BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01230.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490448 jgi|Araly1|490448|fgenesh2_kg.6__3582__AT4G01230.1 1074 0.0
Ahg946686 jgi|Araly1|946686|scaffold_702915.1 139 3e-32
> Ahg490448 jgi|Araly1|490448|fgenesh2_kg.6__3582__AT4G01230.1
Length=717
Score = 1074 bits (581), Expect = 0.0
Identities = 673/718 (94%), Gaps = 3/718 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGGAGAAGCTAGAAATCGTCGGGCCTTTGGAGGAGCCGTTGATGGGAAACATC 60
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAGGAAAAGCTAGAAATCGTCGGACCATTGGAGGAGCCGTTGATGGGAAACATC 60
Query 61 GTACCAGAGGAGATCAATGGCTTGGATTCGCTTACGTCGTCGGATTCTGATAGCGAGAAA 120
||||||||| ||||||| ||||||||||||||| | || || ||| ||||||||||||||
Sbjct 61 GTACCAGAGAAGATCAACGGCTTGGATTCGCTTTCTTCATCAGATACTGATAGCGAGAAA 120
Query 121 CCAGATTCCCCCGTTCCCATAAATGCTCCGATCTACCGGATGTTTGGAAGAGAACGACCA 180
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAGATTCTCCCGTTCCGATCAATGCTCCGATCTACCGGATGTTTGGAAGAGAACGACCA 180
Query 181 ATTCACATGGTTCTCGGCGGAGCTGCTGATGTGTTGCTATGGAGAGACAAGAAGGTCACG 240
||||||||||||||||||||||||||||||||| | || ||||||||||||||| ||||
Sbjct 181 ATTCACATGGTTCTCGGCGGAGCTGCTGATGTGATACTGTGGAGAGACAAGAAGATCACC 240
Query 241 TTAGGATTACTCAGTGCAGTGACTGTGATTTGGCTTTTGTTTGGATTTGGTGGTCGTCGT 300
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 241 TTAGGATTACTCAGTGTAGTGACTGTGATTTGGCTTTTGTTTGGATTTTGTGGTTGTCGT 300
Query 301 CTTCTCACATCTC-TTTGTCGTGGATCCATTCTCTTTCTGCTTCTATCATTCCTCTGGTC 359
||||||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 301 CTTCTCACATC-CATTTGTCGTGGCTCCATCCTCTTTCTGCTTCTATCATTCCTCTGGTC 359
Query 360 CAATGCCCTCAACAAATCTCCAGAGAACATGATGGATATTTACATACCTGAGAAGCCATT 419
|||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 360 CAATGCCCTCAACAAATCTCCAGAGAACATAATGGAGATTTATATCCCTGAGAAGCCATT 419
Query 420 ACTCCAAGCTGCTTCTGCGATGACATTTGAGCTTAATTGTGCTTTTGCAACCTTAAGGAG 479
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 420 ACTCCAAGCTGCTTCTGCGATGACCTTTGAGCTTAACTGTGCTTTTGCAACCTTAAGGAG 479
Query 480 CATTGCTTTAGAAAGAGACATCAAGAACTTTGTAATGGCAGTCATAGGACTTTGGCTAGT 539
|||||||||||| |||||||||||||||||||| |||||| |||| ||||||||||| ||
Sbjct 480 CATTGCTTTAGAGAGAGACATCAAGAACTTTGTTATGGCACTCATTGGACTTTGGCTTGT 539
Query 540 ATCGGTCATCGGAAACTGGTTCAGCTTCTTGTCATTGCTCTACATTTGTTTTGTACTAAT 599
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 540 ATCGATCATCGGAAACTGGTTCAGCTTCTTGTCATTGCTCTACATCTGTTTTGTACTGAT 599
Query 600 TCACACGGTGCCAATGCTTTATGAGAAGTATGAAGATGAGATTGATCCAATTGCAGAGAA 659
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 600 TCACACGGTGCCAATGCTTTATGAGAAGTACGAAGATGAGATTGATCCCATTGCAGAGAA 659
Query 660 GGCTGTGATTGAGATGAAGAAACATTACCAAGTTTTTGAAGCTAAG-TTTTTAAGTAA 716
||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||
Sbjct 660 GGCTGTGATTGAGATGAAGAAGCAATACCAAGTTTTTGAAGCCAAGGTTTTTAAGTAA 717
> Ahg946686 jgi|Araly1|946686|scaffold_702915.1
Length=240
Score = 139 bits (75), Expect = 3e-32
Identities = 87/93 (94%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGGAGAAGCTAGAAATCGTCGGGCCTTTGGAGGAGCCGTTGATGGGAAACATC 60
||||||||||| |||||||||||||| || || |||||| ||||||||||||||||||||
Sbjct 24 ATGGAGGAGGAAAAGCTAGAAATCGTTGGACCGTTGGAGAAGCCGTTGATGGGAAACATC 83
Query 61 GTACCAGAGGAGATCAATGGCTTGGATTCGCTT 93
||||||||||||||||| |||||||||||||||
Sbjct 84 GTACCAGAGGAGATCAACGGCTTGGATTCGCTT 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5