTTCGTCATGAAGGCTTCGGAGCATTGTACAAGGGTTTGGT 1180
Query 1272 CCCCAATTCAGTGAAGGTTGTACCATCGATTGCGATTGCATTTGTGACATATGAGATGGT 1331
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1181 CCCCAATTCAGTGAAGGTTGTACCATCCATTGCGATTGCATTTGTGACATATGAGATGGT 1240
Query 1332 GAAAGACGTTTTAGGAGTGGAGTTTAGGATATCAGACTGAGTCA--TTTGATATCTCAAT 1389
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1241 GAAAGAAGTTTTAGGAGTGGAGTTTAGGATATCAGACTGAGTCACATTTGATATCTCAAT 1300
Query 1390 --G---C-C-GTCAAGAAAGCGCACTTCTATTT 1415
| | | | ||||||| |||||||||||||
Sbjct 1301 ACGTTTCGCCGACAAGAAAACGCACTTCTATTT 1333
Score = 797 bits (431), Expect = 0.0
Identities = 559/615 (91%), Gaps = 31/615 (5%)
Strand=Plus/Plus
Query 23 TGTGTCTTTTGGCTTTTATCATCGCCGCCGGGACACAACACA-A-AGAGGGGCTTAGATT 80
|||||| ||||||||||||||||||||||||||||||| | | | | |||||||||||||
Sbjct 1 TGTGTCCTTTGGCTTTTATCATCGCCGCCGGGACACAAAAGAGAGAAAGGGGCTTAGATT 60
Query 81 TGTGCTTTCGAGAAGTGCTTTGATCTCTCTTCTCCATTTTCACTTCTAATCGGAGATTTC 140
|||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 61 TGTGCTTTCGAGAAGTGCTTTGATCTCTCTTCTCCA--CTCACTTCTAATCAGAGA-TT- 116
Query 141 TCTTAGGGTTTTGTTATTCGTTGAGAGATCGAATTAAAAACTTGTGAAGAAATCTCTAGG 200
|| ||||| | | | | || |||||||||||||||||||||||
Sbjct 117 TC---------TGTTA------G-G-G-T----TT--AAACTTGTGAAGAAATCTCTAGG 152
Query 201 GATCGTAATCGTTGTTGGTGTGGGGTATTACACTGATTCCGGTTTGAACCTGAATCGTAT 260
||||||||||| |||||||||||||||||||||||||| |||||| ||||||| || |
Sbjct 153 GATCGTAATCG-TGTTGGTGTGGGGTATTACACTGATTGCGGTTTCTGCCTGAATTGTCT 211
Query 261 CTATCAATCGATGGCATCAGAGGATGTGAAAAGAACAGAATCAGCAGCTGTGTCAACGAT 320
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 212 CTATCAATCGATGGCATCAGAGGATGTGAAAAGAACTGAATCAGCAGCTGTTTCAACGAT 271
Query 321 CGTAAATCTGGCGGAGGAAGCGAGGGAAGGAGTCAAAGCTCCGAGTTATGCTTTTAAAAG 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 CGTAAATCTGGCGGAGGAAGCGAGGGAAGGAGTCAAAGCTCCGAGTTATGCTTTTAAAAG 331
Query 381 CATCTGCAAGTCTCTTTTTGCCGGTGGTGTCGCTGGTGGAGTGTCACGAACTGCTGTTGC 440
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 332 CATCTGCAAGTCTCTTTTTGCCGGTGGTGTCGCTGGTGGAGTGTCACGAACTGCAGTTGC 391
Query 441 ACCTCTGGAAAGGATGAAGATATTACTTCAGGTCCAAAATCCGCATAATATAAAGTACAG 500
|||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 392 ACCTTTGGAAAGGATGAAGATTTTACTTCAGGTCCAAAATCCGCATAGTATAAAGTACAG 451
Query 501 TGGGACAGTCCAAGGATTGAAGCATATTTGGAGAACCGAGGGACTTCGTGGACTGTTCAA 560
||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 452 TGGCACAGTCCAAGGGCTGAAGTATATTTGGAGAACCGAGGGCCTTCGTGGACTGTTCAA 511
Query 561 AGGAAATGGCACCAACTGTGCTCGTATTGTTCCTAATTCGGCTGTTAAAtttttcagcta 620
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 512 AGGAAATGGCACCAACTGTGCTCGTATTGTTCCAAATTCGGCTGTGAAATTTTTCAGCTA 571
Query 621 tgagcaagcttcaaa 635
|||||||||||||||
Sbjct 572 TGAGCAAGCTTCAAA 586
> Ahg951689 jgi|Araly1|951689|scaffold_108900001.1
Length=412
Score = 453 bits (245), Expect = 2e-126
Identities = 270/282 (96%), Gaps = 2/282 (1%)
Strand=Plus/Plus
Query 1110 TGTGATTCGTAGGAGAATGCAAATGGTCGGGTGGAAAGATGCTTCCGCTATTGTAACAGG 1169
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1 TGTGATTCGTAGGAGAATGCAAATGGTCGGGTGGAAAGATGCTTCCGCTGTTGTTACAGG 60
Query 1170 CGAAGGGAGAAGCACAGCTTCACTTGAATACACTGGTATGGTCGATGCATTTAGAAAAAC 1229
|||||||||||||| ||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 61 CGAAGGGAGAAGCAAAGCTTTGCTTGAATACACTGGTATGATGGATGCATTTAGAAAAAC 120
Query 1230 AGTTCGTCATGAAGGCTTTGGAGCATTGTACAAGGGTTTGGTCCCCAATTCAGTGAAGGT 1289
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTTCGTCATGAAGGCTTCGGAGCATTGTACAAGGGTTTGGTCCCCAATTCAGTGAAGGT 180
Query 1290 TGTACCATCGATTGCGATTGCATTTGTGACATATGAGATGGTGAAAGACGTTTTAGGAGT 1349
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TGTACCATCCATTGCGATTGCATTTGTGACATATGAGATGGTGAAAGAAGTTTTAGGAGT 240
Query 1350 GGAGTTTAGGATATCAGACTGAGTCA--TTTGATATCTCAAT 1389
|||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 GGAGTTTAGGATATCAGACTGAGTCACATTTGATATCTCAAT 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5