BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01200.1
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943626 jgi|Araly1|943626|scaffold_604170.1 1288 0.0
> Ahg943626 jgi|Araly1|943626|scaffold_604170.1
Length=811
Score = 1288 bits (697), Expect = 0.0
Identities = 776/812 (96%), Gaps = 13/812 (2%)
Strand=Plus/Plus
Query 74 AACAAAGAAAGAGAGAAGATGGAGGAGACGCAAGTTCTTGAGATCAATCTCATCTCTGCG 133
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3 AACGAAGAAAGAGAGAAGATGGAGGAGACGCACGTTCTTGAGATCAATCTCATCTCTGCG 62
Query 134 CAAGGACTTAAAGAACCGACGGGAAAGCTCCGGCGATTGCAGACTTACGCATCCGTCTGG 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CAAGGACTTAAAGAACCGACGGGAAAGCTCCGGCGATTGCAGACTTACGCATCCGTCTGG 122
Query 194 GTTGATTCTTCCAGCAAACTCCGGACTCGAATTGATCGGATCGGCTCTGAGAATCCGATC 253
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GTTGATTCTTCCAACAAACTCCGGACTCGAATTGATCGGATCGGCTCTGAGAATCCGATC 182
Query 254 TGGAACGACAAATTCGTTTTCCAGGTATCGCCGGAGTTTCTATCTAGCGAAACTTCTGGT 313
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 183 TGGAACGACAAATTCGTTTTCCAGGTCTCGCCGGAGTTTCTATCTAGCGAAACTTCTGGC 242
Query 314 GTTTCAATCGAGATCTACGCCGTTGGTTACTTGCGAGATCATCTGATCGGAACTGTTCGC 373
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 243 GTTTCAATCGAGATCTATGCCGTTGGTTACTTGCGAGATCATCAGATCGGAACTGTTCGC 302
Query 374 TTCCTCGTGAGTAACTTCCTCCCAACCGCCGCCGTGAAAGTTCCATCTCTCGTCGCGCTT 433
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 303 TTCCTCGTGAGTAACTTCCTCCCAACCGCCGCCGTGAAAGTTCCGTCTCTCGTCGCACTT 362
Query 434 CAGATCCGTCGTCCTTCTGGAAAGTTTCACGGCGTTCTTAACATCGCGGCTATGGTGATG 493
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 363 CAGATCCGTCGTCCTTCTGGAAAGTTCCACGGCGTTCTTAACATCGCGGCTATGGTGATG 422
Query 494 GATGCTTCTGAACTTCCAGCTGATTTCTTCAAGTCGGTTCAAGAGATCCGTCGGAGTCGG 553
||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||
Sbjct 423 GATGCTTCTGAACTTCCGGCTGATTTCTTCAAGTCCGTTCAAGAGAGCCGTCGGAGTCG- 481
Query 554 AA-AATGAGAAAGTCTAGATCTGCGGTTAGTTCGTCGGAGAACGGTTCCGCTGACGACGG 612
|| ||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 482 AAGAATGAGAAAATCGAGATCTGCGGTTAGTTCGTCGGAGAACGGTTTCGCTGATGACGG 541
Query 613 TGAGAGTTCGAAAGAGAATTCGGTTTGCGGAT-CGGTTAATTTCTCCGACGACGGTACTG 671
|||||||||||||||||||||||||| | || ||||||||| ||||||||||||||| |
Sbjct 542 CGAGAGTTCGAAAGAGAATTCGGTTTGTG-ATTCGGTTAATTACTCCGACGACGGTACGG 600
Query 672 ACTCGACGGCGTCTTCTCCGATGCCGTCTCCTCTCAGAGACTGGAACGCTGTTCGAAATT 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACTCGACGGCGTCTTCTCCGATGCCGTCTCCTCTCAGAGACTGGAACGCTGTTCGAAATT 660
Query 732 TGGCGGGAAAGAATCACGTGCGATCGTCATCGGACGGCGGAGGATTGATGTGCTGTTTCT 791
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGGCGGGAAAGAATCACGTGAGATCGTCATCGGACGGCGGAGGATTGATGTGCTGTTTCT 720
Query 792 TGATGAAATCGTCGGGCATGTTACCACC----AAGAAGAAAAATGACGGACGGCTGAGAT 847
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 TGATGAAATCGTCGGGCATGTTACCACCCCTCAAGAAGAAAAATGACGGACGGCTGAGAT 780
Query 848 CTGTTGTCT--T-GAATTTCCAACGGTT-CAG 875
||||| ||| | || |||||||||||| |||
Sbjct 781 CTGTTATCTGATTGA-TTTCCAACGGTTTCAG 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41592102447
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5