BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01140.1
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490456 jgi|Araly1|490456|fgenesh2_kg.6__3590__AT4G01140.1 1557 0.0
> Ahg490456 jgi|Araly1|490456|fgenesh2_kg.6__3590__AT4G01140.1
Length=1178
Score = 1557 bits (843), Expect = 0.0
Identities = 967/1025 (94%), Gaps = 16/1025 (2%)
Strand=Plus/Plus
Query 204 ATGAAGATCACCAAAACTCATTTTGGTCTTCTTCATCATCGTCGTTCTTGATTTTCTCTT 263
||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 162 ATGAAGATCACCAAAACTCATTTGGGTCTTC-T--TCATCGTCGTTCTTGATTTTCTCTT 218
Query 264 GGCAATGGGATCTACAAAGCTTGGTCTCATCATCATCGTCTTCGTCTTCTGCATCATCTC 323
|||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||
Sbjct 219 GGCAATGGGATCTACAAATCTTGGTCTCATCATCATCGTCTTCGTCTTTTGCGTCATCTC 278
Query 324 TAATCTACAAACGATGGTTCATTGCATCAACAACATTTC-AGATTTGGACGATCTGATCC 382
|||||||||| |||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 279 TAATCTACAATCGATGGTTCATTGCATCAACAATA-TTCAAGATTTGGACGATCTGATCC 337
Query 383 GTTCATACGCGGCTCGTGCGACTACAAGAAGACACACAGGCTCGTTGTACGATGTTTCAC 442
||||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 338 GTTCATACGCGGCTCATGCCACTACTAGAAGACACACAGGCTCGTTGTACGAAATTTCAC 397
Query 443 TTCCGTCAAATCTTTCCGACATCAAAGCATCGGTTGTTACGGTCCGTAACAGTATATTCT 502
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 398 TTCCGTCGAATCTTTCCGACATCAAAGCATCGGTTGTTACGGTCCGTAACAGTATGTTCT 457
Query 503 GGAGAAAAGGAACAAACTTTAGTGGTGTTTTGATTCCTCCGATGGTTAAAACGTCGCCGT 562
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 458 GGAGAAAAGGAACAAACTTTAGTGGTGTTTTGATTCCTCCGATGGTTAAAACAACGCCGT 517
Query 563 ACGCTAAAAGAATAGCTTTTGTCTTTGAGAGTTTCGGTGATAACTCTTCATCGGTTTACT 622
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 518 ACGCTAAAAGAATAGCTTTTGTCTATGAGAGTTTCGGTGATCACTCTTCATCGGTTTACT 577
Query 623 TCCGGTTAGCTGATAATTACTCATTT-GTTTCTCCGGTTATTGGATTCACCGGTTATGAC 681
|||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||
Sbjct 578 TCCGGTTAGCTGATAATTACTC-TTTCGTTTCTCCGGTTATTGGATTTACCGGTTACGAC 636
Query 682 GCGACCAACACGAATGATCTCAAAAAATTGAACCTTTCGATCAAGAGAGACAAGCCAATC 741
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 637 GCGACCAACATGAATGATCTCAAAAAATTGAATCTTTCGATCAAGAGAGACAAGCCAATC 696
Query 742 TTGATCAAATTCGATCCTCACGCTTCTCGTGATCGCTCAA-AAGTCAAATGCATCGTCTT 800
|||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||
Sbjct 697 TTGATCAAATTCGATCCTTACGCTTCTCGTAATCGCTCAAGAA-TCAAATGCATCGTCTT 755
Query 801 TGGAGATAATGGTTTGTTGTTGAACATCAGCAATACGATACGGAATTACGAGTGTGCCAC 860
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 756 TGGAGATAACGGTTTGTTGTTGAATATCAGCAATACGATACGGAATTACGAATGTGCCAC 815
Query 861 TACGAATTCTCATGGGCATTACGCACTTGTTGTCCTAAACCAGGAGAAAGTCAAACCGAA 920
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 816 TACGCATTCTCATGGGCATTACGCACTTGTTGTCCTAAACCAGCAGAAACCCAAACCGGA 875
Query 921 ACACGAACCGGTGTTGGTTCGGAGGAATTGGTGGTGGATTGTTTTAACCGGGATTGGAGT 980
||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 876 ACAGGAACCGGAGTTGGTTCGGAGAAATTGGTGGTGGATTGTTTTAACCGGGATTGGAGT 935
Query 981 TTCGGTTATTGTAGTTGTGGTGATCATTGTT-TCGGTG-AAGTTAGTGAGGAAAAAGAGG 1038
|||||||||||| ||| |||||||||||||| | |||| ||| |||||| ||| ||||||
Sbjct 936 TTCGGTTATTGTTGTTATGGTGATCATTGTTGT-GGTGAAAG-TAGTGAAGAAGAAGAGG 993
Query 1039 TTAAGAGATATGGAAAGAGAGTCGGAGAAGAGTGAAACGATCGGAAATGTTTGGATTGGT 1098
|||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 994 TTAAGAGATATGGAGAGAGAGTCGGAGAAGAATGAAACGATCGGAGATGTTTGGATTGGT 1053
Query 1099 CGGAGTAGAATGCCGGCGGCGACGATGGTTAGAACTCAGCCATGTTTGGAATATCATGAA 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 CGGAGTAGAATGCCGGCGGCGACGATGGTTAGAACTCAGCCATGTTTGGAATATCATGAA 1113
Query 1159 GATCTTCCTTCATCTTCGAATATACCATGATTTTTT--ACTTTT-GTAGTTTCTGGCTCT 1215
|||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||
Sbjct 1114 GATCTTCCTTCATCTTCGAATATACCTTGATTTTTTTTACTTTTTGTAGTTTCTGGCTCT 1173
Query 1216 GTGTA 1220
|||||
Sbjct 1174 GTGTA 1178
Score = 237 bits (128), Expect = 2e-61
Identities = 157/169 (93%), Gaps = 9/169 (5%)
Strand=Plus/Plus
Query 1 ATATGTCCTCTTACTTCCTTTTGAGTGTGTATA--TG-TGCTTAATTATATTCCCTCATC 57
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1 ATATGTCCTCTTACTTCCTTTTGAGTGTGTATATGTGCTGCTTAATTATATTCCCTCATC 60
Query 58 ACAACCTCAATCTCAATCTCAATCATGTCTCCAAATCTCAATCATGCTTCTTCCACTTTG 117
|||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 ACAA---C---CTCAATCTCAATCATGTTTCCAAATCTCAATCATGCTTCTTCCACTTTG 114
Query 118 ATTCTTATCTATCTGGATCACAATTCTATTCATATCCTTTAATCAAAAT 166
|||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 115 ATTCTTATCTATCTGGATCACAATTCTATTCACAGCCTTTAATCAAAAT 163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54278599125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5