BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01140.1 Length=1451 Score E Sequences producing significant alignments: (Bits) Value Ahg490456 jgi|Araly1|490456|fgenesh2_kg.6__3590__AT4G01140.1 1557 0.0 > Ahg490456 jgi|Araly1|490456|fgenesh2_kg.6__3590__AT4G01140.1 Length=1178 Score = 1557 bits (843), Expect = 0.0 Identities = 967/1025 (94%), Gaps = 16/1025 (2%) Strand=Plus/Plus Query 204 ATGAAGATCACCAAAACTCATTTTGGTCTTCTTCATCATCGTCGTTCTTGATTTTCTCTT 263 ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 162 ATGAAGATCACCAAAACTCATTTGGGTCTTC-T--TCATCGTCGTTCTTGATTTTCTCTT 218 Query 264 GGCAATGGGATCTACAAAGCTTGGTCTCATCATCATCGTCTTCGTCTTCTGCATCATCTC 323 |||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| Sbjct 219 GGCAATGGGATCTACAAATCTTGGTCTCATCATCATCGTCTTCGTCTTTTGCGTCATCTC 278 Query 324 TAATCTACAAACGATGGTTCATTGCATCAACAACATTTC-AGATTTGGACGATCTGATCC 382 |||||||||| |||||||||||||||||||||| | ||| |||||||||||||||||||| Sbjct 279 TAATCTACAATCGATGGTTCATTGCATCAACAATA-TTCAAGATTTGGACGATCTGATCC 337 Query 383 GTTCATACGCGGCTCGTGCGACTACAAGAAGACACACAGGCTCGTTGTACGATGTTTCAC 442 ||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |||||| Sbjct 338 GTTCATACGCGGCTCATGCCACTACTAGAAGACACACAGGCTCGTTGTACGAAATTTCAC 397 Query 443 TTCCGTCAAATCTTTCCGACATCAAAGCATCGGTTGTTACGGTCCGTAACAGTATATTCT 502 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 398 TTCCGTCGAATCTTTCCGACATCAAAGCATCGGTTGTTACGGTCCGTAACAGTATGTTCT 457 Query 503 GGAGAAAAGGAACAAACTTTAGTGGTGTTTTGATTCCTCCGATGGTTAAAACGTCGCCGT 562 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 458 GGAGAAAAGGAACAAACTTTAGTGGTGTTTTGATTCCTCCGATGGTTAAAACAACGCCGT 517 Query 563 ACGCTAAAAGAATAGCTTTTGTCTTTGAGAGTTTCGGTGATAACTCTTCATCGGTTTACT 622 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 518 ACGCTAAAAGAATAGCTTTTGTCTATGAGAGTTTCGGTGATCACTCTTCATCGGTTTACT 577 Query 623 TCCGGTTAGCTGATAATTACTCATTT-GTTTCTCCGGTTATTGGATTCACCGGTTATGAC 681 |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| ||| Sbjct 578 TCCGGTTAGCTGATAATTACTC-TTTCGTTTCTCCGGTTATTGGATTTACCGGTTACGAC 636 Query 682 GCGACCAACACGAATGATCTCAAAAAATTGAACCTTTCGATCAAGAGAGACAAGCCAATC 741 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 637 GCGACCAACATGAATGATCTCAAAAAATTGAATCTTTCGATCAAGAGAGACAAGCCAATC 696 Query 742 TTGATCAAATTCGATCCTCACGCTTCTCGTGATCGCTCAA-AAGTCAAATGCATCGTCTT 800 |||||||||||||||||| ||||||||||| ||||||||| || |||||||||||||||| Sbjct 697 TTGATCAAATTCGATCCTTACGCTTCTCGTAATCGCTCAAGAA-TCAAATGCATCGTCTT 755 Query 801 TGGAGATAATGGTTTGTTGTTGAACATCAGCAATACGATACGGAATTACGAGTGTGCCAC 860 ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 756 TGGAGATAACGGTTTGTTGTTGAATATCAGCAATACGATACGGAATTACGAATGTGCCAC 815 Query 861 TACGAATTCTCATGGGCATTACGCACTTGTTGTCCTAAACCAGGAGAAAGTCAAACCGAA 920 |||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| | Sbjct 816 TACGCATTCTCATGGGCATTACGCACTTGTTGTCCTAAACCAGCAGAAACCCAAACCGGA 875 Query 921 ACACGAACCGGTGTTGGTTCGGAGGAATTGGTGGTGGATTGTTTTAACCGGGATTGGAGT 980 ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 876 ACAGGAACCGGAGTTGGTTCGGAGAAATTGGTGGTGGATTGTTTTAACCGGGATTGGAGT 935 Query 981 TTCGGTTATTGTAGTTGTGGTGATCATTGTT-TCGGTG-AAGTTAGTGAGGAAAAAGAGG 1038 |||||||||||| ||| |||||||||||||| | |||| ||| |||||| ||| |||||| Sbjct 936 TTCGGTTATTGTTGTTATGGTGATCATTGTTGT-GGTGAAAG-TAGTGAAGAAGAAGAGG 993 Query 1039 TTAAGAGATATGGAAAGAGAGTCGGAGAAGAGTGAAACGATCGGAAATGTTTGGATTGGT 1098 |||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 994 TTAAGAGATATGGAGAGAGAGTCGGAGAAGAATGAAACGATCGGAGATGTTTGGATTGGT 1053 Query 1099 CGGAGTAGAATGCCGGCGGCGACGATGGTTAGAACTCAGCCATGTTTGGAATATCATGAA 1158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1054 CGGAGTAGAATGCCGGCGGCGACGATGGTTAGAACTCAGCCATGTTTGGAATATCATGAA 1113 Query 1159 GATCTTCCTTCATCTTCGAATATACCATGATTTTTT--ACTTTT-GTAGTTTCTGGCTCT 1215 |||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| Sbjct 1114 GATCTTCCTTCATCTTCGAATATACCTTGATTTTTTTTACTTTTTGTAGTTTCTGGCTCT 1173 Query 1216 GTGTA 1220 ||||| Sbjct 1174 GTGTA 1178 Score = 237 bits (128), Expect = 2e-61 Identities = 157/169 (93%), Gaps = 9/169 (5%) Strand=Plus/Plus Query 1 ATATGTCCTCTTACTTCCTTTTGAGTGTGTATA--TG-TGCTTAATTATATTCCCTCATC 57 ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 1 ATATGTCCTCTTACTTCCTTTTGAGTGTGTATATGTGCTGCTTAATTATATTCCCTCATC 60 Query 58 ACAACCTCAATCTCAATCTCAATCATGTCTCCAAATCTCAATCATGCTTCTTCCACTTTG 117 |||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 61 ACAA---C---CTCAATCTCAATCATGTTTCCAAATCTCAATCATGCTTCTTCCACTTTG 114 Query 118 ATTCTTATCTATCTGGATCACAATTCTATTCATATCCTTTAATCAAAAT 166 |||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 115 ATTCTTATCTATCTGGATCACAATTCTATTCACAGCCTTTAATCAAAAT 163 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54278599125 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5