BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01250.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490447 jgi|Araly1|490447|fgenesh2_kg.6__3581__AT4G01250.1 1788 0.0
> Ahg490447 jgi|Araly1|490447|fgenesh2_kg.6__3581__AT4G01250.1
Length=1173
Score = 1788 bits (968), Expect = 0.0
Identities = 1114/1181 (94%), Gaps = 23/1181 (2%)
Strand=Plus/Plus
Query 1 TCAGCGctctcttttgtctcctctgcttttttctcttctctcctcAGAGATTCGAAGC-T 59
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1 TCAGCGCTCTCTTTTGTCTCCTCTGC--TTTTCTCTTCTCTCCTCAGAGATTCGAAGCTT 58
Query 60 TTTTGTCTCCCCTGAGTAACCAAATTCAATGGCCGACGATTGGGATCTCCACGCCGTAGT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTTTGTCTCCCCTGAGTAACCAAATTCAATGGCCGACGATTGGGATCTCCACGCCGTAGT 118
Query 120 CAGAGGCTGCTCAGCCGTAAGCTCATCAGCTACT---------ACCACCGTATATTCCCC 170
|||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 119 CAGAGGCTGCTCAGCCGTTAGCTCATCAGCTACTACCACCACAACCACCGTATATTCCGG 178
Query 171 CGGCGTTTCATCTCACACAAACCCTATATTCACCGTCGGACGACAAAGTAATGCCGTCTC 230
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 179 CGGCGTTTCATCTCACACAAAACCTATATTCACCGTCGGACGACAAAGTAATGCCGTCTC 238
Query 231 CTTCGGAGAGATTCGAGATCTCTACACACCGTTCACACAAGAATCTGTCG-TCTCTTCGT 289
|||||||||| ||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 239 CTTCGGAGAGTTTCGAGATCTCTACACACCGTTCACACAAGAATCTGT-GATCTCCTCGT 297
Query 290 TTTCTTGTATAAACTACCCAGAAGAACCTAGAAAGCCACAGAACCAGAAACGTCCTCTTT 349
| |||||| |||| |||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 298 TCTCTTGTCTAAATTACCCAGAAGAACCTAAAAAGCCACAGAACCAGAAACGCCCTCTTT 357
Query 350 CTCTCTCTGCTTCTTCCGGTAGCGTCACTAGCAAACCCAGTGGCTCCAATACCTCTAGAT 409
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 358 CTCTCTCTGCTTCTTCCGGTAGCGTCACTAGCAAACCCACTGGCTCCAATACCTCTAGAT 417
Query 410 CTAAAAGAAGAAAGATACAGCATAAGAAAGTGTGCCATGTAGCAGCAGAAGCTTTAAACT 469
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 418 CTAAACGAAGAAAGATACAGCATAAGAAAGTGTGCCATGTAGCAGCAGAGGCTTTAAACT 477
Query 470 CCGATGTCTGGGCATGGCGAAAGTACGGACAGAAACCCATCAAAGGTTCACCATATCCAA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CCGATGTCTGGGCATGGCGAAAGTACGGACAGAAACCCATCAAAGGTTCACCATATCCAA 537
Query 530 GAGGATACTACAGATGTAGTACATCAAAAGGTTGTTTAGCCCGTAAACAAGTGGAGCGAA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAGGATACTACAGATGTAGTACATCAAAAGGTTGTTTAGCCCGTAAACAAGTGGAGCGAA 597
Query 590 ATAGATCCGACCCGAAGATGTTTATCGTCACTTACACGGCGGAGCATAATCATCCAGCTC 649
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 598 ACAGATCCGACCCGAAGATGTTCATCGTCACTTACACGGCGGAGCACAATCATCCAGCTC 657
Query 650 CGACACACCGTAATTCTCTCGCCGGAAGCACACGTCAGAAACCATCCGATCAACAGACGA 709
||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |||||
Sbjct 658 CGACACACCGTAATTCTCTCGCCGGAAGCACCCGTCAGAAAACATCAGATCAACCGACGA 717
Query 710 GTAAATCTCCGACGACCACTATTGCTACTTATTCATCGTCTCCGGTGACTTCAGCCGACG 769
|||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||
Sbjct 718 CTAAATCTCCGACGACCACGATTGGTACTTATTCATCGTCTCCGGTGACGTCAGCCGACG 777
Query 770 AATTTGTTTTGCCTGTTGAGGATCATCTAGCGGTGGGAGATCTTGACGGAGAAGAAGATC 829
||||| |||||||||| ||||||| | |||||||||||||||||||||||| |||||||
Sbjct 778 AATTTATTTTGCCTGTGGAGGATC-T--AGCGGTGGGAGATCTTGACGGAGACGAAGATC 834
Query 830 TGTTATCTTTGTCGGATACGGTGGTTAGCGATGATTTCTTCGATGGGTTAGAGGAATTCG 889
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 835 TGTTATCTTTGTCGGATACGGTGGTGAGCGATGATTTCTTCGATGGATTAGAGGAATTCG 894
Query 890 CAGCCGGAGATAGCTTTTCCGGGAACTCGGCTCCGGCGAGTTTTGATCTCTCTTGGGTTG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CAGCCGGAGATAGCTTTTCCGGGAACTCGGCTCCGGCGAGTTTTGATCTCTCTTGGGTTG 954
Query 950 TGAACAGTGCCGCCACTACCACCGGAGGAATATGATTAGATTACGACGGCTT-AGAATAC 1008
|||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 955 TGAACAGTTCCGGCACGACCACCGGAGGAATATGATTAGATTACGACGGCTTTAGAATAC 1014
Query 1009 TC-TTATTAGGACAGATTTATAGGATTAAGGAATTATTCTCGGAGCATATGTAAAAATAG 1067
|| || |||||| |||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1015 TCCTT-TTAGGAAAGATATATAGGATCAAGGAATTATTCTCGGATTATATGTAAAAATAG 1073
Query 1068 GATAAAAGAAAATGTTCTTTGTTACttttttt--CGGGTTTTCTTCCTATTGTTTCTAAA 1125
|| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1074 GAAAAAAGAAAATGTTCTTTGTTACTTTTTTTTTCGGCTTTTCTTCCTATTGTTTCTAAA 1133
Query 1126 CATCTTAGAAAAAATTTAATTGTATATTCCTTAAGCTCGAT 1166
|||||||| ||| |||||||||||||| ||||||| ||||
Sbjct 1134 TATCTTAGACAAA-TTTAATTGTATATTTCTTAAGCCCGAT 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5