BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01160.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490453 jgi|Araly1|490453|fgenesh2_kg.6__3587__AT4G01160.1 2124 0.0
> Ahg490453 jgi|Araly1|490453|fgenesh2_kg.6__3587__AT4G01160.1
Length=1515
Score = 2124 bits (1150), Expect = 0.0
Identities = 1406/1528 (92%), Gaps = 23/1528 (2%)
Strand=Plus/Plus
Query 1 ATGGATCTCTCACTCTCCGGTGGTGATTTTAGGTTTGCTTTCAACAACGTTAATTTTTCT 60
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1 ATGGATCTCTCGCTCTCCGGTGGGGATTTTAGGTTTGCTTTCAACAATGTTAAATTTTCC 60
Query 61 GATCGTCTTCTTCGGATCGAGATCACCCAAAGCAGCGGTG-AGG-G-TGAGGTTATCTGT 117
|||||||||||||||||||||||||||| |||||||||| || | |||||||| ||||
Sbjct 61 GATCGTCTTCTTCGGATCGAGATCACCCGTAGCAGCGGTGCCGGTGATGAGGTTAGCTGT 120
Query 118 TCTAGTATCGTCGATTGGGCTAGAGATCGCAAACGCAGAAGAGAAGATATAGTTAATGAG 177
|||||| |||||||||||||||| ||||||||||||||||||| || | || ||| ||
Sbjct 121 TCTAGTGTCGTCGATTGGGCTAGGGATCGCAAACGCAGAAGAG-AG-GA-AGATAA-CAG 176
Query 178 -AACAGC-AACAACAAAACACAAGTATTGGTAACTGCGGCTGAACAAGAACCAAAATCAG 235
|||| | || |||| | | ||| |||||||| | |||||||||||||||||||||||
Sbjct 177 CAACAACAAAAAACATGA-AGAAGCATTGGTAA-T--GGCTGAACAAGAACCAAAATCAG 232
Query 236 GTGGTGAAG---ATGAGAATGAGAGGCTCACTAATAATAATACTTCAGTTCTAAGTGTTC 292
||||||||| |||||| ||||||| |||| |||||||||||||||||||| |||
Sbjct 233 GTGGTGAAGATCATGAGATTGAGAGGGTCAC---TAATAATACTTCAGTTCTAAAAGTTA 289
Query 293 AAGAGTTACATATAAGCTCTGCAATTTTGGCAGCCAAAAGTCCATTTTTCTACAAGCTAT 352
|||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 290 AAGAATTACATATAAGCTCTGCAATTTTGGCAGCCAAAAGTCAATTTTTCTTCAAGCTAT 349
Query 353 TCTCTAATGGAATGCTTGAGTCGGAGCAAAAACAAATGACCTTGAAAATAGATGCCTCTG 412
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||
Sbjct 350 TCTCTAATGGAATGCTTGAGTCAGAGCAAAAACAATTGACATTGAAAATAGATGCTTCTG 409
Query 413 AGGAAACTGCTGTAATGGAGCTCTTGAAATTCATGTATAGCAATTCACTATCAGTCACTG 472
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 410 AGGAAGCTGCTGTAATGGAGCTCTTGAACTTCATGTATAGCAATTCACTATCAGTCACGG 469
Query 473 CGTCCTCTGCTTTACTCGATGTGTTAATGGTGGCCGACAAGTTTGAGGTTGCTTCATGTA 532
|| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 470 CGCCCTCTGCTTTACTCGATGTGCTAATGGCGGCCGACAAGTTTGAGGTTGCTTCGTGTA 529
Query 533 TGAAGTATTGCAGCCAATTGTTGCTCAAAATGCCTATGACATTAGAATCTTCATTGCTTC 592
|||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||
Sbjct 530 TGAATTATTGCAGCCAATTGTTGCTCAAAATGCCCATGACATTAGATTCTGCATTGCTTC 589
Query 593 TTCTTGATCTTCCTTCAAGTTTGCTAATGGCTGATTCAGTGAAGCCTTTAACCAATGCTG 652
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 590 TTCTTGATCTTCCTTCGAGTTTGCTAATGGCTGATTCAGTTAAGCCTTTAACCAATGCTG 649
Query 653 CAAGGCAATTCATAGCCTCTCGTTACAAGAATATGTCCAAGATTACAATGGAGGAGTTGA 712
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CAAGGCAGTTCATCGCCTCTCGTTACAAGAATATGTCCAAGATTACAATGGAGGAGTTGA 709
Query 713 TGGCTTTACCGTTAGTAGGTATCGAGGCGATACTAGCGAGTGACGGTCTAGAGATCCAAT 772
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 710 TGGCTTTACCGTTAGTAGGTATCGAGGCGATGCTAGCGAGTGACGGTCTAGAGATCCAAT 769
Query 773 CTGAAGACGTTGTATATGAAGTTGTCTTGAAATGGGTCAAGTCACATTACTCAGTTCTAG 832
|||||||| || |||| |||||||||||||||||||| || ||| ||||||||||| | |
Sbjct 770 CTGAAGACATTCTATACGAAGTTGTCTTGAAATGGGTAAAATCAAATTACTCAGTTGTCG 829
Query 833 AAGCACGCCAAGAAGTACTAGGCTCTCATCTCGCTCGCTATATACGTTTCCCTCACATGA 892
||| |||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 830 AAGAACGCCAAGAAATACTAGGCTCTCACCTCGCTCGCTACATCCGTTTCCCTCACATGA 889
Query 893 CAACTGACAGACTCAAGAAAATATTGACCTCAAACGACTTTAGACCTTCTGTGGCATCAA 952
||| || |||||||||| | || ||| ||||||||||||| | |||||||||||||||||
Sbjct 890 CAATTGGCAGACTCAAGCATATCTTGTCCTCAAACGACTTCACACCTTCTGTGGCATCAA 949
Query 953 AACTTGTTGTTGAAGCTCTCTTCTTCAAAACAGAATCGTTGGCTCACCAACACGTTCTAC 1012
|||| || |||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 950 AACTAGTCATTGAAGCTCTCTTCTTCAAAACAGAATCGTTGGCCCACCAACGCTTTCTAC 1009
Query 1013 TAGCCCATGAACAACCTGCCTCAACCAGCCGCCGGTTTGCTAAACGAGCCTATGTACACA 1072
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1010 TAGCCCATGAACAACCCGCCTCAACCAGCCGCTGGTTTGCTAAACGAGCCTATGTACAAA 1069
Query 1073 GACCCATCAAAATTGTGGAATTTGCGGTTCCTCGGCCCCAATGCATCATATATTTGGACT 1132
||||||| |||||||| || || |||| ||||||||||||||||||||| ||||||||||
Sbjct 1070 GACCCATAAAAATTGTAGAGTTCGCGGCTCCTCGGCCCCAATGCATCATTTATTTGGACT 1129
Query 1133 TAAAACGCAAAGAATGTGAAAGCATCTATCCATCAAGCAGGATATCATCTCAACAGTTTA 1192
||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1130 TAAAACGGAAAGAATGTGAAAGCATCTATCCAGCAAGCAGGATATCATCTCAACCGTTTA 1189
Query 1193 CCTTAGGAGGACAAGGGTTCTTTCTTTCAGCTCAATGCAACATGGACCATCTTTGTTTAA 1252
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||
Sbjct 1190 CCTTAGGAGGACAAGGGTTCTTTCTCTCAGCTCAATGCAACATGGACCATCTATGTATAA 1249
Query 1253 TCCATTGTTTCGGATTGTTTATTGGGATGCAAGAAAACGGGTCAGCGAGTGCGAGC-GTG 1311
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1250 TCCACTGTTTTGGATTGTTTATTGGGATGCAAGAAAACGGGTCAGCGAGTGCGA-CTGTG 1308
Query 1312 ACTGTGGACTACGATTTTTCAGTGAGGTCGAAGCCAACGATGGAATTTGTGGGAAAATTC 1371
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1309 ACTGTGGACTACGAATTTTCAGTAAGGTCAAAGCCAACGATGGAATTTGTGGGAAAATTC 1368
Query 1372 AAAGGAATCTATACGTTCA-CTAGAGGTAAAGCTGTTGGATGCAGAAACTTGTTAGGTAT 1430
||||||| ||||||||||| | |||||||||||||||||||||||||||||| ||| |||
Sbjct 1369 AAAGGAAACTATACGTTCAGC-AGAGGTAAAGCTGTTGGATGCAGAAACTTGCTAGCTAT 1427
Query 1431 ACCATGGGATATTTTCACAGCCAAGAATTGTCCCTACTTCATCAATGATGTTCTTCATCT 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 ACCATGGGATATTTTCACAGCCAAGAATTGTCCCTACTTCATCAATGATGTTCTTCATCT 1487
Query 1491 CCGGGCTGATCTCTCCATCCGCCTTTAG 1518
|||||| |||||||||||||||||||||
Sbjct 1488 CCGGGCCGATCTCTCCATCCGCCTTTAG 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5