BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01240.1
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943622 jgi|Araly1|943622|scaffold_604166.1 2211 0.0
> Ahg943622 jgi|Araly1|943622|scaffold_604166.1
Length=1483
Score = 2211 bits (1197), Expect = 0.0
Identities = 1311/1367 (96%), Gaps = 3/1367 (0%)
Strand=Plus/Plus
Query 617 GTTTGGCTTTTCTTATCTCAGTAGCTACATTAGCTAAGTTCAACTACATCACTCCACTAC 676
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 95 GTTTGGCTTTTCTTATCTCAGTAGCTACATTAGCTAAGTTCAATTACATCACACCACTAC 154
Query 677 GCTTCTCTGATCGGTTCTGTAACTATCATGGAAGCTTTGACGGCGACAACTACAACATCG 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 155 GCTTCTCTGATCGGTTCTGTAACTATCATGGAAGCTTTGACGGCGACAACTACAATATCG 214
Query 737 GAAGCCAAATGAGAAAGACAATCGAAACCGCCATTTTTAAAATCCACCAAGAAATGGATG 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GAAGCCAAATGAGAAAGACAATCGAAACCGCCATTTTTAAAATCCACCAAGAAATGGATG 274
Query 797 ATCTCAAGGCTTTAGAAGCTAA---TTCTTCTACTCCTCCATCCTCTGTTTCATCAGCTT 853
||||||||||||||||||| || ||||||| || ||||||| |||| |||||||||||
Sbjct 275 ATCTCAAGGCTTTAGAAGCCAACTCTTCTTCTTCTTCTCCATCATCTGATTCATCAGCTT 334
Query 854 CAGGATCCATGTTTAGGCATGTAGCTTTTCTTGCGGATGTTCTTTCGCTAGTTCAGTCGG 913
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 335 CTGGATCCATGTTTAGGCATGTAGCTTTTCTAGCGGATGTTCTTTCGCTAGTTCAGTCGG 394
Query 914 TTCATATGGAATTGCCTTCGTTCGAAGAGAGATCCGTAGCAGATCATCCGTTGAAGCAGC 973
||||||||||||||||||| || |||||||||| ||||| |||||||||||||||||||
Sbjct 395 TTCATATGGAATTGCCTTCTTTTGAAGAGAGATTTGTAGCGGATCATCCGTTGAAGCAGC 454
Query 974 AGAAAGGTGACCCTGGTGAGCATTTTATGAGAGAAGAGATAAAGAAGTACATAAAGATCA 1033
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 AGAACGGTGACCCGGGGGAGCATTTTATGAGAGAAGAGATAAAGAAGTACATAAAGATCA 514
Query 1034 AACCTAACCGGCTCGGGAAGCAGAATTTCATGGGAGCTAACGGAACATTCACCTCGATCG 1093
|||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 515 AACCAAACCGGCTTGGGAAGCAGAACTTCATGGGAGCTAACGGAACTTTCACCTCGATCG 574
Query 1094 GGCACGCTTGTTTTGCGATGAAGAAAGATCTAGAAGAGTATATGGACTATGATGTTGGAG 1153
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 575 GGCATGCTTGTTTTGCGATGAAGGAAGATCTAGAAGAGTATATGGACTATGATGTTGGGG 634
Query 1154 AAATCTGCAATGATGATTGGAGATTAGCTCAGAAGCTTATGGTTCATGGATGCGATCCGT 1213
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 635 AAATCTGCAACGATGATTGGAGGTTAGCTCAGAAGCTTATGGTTCACGGATGCGATCCGT 694
Query 1214 TGCCTAGAAGACGGTGCTTCTCCCGTGGCCCGCAGTTATACCACAAACCGTTTCCAATCA 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 TGCCTAGAAGACGGTGCTTCTCCCGTGGCCCGCAGTTATACCACAAACCGTTTCCAATCA 754
Query 1274 ACGAGTCTTTATGGAAGCTTCCGGATAATCGGAATGTGAGATGGGGACAGTATAAGTGCA 1333
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 755 ACGAGTCTTTATGGAAGCTTCCGGATAATCGGAATGTAAGATGGGGACAGTATAAGTGCA 814
Query 1334 AGAACTTTGCTTGCCTAGCAAGCAACACAACAGCACGAAAAGGGTTCTTTAAATGCACTG 1393
||||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 815 AGAACTTCGCTTGCTTAGCTAGCAACACAATAGCACGAAAAGGGTTCTTTAAATGCACTG 874
Query 1394 ATTGCTTCAACCTCACGCACCACGAATCTCCGAGATGGCTTAACCGAGGCGAAATCGATC 1453
||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||
Sbjct 875 ATTGCTTCAACCTCACGTACCACGAATCGCCGAGATGGCTTAACCGAGGCGAAGTTGATC 934
Query 1454 CTGAGACGAACCAAACTGCGGATTTCTCGATAGCTGAAGTACTCGAGATTAAACCGGGAG 1513
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 935 TTGAGACGAACCAAACTGCGGATTTCTCGATAGCTGAAGTACTAGAGATTAAACCGGGAG 994
Query 1514 AGATTAGAATCGGACTGGATTTCAGCATTGGCACTGGAACTTTCGCAGCAAGAATGAGAG 1573
|||||||||||||| ||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 995 AGATTAGAATCGGATTGGATTTCAGCATTGGCACAGGAACTTTCGCAGCGAGGATGAGAG 1054
Query 1574 AACAGAACGTCACGATTGTATCAGCAACAATCAACCTTGGCGCTCCATTCAACGAGATGA 1633
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1055 AACAGAACGTCACGATTGTATCAGCAACAATCAACCTCGGCGCTCCATTCAACGAGATGA 1114
Query 1634 TCGCTCTGCGCGGTTTAGTCCCGTTGTACTTAACCGTGAACCAACGGTTACCGTTCTTCG 1693
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1115 TCGCACTGCGCGGTTTAGTCCCGTTGTACTTAACTGTGAACCAACGGTTACCGTTCTTCG 1174
Query 1694 ACAGCACGCTTGATATGATTCACACGACGAGGTTTCTCGATGGATGGATTGATCTAATAC 1753
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 ACAGCACTCTTGATATGATTCACACGACGAGGTTTCTCGATGGATGGATTGATCTAATAC 1234
Query 1754 TTCTTGATTTCGTGCTGTTTGATTGGGACAGGGTTTTAAGGCCAGGTGGATTGTTGTGGA 1813
|||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 1235 TTCTTGATTTCGTGCTGTATGACTGGGACAGGGTTTTAAGACCAGGGGGATTGTTGTGGA 1294
Query 1814 TCGATGGTTTCTTTTGTCTGAAAGAAGATGTGAGTGATTACATGGAAGCGTTTAAAGCGT 1873
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1295 TCGATGGTTTCTTCTGTCTGAAAGAAGATTTGAGTGATTACATGGAAGCGTTTAAAGCGT 1354
Query 1874 TGAGGTATAGGAAACATAAGTGGGTTGTGGTACCTAAGAAAGATAAAGATGATAAAGAAG 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 TGAGGTATAGGAAACATAAGTGGGTTGTGGTACCTAAGAAAGATAAAGATGATAAAGAAG 1414
Query 1934 TTTTCTTCTCTGCTGTGTTAGAGAAACCTCCAAGACCCTTTAGATGA 1980
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 TTTTCTTCTCTGCTGTGTTAGAGAAACCTCCAAGACCCTTTAGATGA 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74428338730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5