BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01110.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490459 jgi|Araly1|490459|fgenesh2_kg.6__3593__AT4G01110.1 1338 0.0
> Ahg490459 jgi|Araly1|490459|fgenesh2_kg.6__3593__AT4G01110.1
Length=959
Score = 1338 bits (724), Expect = 0.0
Identities = 904/987 (92%), Gaps = 28/987 (3%)
Strand=Plus/Plus
Query 51 GAGAAGAACAGAGATCATCAAAGAAGTTTAACGACCACCACCGGAGACTAAGAAATGGCG 110
|||||||||||||||||||||||||||| ||||||||||||| | ||| |||| ||||||
Sbjct 1 GAGAAGAACAGAGATCATCAAAGAAGTTCAACGACCACCACCCGCGACGAAGATATGGCG 60
Query 111 GGAGAGACTCTACTTAAACCGGTGCTTCAAAAACCACCAGGCTACCGTGAGCTCCACTCG 170
| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 GCAGAAACTCTACTTAAACCGGTGCTTCAAAAACCACCAGGCTATCGTGAGCTCCATTCG 120
Query 171 CAACCTCAAACTCCACTCGGTTCATCTTCATCATCATCATCAATGCTTCGTCGCCCACCA 230
|||||||||||||||||||| | |||||||||||||||| ||||||||||||||||
Sbjct 121 CAACCTCAAACTCCACTCGG---A---TCATCATCATCATCAACGCTTCGTCGCCCACCA 174
Query 231 AAACATGCCATTCCTGCGGCGTTTTATCCGACGAAGAAGAGACAATGGAGTCGTTGCCGC 290
|||||||| || || ||| | ||||| ||||||||||||| |||||||||||||||||||
Sbjct 175 AAACATGCGATCCCGGCGTCATTTTACCCGACGAAGAAGAAACAATGGAGTCGTTGCCGC 234
Query 291 GTCTTTTGCTGCTGCGTCTGCATCACCGTCGCCATTGTCATTCTCCTCCTTATCCTCACC 350
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 235 GTCTTTTGCTGCTGCGTCTGCATCACCGTCGCAATTGTCATCCTCCTCCTTATCCTCACC 294
Query 351 GTCTCCGTTTTCTTTCTTTATTACAGCCCGAGACTCCCCGTCGTACGTCTCTCCTCTTTC 410
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 295 GTCTCCGTCTTCTTCCTTTATTACAGCCCGAGACTCCCCGTCGTACGTCTCTCCTCCTTC 354
Query 411 CGCGTCAGCAATTTCAACTTTTCCGGTGGGAAAGCCGGCGACGGTTTATCGCAGTTGACG 470
||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 355 CGCGTCAGCAATTTCAACTTTTCCGGTGGAAAACCCGGCGACGGTTTATCGCACCTGACG 414
Query 471 GCGGAGGCTACAGCGAGGCTTGATTTCAGAAACCCTAACGGGAAGTTACGTTACTATTAC 530
|||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 415 GCGGAGGCGACGGCGAGGCTCGATTTCAGAAACCCTAACGGGAAGTTGCGTTACTATTAC 474
Query 531 GGTAACGTTGACGTGGCGGTGAGTGTAGGAGAAGATGATTTCGAAACGAGTCTCGGGTCA 590
|||||||||||||||||||||||||||||||||| |||||| |||||||| || ||||||
Sbjct 475 GGTAACGTTGACGTGGCGGTGAGTGTAGGAGAAGGTGATTTTGAAACGAGCCTAGGGTCA 534
Query 591 ACGAAAGTCAAAGGATTTGTGGAGAAGCCAGGGAATCGGACGGTTGTGATTGTTCCGATA 650
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 535 ACGAAAGTCAAAGGATTTGTGCAGAAGCCAGGGAATCGGACGGTTGTGATTATTCCGATA 594
Query 651 AAAGTGAAGAAGCAACAGGTGGATGATCCGACGGTTAAGAGGCTAAGAGCGGACATGAAG 710
||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 595 AAAGTAAAGAAACAACAGGTGGATGATCCGACGGTTAAGAGGCTTAGAGCGGAGATGAAG 654
Query 711 AGTAAAAAGTTGGTGGTGAAAGTGATGGCTAAAACGAAGGTAGGATTGGGTGTGGGAAGG 770
||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct 655 AGTAAAAAGTTGGTGGTGAAAGTGACGGCTAAGACGAAGGTGGGATTGGGTGTGGGAAGG 714
Query 771 CGTAAGATTGTTACGGTGGGGGTTACTATCAGTTGCGGTGGCGTGAGATTACAAACGCTT 830
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 715 CGTAAGATTGTTACGGTGGGGGTTACTATCAGTTGCGGTGGCGTGACATTACAAACGCTT 774
Query 831 GATTCAAAGATGAGTAAATGCACCATCAAAATGCTTAAATGGATTAAATTGCACTCATAA 890
||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 775 GATTCGAAGATGACTAAATGCACCATTAAAATGCTTAAATGGATTAAATTGCACTCATAA 834
Query 891 GTTATGATGATTGATTGATGTGTCTTTAtttttttGGTCGGGATTCAAAACGTTTAAAGA 950
|| |||||||||||||||||||||||| || | |||||||||||||||| |
Sbjct 835 GTAATGATGATTGATTGATGTGTCTTT-TTC----G-TCGGGATTCAAAACGT-----G- 882
Query 951 TGTGGCAAGAGTTCAGCTTTACGAAAGATCACTGTGTATGTATGTATTATTTGTGTTTTT 1010
| | || |||| ||||||||||| ||||||||||||||||| | | || |||||
Sbjct 883 -GCGA-AA-AGTTGAGCTTTACGAATGATCACTGTGTATGTAT-T-T-----GTATTTTT 932
Query 1011 CTTCTCCCTTCTTGTTTTCACTTTTCA 1037
||| |||||||||||||||||||||||
Sbjct 933 CTTTTCCCTTCTTGTTTTCACTTTTCA 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5