BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01220.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943624 jgi|Araly1|943624|scaffold_604168.1 1653 0.0
Ahg490401 jgi|Araly1|490401|fgenesh2_kg.6__3535__AT4G01750.1 926 0.0
Ahg352664 jgi|Araly1|352664|fgenesh1_pg.C_scaffold_6003257 732 0.0
> Ahg943624 jgi|Araly1|943624|scaffold_604168.1
Length=1111
Score = 1653 bits (895), Expect = 0.0
Identities = 1041/1110 (94%), Gaps = 16/1110 (1%)
Strand=Plus/Plus
Query 199 aaaaaaaaTGGCGCAGCAAAAGTTCCTTCACCAGCGACCAATCCAAAACCCATTCACAAA 258
|||||||||||||||||||||||| ||||||||||| ||| | || || |||
Sbjct 14 AAAAAAAATGGCGCAGCAAAAGTTTCTTCACCAGCG-----TCC---A---ATCCA-AAA 61
Query 259 CCCATTCTCTTCTTCTCCTCTTTCCACTTCTTCAATCTCAAATCGTCCAATCTCTCTACT 318
|||||||||||| ||||||||||| | |||||||||||||||||| ||||| ||||| ||
Sbjct 62 CCCATTCTCTTCCTCTCCTCTTTCTAATTCTTCAATCTCAAATCGACCAATTTCTCTCCT 121
Query 319 CAGCCGCAACGGTCTCCTCCTCCTTCTCGCTCTCCTCGTTATCCTCGGCGTATTCTTACC 378
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 122 CAGCCGCAACGGTCTCCTCCTCCTTCTCGCTCTCCTCGTTATCCTCGGTGTATTCTTACC 181
Query 379 CTGGGCAGGATCTCCTTTATTCCCGTCTCCAAACAAACTCTCTCCTTCTCAATCCAAATG 438
||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 182 CTGGGCAGGATCTCCCTTATTCCCGTTTCCAAACAGACTCTCTTCTTCTCAATCCAAATG 241
Query 439 GCGCGACTATTCCCTCCCTCAAGCTGTCAAATTCGTAGCTAAGAACGGGACTGTGATCGT 498
|||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 242 GCGCGACTATTCCCTCCCTCAAGCCGTCAAGTTCGTCGCTAAGAACGGAACTGTGATCGT 301
Query 499 ATGCGCCGTTAGCTATCCTTACTTGCCGTTTCTCAACAATTGGTTGATTAGTGTTTCTAG 558
|||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 302 CTGCGCCGTGAGCTACCCATACTTGCCTTTTCTCAACAATTGGTTGATTAGTGTTTCTAG 361
Query 559 ACAGAAGCATCAGGATCAAGTTCTCGTCATCGCTGAGGATTACGCTACTCTCTACAAAGT 618
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 362 ACAGAAGCATCAGGATCAAGTTCTCGTTATCGCTGAGGATTACGCTACTCTCTATAAGGT 421
Query 619 TAACGAGAAATGGCCTGGTCACGCCGTTCTCATTCCTCCGGCGCTCGATTCTCAGACCGC 678
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 422 TAACGAGAAATGGCCTGGTCACGCCGTTCTCATTCCTCCGGCGTTAGATTCTCAGACCGC 481
Query 679 TCACAAATTCGGTTCTCAGGGATTCTTCAATTTCACAGCACGGAGGCCGCAACATCTCTT 738
||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 482 TCATAAATTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGGAGGCCGCAACATCTCTT 541
Query 739 GGAAATTTTGGAGTTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTGGTTGCA 798
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 542 GGAAATTTTGGAGTTAGGTTACAATGTTATGTACAACGATGTTGATATGGTCTGGTTGCA 601
Query 799 AGATCCGTTTCAGTATTTAGAGGGAAAGCACGATGCTTACTTCATGGATGATATGACTGC 858
||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 602 AGATCCGTTTCTGTATTTGGAGGGAAAGCACGATGCGTACTTCATGGATGATATGACTGC 661
Query 859 AATTAAGCCTTTGGATCACTCTCATGATTTACCACCTCCGGGTAAAAAAGGAAGGACTTA 918
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 662 GATTAAGCCTTTGGATCACTCTCATGATTTACCACCTCCGGGTAAAAAGGGAAGGACTTA 721
Query 919 TATTTGTAGCTGTATGATTTTCTTGCGTCCCACTAATGGCGCAAAACTTCTCATGAAGAA 978
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 722 TATTTGTAGCTGTATGATTTTCTTGCGTCCCACTGATGGGGCAAAACTTCTCATGAAGAA 781
Query 979 ATGGATCGAGGAGCTTGAAACGCAACCTTGGTCCAGAGCTAAGAAAGCAAATGATCAGCC 1038
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 782 ATGGATTGAGGAGCTTGAAACCCAACCTTGGTCCAGAGCTAAGAAAGCAAATGATCAGCC 841
Query 1039 TGGTTTTAACTGGGCACTTAACAAAACAGCTAATCAGGTGGATATGTACTTGCTTTCGCA 1098
||||||||||||||||||||||||||||||| ||| ||||||| | |||||||| || ||
Sbjct 842 TGGTTTTAACTGGGCACTTAACAAAACAGCTCATCTGGTGGATCTCTACTTGCTATCTCA 901
Query 1099 GGCAGCTTTCCCAACAGGAGGATTGTATTTCAAGAACAAAACATGGGTTAAAGAAACAAA 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GGCAGCTTTCCCAACAGGAGGATTGTATTTCAAGAACAAAACATGGGTTAAAGAAACAAA 961
Query 1159 GGGAAAACATG-CGATAATCCACAATAACTACATAGTCGGTTTTGAGAAGAAGATCAAAC 1217
||||||||||| | || ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 962 GGGAAAACATGTC-ATTATCCACAATAACTACATTGTCGGTTTTGAAAAGAAGATCAAAC 1020
Query 1218 GTTTCCGTGACTTTAATCTATGGCTAGTCGATGATCATGCTTCCGAGTCTCCTTTAGGGA 1277
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1021 GTTTCCGTGACTTTAATCTATGGCTAGTCGATGACCATGCTTCCGAGTCTCCATTAGGGA 1080
Query 1278 AATTAGAGTAAATTCC-AATGGCAGAAAAA 1306
||||||||||||| || ||||||| |||||
Sbjct 1081 AATTAGAGTAAAT-CCGAATGGCAAAAAAA 1109
> Ahg490401 jgi|Araly1|490401|fgenesh2_kg.6__3535__AT4G01750.1
Length=1394
Score = 926 bits (501), Expect = 0.0
Identities = 906/1091 (83%), Gaps = 69/1091 (6%)
Strand=Plus/Plus
Query 260 CCATTCTCTTCTTCTCCTCTTTC-CACTTCTTCAATCTCAAATCGTCCAATCTCTCTACT 318
||||||||||| ||||||| ||| | ||||||||||||||| ||||| |||| ||| ||
Sbjct 97 CCATTCTCTTCCTCTCCTCGTTCTTA-TTCTTCAATCTCAAACCGTCCCATCTTTCTCCT 155
Query 319 CAGCCGCAACGGTCTCCT-C--CTCCTTCTCGCTCTCCTCGTTATCCTCGGCGTATTCTT 375
||||||||||||||||| | ||||||||||||||| || || |||| || ||||||||
Sbjct 156 TAGCCGCAACGGTCTCCTCCTTCTCCTTCTCGCTCTCTTCCTTCTCCTTGGTGTATTCTT 215
Query 376 ACCCTGGGCAGGATCT-C-C--TT--TATT-CC---C---G--TC-TC-CAAAC-AA--- 414
||||||| |||||||| | | || |||| || | | || || | | ||
Sbjct 216 ACCCTGGCCAGGATCTCCTCTGTTGCTATTACCAAACAAAGTCTCTTCTCCTTCTAATGC 275
Query 415 -AC-TCTCT-CCTTCTCAATCC--A----AATGGCGCGACTATTCCCTCCCTCAAGCTGT 465
|| ||| | |||| ||| || | |||||||||||||| ||||| |||| || |
Sbjct 276 TACTTCTTTGTCTTCACAAGCCAAATCTGAATGGCGCGACTATACCCTCGCTCAGGCCG- 334
Query 466 C-AAATTCGTAGCTAAGAACGGGACTGTGATCGTATGCGCCGTTAGCT-ATCC-TTACTT 522
| || ||||| || |||||||| ||||||||||| |||||||| |||| | || || |||
Sbjct 335 CTAAGTTCGTGGCCAAGAACGGCACTGTGATCGTCTGCGCCGTGAGCTCA-CCATT-CTT 392
Query 523 GCCGTTTCTCAACAATTGGTTGATTAGTGTTTCTAGACAGAAGCATCAGGATCAAGTTCT 582
||| ||||| ||||| |||||||||||||||||||||||||||||||| || |||| ||
Sbjct 393 GCCTTTTCTTAACAACTGGTTGATTAGTGTTTCTAGACAGAAGCATCAAGAAAAAGTCCT 452
Query 583 CGTCATCGCTGAGGATTACGCTACTCTCTACAAAGTTAACGAGAAATGGCCTGGTCACGC 642
|| ||||||||||||||| |||||| || ||||| |||||||| |||||||| || ||
Sbjct 453 TGTGATCGCTGAGGATTACATTACTCTGTATAAAGTCAACGAGAAGTGGCCTGGCCATGC 512
Query 643 CGTTCTCATTCCTCCGGCGCTCGATTCTCAG-ACCGC-TCACAAATTCGGTTCTCAGGGA 700
|||||| |||||||| |||||||||||| || ||||| | ||| |||||||| |||||
Sbjct 513 CGTTCTTATTCCTCCTGCGCTCGATTCT-AGAACCGCAT-ACAGTTTCGGTTCCCAGGGT 570
Query 701 TTCTTCAATTTCACAGCACGGAGGCCGCAACATCTCTTGGAAATTTTGGAGTTAGGTTAC 760
||||||||||||||||| || |||||||||||||||||| ||||||||||| ||||||||
Sbjct 571 TTCTTCAATTTCACAGCTCGAAGGCCGCAACATCTCTTGCAAATTTTGGAGCTAGGTTAC 630
Query 761 AATGTTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCGTTTCAGTATTTAGAG 820
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 631 AATGTTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCGTTTCAGTATTTGGAG 690
Query 821 GGAAAGC-ACGATGCTTACTTCATGGATGATATGACTGCAA-TTAAGCCTTTGGATCACT 878
|||| || |||| || ||||||| |||||||||| || ||| ||||||||||| ||||||
Sbjct 691 GGAA-GCCACGACGCGTACTTCACGGATGATATGCCT-CAAATTAAGCCTTTGAATCACT 748
Query 879 CTCATGATTTACCACCTCCGGGTAAAAAAGGA-AGGACTTATATTTGTAGCTGTATGATT 937
|||||||||||||| ||||| | |||| ||| || |||||||| |||||||| ||||||
Sbjct 749 CTCATGATTTACCAGATCCGGATCAAAACGGAGAG-ACTTATATATGTAGCTGCATGATT 807
Query 938 TTCTTGCGTCCCACTAATGGCGCAAAACTTCTCATGAAGAAATGGA-TCGAGGAGCTTGA 996
| ||||||||||||| |||| ||||| ||||| ||||||||||||| | ||||| ||| |
Sbjct 808 TACTTGCGTCCCACTGATGGTGCAAAGCTTCTAATGAAGAAATGGAGT-GAGGAACTTCA 866
Query 997 AACGCAACCTTGGTCCAGAG-CTAA--G----AAAGCAAATGATCAGCCTGGTTTTAACT 1049
| | ||| ||||||| ||| | | | ||||||||||| ||||||| ||||||||
Sbjct 867 ATCCCAAGCTTGGTCT-GAGTCCATCCGTTTTAAAGCAAATGACCAGCCTGCTTTTAACT 925
Query 1050 GGGCACTTAACAAAACAGCTAATCAGGTGGATATGTACTTGCTTTCGCAGGCAGCTTTCC 1109
||||||||||||||||||| |||| |||||| |||||||||| ||||| | |||||| |
Sbjct 926 TGGCACTTAACAAAACAGCTCATCAAGTGGATCTGTACTTGCTCTCGCAAGTAGCTTTTC 985
Query 1110 CAACAGGAGGATTGTATTTCAAG-AACAAAACATGGGTTAAAGAAACAAAGGGAAAACAT 1168
|||||||||||||||| |||| | ||| | ||||||||||||| |||||||| ||||||
Sbjct 986 CAACAGGAGGATTGTACTTCA-GTAACGAGGCATGGGTTAAAGAGACAAAGGGGAAACAT 1044
Query 1169 G-CGATAATCCACAATAACTACAT-AGTCGGTTTTGAGAAGAAGATCAAACGTTTCCGTG 1226
| | |||||||||||||||||||| | |||||| || || || || | |||||||| |
Sbjct 1045 GTC-ATAATCCACAATAACTACATTA-TCGGTTACGACAACAAAATGAGACGTTTCCAAG 1102
Query 1227 ACTTTAATCTATGGCTAGTCGATGATCATGCT-TCCGAGTCTCCTTTAGGGAAATTAGAG 1285
| | | |||||||||||||||||||||| || || |||||||| |||||||||||| ||
Sbjct 1103 AATATGGTCTATGGCTAGTCGATGATCATACTCTC-GAGTCTCCATTAGGGAAATTACAG 1161
Query 1286 TAAATTCCAAT 1296
|||||||||||
Sbjct 1162 TAAATTCCAAT 1172
> Ahg352664 jgi|Araly1|352664|fgenesh1_pg.C_scaffold_6003257
Length=915
Score = 732 bits (396), Expect = 0.0
Identities = 718/863 (83%), Gaps = 63/863 (7%)
Strand=Plus/Plus
Query 260 CCATTCTCTTCTTCTCCTCTTTC-CACTTCTTCAATCTCAAAT-CGTCCAATCTCTCTAC 317
||||||||||| ||||||| ||| | |||||||||||| | | ||||| |||||| | |
Sbjct 37 CCATTCTCTTCCTCTCCTCGTTCTTA-TTCTTCAATCTC-AGTCCGTCCCATCTCTGTCC 94
Query 318 -TCAGCCGCAACGGTCTCCT-C--CTCCTTCTCGCTCTCCTCGTTATCCTCGGCGTATTC 373
| ||||||||||||||||| | ||||||||||||||| || || ||||||| ||||||
Sbjct 95 GT-AGCCGCAACGGTCTCCTCCTTCTCCTTCTCGCTCTCTTCTTTCTCCTCGGTGTATTC 153
Query 374 TTACCCTGGGCAGGATCTCCTTTATTCCCGTCTCCAAACA-A---AC-TC-TC-TC--C- 423
||||||||| |||||||||| ||||||| || |||||||| | | || || || |
Sbjct 154 TTACCCTGGCCAGGATCTCCCTTATTCCAGTTTCCAAACAGACTTTCTTCTTCTTCTTCT 213
Query 424 T-TC--TCA----------A-TCCAAATGGCGCGACTATTCCCTCCCTCAAGCTGTC-AA 468
| || ||| | |||||||||| ||||||| |||| |||| || | | ||
Sbjct 214 TCTCTGTCACCGTCTCGGCAGTCCAAATGGCACGACTATACCCTTGCTCAGGCCG-CTAA 272
Query 469 ATTCGTAGCTAAGAACGGGACTGTGATCGTATGCGCCGTTAGCT-ATCC-TTACTTGCCG 526
||||| || |||||||| ||||||||||| |||||||| |||| | || || ||||||
Sbjct 273 GTTCGTGGCCAAGAACGGCACTGTGATCGTCTGCGCCGTGAGCTCA-CCATT-CTTGCCT 330
Query 527 TTTCTCAACAATTGGTTGATTAGTGTTTCTAGACAGAAGCATCAGGATCAAGTTCTCGTC 586
||||||||||| |||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 331 TTTCTCAACAACTGGTTGATTAGTGTTTCTAGACAGAAGCATCAAGAAAAAGTCCTCGTG 390
Query 587 ATCGCTGAGGATTACGCTACTCTCTACAAAGTTAACGAGAAATGGCCTGGTCACGCCGTT 646
||||||||||||||||||||||| || |||||||||||||| |||||||| || ||||||
Sbjct 391 ATCGCTGAGGATTACGCTACTCTGTATAAAGTTAACGAGAAGTGGCCTGGCCATGCCGTT 450
Query 647 CTCATTCCTCCGGCGCTCGATTCTC-AGACCGC-TCACAAATTCGGTTCTCAGGGATTCT 704
|| |||||||||||||||||||| | | ||||| | ||| |||||||| ||||| ||||
Sbjct 451 CTTATTCCTCCGGCGCTCGATTC-CAAAACCGCAT-ACAGTTTCGGTTCCCAGGGTTTCT 508
Query 705 TCAATTTCACAGCACGGAGGCCGCAACATCTCTTGGAAATTTTGGAGTTAGGTTACAATG 764
||||||||||||| || |||||||||||||||||| || |||||||| ||||||||||||
Sbjct 509 TCAATTTCACAGCTCGAAGGCCGCAACATCTCTTGCAAGTTTTGGAGCTAGGTTACAATG 568
Query 765 TTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCGTTTCAGTATTTAGAGGGAA 824
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 569 TTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCGTTTCAGTATTTGGAGGGAA 628
Query 825 AGC-ACGATGCT-TACTTCATGGATGA-TATGACTGCAATTAA-GCCTTTGGATCACTCT 880
|| | || | | ||||||| |||||| | || || ||| ||| ||||||| ||||||||
Sbjct 629 -GCCATGACG-TGTACTTCACGGATGACT-TGCCT-CAAATAAAGCCTTTGAATCACTCT 684
Query 881 CATGATTTACCACCTCCGGGTAAAAAAGGA-AGGACTTATATTTGTAGCTGTATGATTTT 939
||||||||||||| ||||||| ||| ||| || || ||||| |||||||| |||||||
Sbjct 685 CATGATTTACCACATCCGGGTCGAAACGGAGAG-ACGTATATATGTAGCTGCATGATTTA 743
Query 940 CTTGCGTCCCACTAATGGCGCAAAACTTCTCATGAAGAAATGGA-TCGAGGAGCTTGAAA 998
|||||| ||||||||||| ||||| ||||| ||||||||||||| | ||||| ||| ||
Sbjct 744 CTTGCGACCCACTAATGGTGCAAAGCTTCTAATGAAGAAATGGAGT-GAGGAACTTCAAT 802
Query 999 CGCAACCTTGGTCCAGAG-CTAA--G----AAAGCAAATGATCAGCCTGGTTTTAACTGG 1051
| ||| ||||||| ||| | | | ||||| ||||||||||||| |||||||| |
Sbjct 803 CCCAAGCTTGGTCT-GAGTCCATCCGTTTTAAAGCCAATGATCAGCCTGCTTTTAACTTG 861
Query 1052 GCACTTAACAAAACAGCTAATCA 1074
|||||||||||||||||| ||||
Sbjct 862 GCACTTAACAAAACAGCTCATCA 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5