BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01130.1
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895902 jgi|Araly1|895902|Al_scaffold_0006_3898 1777 0.0
> Ahg895902 jgi|Araly1|895902|Al_scaffold_0006_3898
Length=1149
Score = 1777 bits (962), Expect = 0.0
Identities = 1087/1149 (95%), Gaps = 2/1149 (0%)
Strand=Plus/Plus
Query 36 ATGGCTTCCGATATAAACAGAAGAAGATCGTTCTCTCTTCTAGTCTTGATTATTGTGATG 95
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCCGATCTAAACAGAAGAAGATCGTTCTCTCTTCTAGTCTTGATTATTGTGATG 60
Query 96 CTTTATGGGCATAAAGGTGATTCAAAATGTGATTTCGAAGCAATTTTCAACTTCGGAGAC 155
||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTATGTGCACAAAGCTGATTCAAAATGTGATTTCGAAGCAATTTTCAACTTCGGAGAC 120
Query 156 TCGAATTCGGACACTGGCGGATTTTGGGCTGCTTTTCCTGCCCAATCTGGTCCATGGGGA 215
|||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 121 TCGAATTCCGACACTGGCGGATTTTGGGCTGCTTTTCCGGCTCAATCCGGTCCATGGGGA 180
Query 216 ATGACTTATTTCAAGAAACCAGCCGGTCGTGCTTCAGACGGTCGTCTTATCATTGATTTT 275
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ATGACTTATTTCAAGAAACCGGCCGGTCGTGCTTCAGACGGTCGTCTCATCATTGATTTT 240
Query 276 CTAGCCAAATCTCTTGGAATGCCTTTCCTAAGCCCATATTTGCAATCTATTGGATCGGAT 335
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCGCTAAATCTCTTGGAATGCCTTTCCTAAGCCCATATTTGCAATCTATTGGATCGGAT 300
Query 336 TTTCGACATGGCGCAAACTTTGCGACGTTAGCGTCCACGGTTCTCTTGCCAAACACGTCT 395
|| || |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 301 TTCCGGCATGGCGCAAACTTTGCGACGTTAGCATCCACAGTTCTTTTGCCAAACACGTCT 360
Query 396 TTATTTGTCTCCGGAATCAGCCCTTTCTCACTCGCTATTCAGCTGAATCAGATGAAACAA 455
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTATTTGTCTCTGGAATAAGCCCTTTCTCACTCGCTATTCAGCTGAATCAGATGAAACAA 420
Query 456 TTCAAGGTTAATGTCGACGAGTCACATTCTTTGGACCGACCAGGATTGAAGATCTTACCG 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCAAGGTTAATGTCGACGAGTCACATTCTTTGGACCGACCAGGATTGAAGATCTTACCG 480
Query 516 TCTAAAATTGTTTTCGGAAAATCGCTATACACGTTTTATATTGGTCAAAACGATTTCACA 575
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 TCTAAAAATGTTTTCGGAAAATCGCTATACACGTTTTATATTGGCCAAAACGATTTCACA 540
Query 576 TCCAATTTAGCCAGTATTGGAGTTGAGAGAGTGAAACTATATCTTCCACAAGTCATAGGC 635
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TCCAATTTAGCGAGTATTGGAGTTGAGAGAGTGAAACAATATCTTCCACAAGTCATAGGC 600
Query 636 CAAATTGCTGGAACGATTAAGGAGATATATGGAATAGGTGGTCGGACATTTTTGGTATTG 695
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 601 CAAATTGCTGGAACGATTAAGGAGATATATGGGATAGGTGGTCAGACATTTTTGGTATTA 660
Query 696 AATTTAGCACCGGTTGGATGTTACCCGGCGATTTTAACCGGTTACACTCATACCGATGCT 755
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 661 AATTTAGCACCAGTTGGATGTTACCCGGCGATTTTAACCGGTTACACTCATACCGTTTCG 720
Query 756 GATTTAGACAAGTATGGATGTCTCATTCCTGTAAACAAAGCAGTCAAATATTACAACACG 815
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 721 GATTTAGACAAATTTGGATGTCTCATTCCTGTAAACAAAGCCGTCAAATATTACAACGCG 780
Query 816 TTATTGAATAAGACATTATCTC-AGACCAGAACCGAACTAAAAAACGCTACCGTAATTTA 874
||| |||| || || ||||| | | |||||||||||||||| ||||||||||||||||||
Sbjct 781 TTACTGAAAAAAACGTTATC-CGAAACCAGAACCGAACTAAGAAACGCTACCGTAATTTA 839
Query 875 TTTAGACACGCACAAGATATTGCTTGATCTCTTTCAACACCCCAAATCCTACGGTATGAA 934
|||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 840 CTTAGACACTCACAAGATATTGCTCGACCTCTTTCAACACCCCAATTCCTACGGTATGAA 899
Query 935 ACACGGTATTAAAGCTTGTTGTGGATATGGTGGACGTCCATACAATTTCAATCAGAAGTT 994
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 900 ACACGGTATTAAAGCTTGTTGTGGATACGGTGGACGTCCATACAATTTCGATCAGAAGTT 959
Query 995 ATTTTGTGGCAACACCAAAGTGATTGGAAATTTTTCTACGACGGCCAAAGCTTGCCATGA 1054
||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |||
Sbjct 960 ATTTTGTGGTAACACCAAAGTGATTGAAAATTTTTCTGCGACGGCCAAAGCTTGCCGTGA 1019
Query 1055 TCCTCACAACTACGTGAGTTGGGATGGAATTCATGCGACGGAGGCCGCAAATCACCACAT 1114
||| ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1020 TCCACACAATTACGTGAGCTGGGATGGAATTCATGCAACGGAGGCCGCAAACCACCACAT 1079
Query 1115 TTCCATGGCCATTCTCGACGGTTCGATATCATATCCTCCGTTCATACTCAATAACCTATG 1174
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 TTCCACGGCCATTCTCGACGGTTCGATATCATATCCTCCGTTCATACTCAAGAACCTATG 1139
Query 1175 TTCGCCTTA 1183
|||||||
Sbjct 1140 CCCGCCTTA 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44184460803
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5