BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01190.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895898 jgi|Araly1|895898|Al_scaffold_0006_3894 1751 0.0
> Ahg895898 jgi|Araly1|895898|Al_scaffold_0006_3894
Length=1212
Score = 1751 bits (948), Expect = 0.0
Identities = 1126/1210 (93%), Gaps = 20/1210 (2%)
Strand=Plus/Plus
Query 1 ATGGAGCTGAGAGCCACGGTGGAGAATCGAATTCGATACTCTACAAAACACATTAAACAC 60
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGCTGAGAGCCACGGTGGAAAACCGAATTCGATACTCTACAAAACACATTAAACAC 60
Query 61 TTGCCACCTGGCTCAATCACTGAGTTTGATTGGAAGGATTACTGTCCCGTT-GGTTTCGG 119
|||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 61 TTGCCACCTGGCACAATCACTGAGTTTGATTGGAAGGATTACTGT-CCATTGGGTTTCGG 119
Query 120 ACTTATTCAAGAACTTGAGGGTATAGATCATGATGATTACTTGCTATCCATTTGCACTGA 179
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 120 ACTTATACAAGAACTTGAGGGTATTGATCATGATGATTACTTGCTTTCCATTTGCACTGA 179
Query 180 TGAGACTCTCAAGAAGATTTCTTCTGGGAAAATTGGAAATGTCTTTCATATTTCCAATGA 239
||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TGAGACTATTAAGAAGCTTTCTTCTGGGAAAATTGGAAACGTCTTTCATATTTCCAATGA 239
Query 240 TAACCGTTTTCTCATCAAGATTCTTCGAAAATCCGAAATTAAGGTGACACTAGAGATGCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TAACCGTTTTCTCATCAAGATTCTTCGAAAATCCGAAATTAAGGTGACACTAGAGATGCT 299
Query 300 TCCACGTTACTACAGACATATTAATTATCACAGATCATCACTATTCACAAGGATTTTTGG 359
||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||
Sbjct 300 TCCCCGTTACTACCGACATATTAACTATCACAGATCATCACTATTCTCAAGGATTTATGG 359
Query 360 TGCTCATTCTGTGAAGCCTCTTGGAGGTGTTAAGACATATTTTGCTGTGATGTCAAACAT 419
|| ||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 360 TGTTCACGCTGTGAAGCCTGTTGGAGGTGTTAAGACATATTTTGCTGTCATGTCAAACAT 419
Query 420 GCTACATTCAACGATCTTTGTGAACAAGCTCTATGATCTTAAAGGTTCTCCGAAAGGTCG 479
||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCTACATCCAACGGTCTTTATGAACAAGCTCTATGATCTTAAAGGTTCTCCGAAAGGTCG 479
Query 480 ATCTAACAAGAAAATTGAAGTGAGAAACACCACTGTTTTGAAGGACATCGATTTCGATTT 539
||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct 480 ATCTAACAAGAAAATTGAAGTCAGAAACACCACTGTTTTAAAGGACATCGATCTCGATTT 539
Query 540 CTGTTTCTACGTTGATCCTTTGGCGAGACAACGCATCATCAAGCAAACAAAGCTAGATTG 599
|| ||||||||||||||| || || ||||||||||||||||||||||||||| |||||||
Sbjct 540 CTCTTTCTACGTTGATCCATTAGCCAGACAACGCATCATCAAGCAAACAAAGATAGATTG 599
Query 600 CGAGCTTTTGGAAGAAGAAGGTATAATGGATTATAGCTTATTGGTTGGTTTACAATCTAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGAGCTTTTGGAAGAAGAAGGTATAATGGATTATAGCTTATTGGTTGGTTTACAATCTAA 659
Query 660 AGGCTCATGTCAAGGTTCACTTGATGGATTGAACCCGGTTTACGGTAGCTTCGCACCTCC 719
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 AGGCTCATGTCAAGGTTCACTTGATGGATTGAACCCGGTTTACGGTAGCTGCGCACCTCC 719
Query 720 AAGCTCGTTCAAAAGCAATAGCACAAAGTCGATGAAGACGGCTTCTAGTTCTCCTGATAG 779
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATGCTCGTTCAAAAGCGCTAGCACAAAGTCGATGAAGACGGCTTCTAGTTCTCCTGATAG 779
Query 780 ATCTTCTGTAGCAATGTATTCATGCTCTCCCGATAGAGAT-TCAGTCGAAAACGAAATGT 838
||||||| || ||||||||||||||||||||||||||||| | ||| ||| ||||| ||
Sbjct 780 ATCTTCTCTAACAATGTATTCATGCTCTCCCGATAGAGATAT-AGTAGAATGCGAAAAGT 838
Query 839 CAATGACTATACAATCAGTGACAAGCAATAGC---G---CAAGCTCAGA-AA-CAAATAT 890
|||||||||||||||||||||||||||||||| | |||| ||||| || |||| |
Sbjct 839 CAATGACTATACAATCAGTGACAAGCAATAGCTCAGAAACAAG-TCAGATAAACAAAAAA 897
Query 891 A---T--TAGCCA-CAACACTCAGTGACCTCTTTCACAATAGCTCAAATATCAATTTTGG 944
| | |||| | ||||| |||||||| | |||||||||||||||||||||| ||||||
Sbjct 898 AGCATAGTAGC-AGCAACAATCAGTGACTTGTTTCACAATAGCTCAAATATCAGTTTTGG 956
Query 945 GATGAAGATTCCAGCGAGGGCACGGCGAGTGACGAGAGAAACCGGAGAAGAAGAATGGTA 1004
|||||||||||| || | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 957 GATGAAGATTCCGGCCAAAGCACGGCGAGTGACGAGAGAGACCGGAGAAGAAGAATGGTA 1016
Query 1005 CAATGTTGTTTTGTATATAGGGATAGTAGACACATTTCAAGACTATGGTATGAAGAAACG 1064
| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1017 CGATGTCGTTTTGTATATAGGGATCGTAGACACATTTCAAGACTATGGTATGAAGAAACG 1076
Query 1065 CATAGAACATTGTTACAAATCCATTCAATATAACTCAAACTCAATCTCAACCGTCCATCC 1124
|||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 1077 CATAGAACATTGTTACAAATCCATCCAACATAACTCAAACTCAATCTCGACCGTCCATCC 1136
Query 1125 TAAGATCTACTCTTCTAGATTCCAAGACTTTGTCTCCAACATCTTCCTACCTCACGACGA 1184
||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||
Sbjct 1137 TAAGATCTACTCTTCTAGATTTCAAGACTTTGTCTCCAACATCTTCTTATCTCACGATGA 1196
Query 1185 TGATCTCTCT 1194
|||||||||
Sbjct 1197 CGATCTCTCT 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5