BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01230.1 Length=729 Score E Sequences producing significant alignments: (Bits) Value Ahg490448 jgi|Araly1|490448|fgenesh2_kg.6__3582__AT4G01230.1 1074 0.0 Ahg946686 jgi|Araly1|946686|scaffold_702915.1 139 3e-32 > Ahg490448 jgi|Araly1|490448|fgenesh2_kg.6__3582__AT4G01230.1 Length=717 Score = 1074 bits (581), Expect = 0.0 Identities = 673/718 (94%), Gaps = 3/718 (0%) Strand=Plus/Plus Query 1 ATGGAGGAGGAGAAGCTAGAAATCGTCGGGCCTTTGGAGGAGCCGTTGATGGGAAACATC 60 ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1 ATGGAGGAGGAAAAGCTAGAAATCGTCGGACCATTGGAGGAGCCGTTGATGGGAAACATC 60 Query 61 GTACCAGAGGAGATCAATGGCTTGGATTCGCTTACGTCGTCGGATTCTGATAGCGAGAAA 120 ||||||||| ||||||| ||||||||||||||| | || || ||| |||||||||||||| Sbjct 61 GTACCAGAGAAGATCAACGGCTTGGATTCGCTTTCTTCATCAGATACTGATAGCGAGAAA 120 Query 121 CCAGATTCCCCCGTTCCCATAAATGCTCCGATCTACCGGATGTTTGGAAGAGAACGACCA 180 |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCAGATTCTCCCGTTCCGATCAATGCTCCGATCTACCGGATGTTTGGAAGAGAACGACCA 180 Query 181 ATTCACATGGTTCTCGGCGGAGCTGCTGATGTGTTGCTATGGAGAGACAAGAAGGTCACG 240 ||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||| Sbjct 181 ATTCACATGGTTCTCGGCGGAGCTGCTGATGTGATACTGTGGAGAGACAAGAAGATCACC 240 Query 241 TTAGGATTACTCAGTGCAGTGACTGTGATTTGGCTTTTGTTTGGATTTGGTGGTCGTCGT 300 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 241 TTAGGATTACTCAGTGTAGTGACTGTGATTTGGCTTTTGTTTGGATTTTGTGGTTGTCGT 300 Query 301 CTTCTCACATCTC-TTTGTCGTGGATCCATTCTCTTTCTGCTTCTATCATTCCTCTGGTC 359 ||||||||||| | |||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 301 CTTCTCACATC-CATTTGTCGTGGCTCCATCCTCTTTCTGCTTCTATCATTCCTCTGGTC 359 Query 360 CAATGCCCTCAACAAATCTCCAGAGAACATGATGGATATTTACATACCTGAGAAGCCATT 419 |||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct 360 CAATGCCCTCAACAAATCTCCAGAGAACATAATGGAGATTTATATCCCTGAGAAGCCATT 419 Query 420 ACTCCAAGCTGCTTCTGCGATGACATTTGAGCTTAATTGTGCTTTTGCAACCTTAAGGAG 479 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 420 ACTCCAAGCTGCTTCTGCGATGACCTTTGAGCTTAACTGTGCTTTTGCAACCTTAAGGAG 479 Query 480 CATTGCTTTAGAAAGAGACATCAAGAACTTTGTAATGGCAGTCATAGGACTTTGGCTAGT 539 |||||||||||| |||||||||||||||||||| |||||| |||| ||||||||||| || Sbjct 480 CATTGCTTTAGAGAGAGACATCAAGAACTTTGTTATGGCACTCATTGGACTTTGGCTTGT 539 Query 540 ATCGGTCATCGGAAACTGGTTCAGCTTCTTGTCATTGCTCTACATTTGTTTTGTACTAAT 599 |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 540 ATCGATCATCGGAAACTGGTTCAGCTTCTTGTCATTGCTCTACATCTGTTTTGTACTGAT 599 Query 600 TCACACGGTGCCAATGCTTTATGAGAAGTATGAAGATGAGATTGATCCAATTGCAGAGAA 659 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 600 TCACACGGTGCCAATGCTTTATGAGAAGTACGAAGATGAGATTGATCCCATTGCAGAGAA 659 Query 660 GGCTGTGATTGAGATGAAGAAACATTACCAAGTTTTTGAAGCTAAG-TTTTTAAGTAA 716 ||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||| Sbjct 660 GGCTGTGATTGAGATGAAGAAGCAATACCAAGTTTTTGAAGCCAAGGTTTTTAAGTAA 717 > Ahg946686 jgi|Araly1|946686|scaffold_702915.1 Length=240 Score = 139 bits (75), Expect = 3e-32 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1 ATGGAGGAGGAGAAGCTAGAAATCGTCGGGCCTTTGGAGGAGCCGTTGATGGGAAACATC 60 ||||||||||| |||||||||||||| || || |||||| |||||||||||||||||||| Sbjct 24 ATGGAGGAGGAAAAGCTAGAAATCGTTGGACCGTTGGAGAAGCCGTTGATGGGAAACATC 83 Query 61 GTACCAGAGGAGATCAATGGCTTGGATTCGCTT 93 ||||||||||||||||| ||||||||||||||| Sbjct 84 GTACCAGAGGAGATCAACGGCTTGGATTCGCTT 116 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26838533568 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5