BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01270.1 Length=1614 Score E Sequences producing significant alignments: (Bits) Value Ahg490446 jgi|Araly1|490446|fgenesh2_kg.6__3580__AT4G01270.1 2128 0.0 > Ahg490446 jgi|Araly1|490446|fgenesh2_kg.6__3580__AT4G01270.1 Length=1518 Score = 2128 bits (1152), Expect = 0.0 Identities = 1414/1536 (92%), Gaps = 36/1536 (2%) Strand=Plus/Plus Query 1 ATGGCCGAAGAAAACGCGGCGGGGAATGCAATTTGTTCAATCTGCTACGAAGATCTTAAA 60 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 7 ATGGCAGAAGAAAACGCGGCGGGGAATGCTATTTGTTCAATCTGCTACGAAGATCTCAAA 66 Query 61 CCGGTGGTTGAGAATCTGCAATCAATCTCCGCTTGTGGCCATGTCTTTCACGAACTTTGT 120 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 67 CCGGTTGTTGAGAATCTGCAATCAATCTCCGCTTGTGGCCACGTCTTTCACGAACTTTGT 126 Query 121 TTGCAGCAATGGTTTGAGTATTGCCCGAGTACGAACAAGCGAAATTGTCCGATTTGTAAG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TTGCAGCAATGGTTTGAGTATTGCCCGAGTACGAACAAGCGAAATTGTCCGATTTGTAAG 186 Query 181 CAGAAGTGCTCTCTAAAGGATCCTTGTCGACTTTACTTTCAGTCTTCTGGGAATCAAACC 240 |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| || Sbjct 187 CAGAAGTGCTCTCTAAAGGATCCTTGCCGACTTTACTTCCAGTCTTCCGGGAATC-AA-- 243 Query 241 GATTCGATTGCCTCGGATAAGGTTGTTGGAATCGAAGAAGATCCGGTTTTGTTGAGAGGA 300 | || |||||||| || || |||| ||||||||||||||||||||| ||||||||| Sbjct 244 -A-TC----GCCTCGGAAAAAGTCGTTGAAATCGAAGAAGATCCGGTTTTATTGAGAGGA 297 Query 301 GAAGTGAAGCGGCTTGAAGGGAAGGTACAGAATCTTACTTCGGCTCTGGAGGCGAAGAAA 360 |||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||| Sbjct 298 GAAGTGAAGCGGCTCCAAGGGAAGATACAAAATCTTACTTCGGCTTTGGAGGCGAAGAAA 357 Query 361 AAGGAGAATGTTGAAGTCTCTGATAAGTTGCATCAATGCAATGAGCAATTGAAGGAGGAT 420 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 358 AAGGAGAATGTTCAAGTCTCTGATAAGTTGCATCAATGCAATGAACAATTGAAGGAGGAT 417 Query 421 AAAGTGAAAAGGTGGGAGGCTCTTCAAGAAATATCAACGACTCAGCATTTGCTTAAGTTA 480 ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 418 AAAGTAAAAAGGTGGGAGGCTCTGCAAGAAATATCAACGACTCAGCACTTGCTTAAGTTA 477 Query 481 AAATCTGAGGAATGTATCCAGCTTAACTCACAGTGTGTTAAGCTACAGGAGAGAACTGTG 540 ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| || Sbjct 478 AAATCTGAGGAATGTTTCCAGCTTAGTTCACAGTGTGCTAAGCTACAGGAGAGAACTATG 537 Query 541 GCTCTTGCCAAGGAGCTCGCATCGCTTAAATTGGTTTCTGATTTAAGCTTGGAGGAAGAT 600 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 538 GCTCTTGCCAAGGAGCTCGCAGCGCTTAAATTGGTTTCTGATTTAAGCCTGGAGGAAGAT 597 Query 601 GATGTACTGAAGTTGGCCTTGTTGGGGAATAACGCGAAGACGAAAGATACAATAGACACA 660 ||||| |||||| | |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 598 GATGTTCTGAAGCTAGCCTTGTTGGGGAATAACGCTAAGACGAAAGATACAATAGACACA 657 Query 661 CTAGTCAAGTCCTTGGTTATTCGGAATAGGAGTTATAAGGAATTGCTAGCCAAGTGCAAT 720 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 658 CTAGTCAAGTCCTTGGTTATCCGAAATAGGAGTTATAAGGAATTGCTAGCCAAGTGCAAT 717 Query 721 CAGCTGGGAAGAGGCGAAGC-ACGATCTTCTGAGAAACTTGAAAAAGCTTTGGAAAAGAT 779 |||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 718 CAGCTGGGCAGAGGCGAAGCGA-GATCTTCTGAGAAACTTGAAAAAGCTTTGGAAAAGAT 776 Query 780 AGAAAAACTAAAGAAACGAATGAGGGAACTTGAGTTGATAACTGAAGAGAGAGAGAACAG 839 ||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| || Sbjct 777 AGATAAACTAAAGAAGCGAATGAAGGAACTTGAGTTGATAACTGAAGCGAGAGAGAATAG 836 Query 840 AGCTCTACGGGACATAAACGTTTCAAAGAAATGCAGTTACACAGAAGTT-TCCGAGCCTG 898 || ||||||||||||||||||||||||||| |||||||||| |||| || |||||||||| Sbjct 837 AGTTCTACGGGACATAAACGTTTCAAAGAATTGCAGTTACAGAGAA-TTATCCGAGCCTG 895 Query 899 CAATCGAGAGCATGTCTTCTTTCAGAATGCTTTC-ATCAGACAACAAAGTGGAGAAAATC 957 ||| | |||||||| |||||||||||||| |||| ||||||||||||| ||||||||||| Sbjct 896 CAACCAAGAGCATGGCTTCTTTCAGAATG-TTTCCATCAGACAACAAAATGGAGAAAATC 954 Query 958 TCCACACCACCTGGTAAATTAGAAGAAAAGGATGGCTTTACCATTCAAGGATCATGCTTA 1017 ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 955 TCCACACCACCTGGTAAATTAGAAGAAAATGATGGCTTTACCAACCAAGGATCATGCTTA 1014 Query 1018 AGGGGAAGAGAAGACTCCTTCGTTAGCAGAACAGACTCGGTTATAGATGTAGATGATGAT 1077 ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1015 AGGGGAAGAGAAGGCTCCTTTGTTAGCAGAACAGACTCAGTTATAGATGTAGATGATGAT 1074 Query 1078 TATGTTCCTGAAACCAACACTTCTGGCATTAGAGATT-GGAATACTAATATTGAAGAGAA 1136 ||||| ||||||| || ||||||||| ||| ||| ||| |||||||||||||||||| Sbjct 1075 ---GTTCCCGAAACCACCATTTCTGGCATCAGACATTCGGA-TACTAATATTGAAGAGAA 1130 Query 1137 AGGTGATAATTCCATGGTGAAGGATATAAAGTTCAACATCAGA-AAAGACCCGACATCAT 1195 | |||||||| || |||||||||||||||||||||||||| || ||| |||||||||||| Sbjct 1131 ATGTGATAATCCCCTGGTGAAGGATATAAAGTTCAACATCCGAGAAA-ACCCGACATCAT 1189 Query 1196 CAGTGTCACCTTACAGCAATGGTAG-TGGAAACATTTGGCAGTCAAGTGGAACAAATAGA 1254 |||| |||||| ||||||||| || |||||||||||||||||||| | | || Sbjct 1190 CAGTCTCACCTCGCAGCAATGG-AGCTGGAAACATTTGGCAGTCAAAT----C-----GA 1239 Query 1255 AACCTTGGTAGATGGAGCAAACATGGAGAGAGAAACGAAGCAACTCCATCACTAGGAGGT 1314 ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1240 AACCTTGGTAGGTGGAGCAAACATGGAGAGAGAAACGAAACAACTCCATCACTAGGAGGG 1299 Query 1315 TCTGTTCCAAGAAAAGATGATCTCATCTCTATTGGACCTGATGGTAAAGGTGGTAGAATC 1374 |||| |||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||| Sbjct 1300 TCTGGTCCAAGCAAAGATGATCTGATCGCTATTGGACCTGATGGTAAAGGTGGAAGAATC 1359 Query 1375 AAAGTGCTGAGATCTAAACCCCAAATTTCTAAAACCAATGCAAGCTCAGGAAGT-G-G-T 1431 |||||||||||||||||||||||||||||||| ||||| |||||||||||||| | | | Sbjct 1360 AAAGTGCTGAGATCTAAACCCCAAATTTCTAACGCCAATACAAGCTCAGGAAGTAGTGGT 1419 Query 1432 AAGAGATTCAAGCTTGGAACTAAAACAAGTGGCTCGTCCTCTCAAGGTTGTCTTCAGATA 1491 |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1420 AAGAGATTCAAGCTCGGAACTAAAACAAGTGGCTCGTCCTCTCAAGGTTGTCTGCAGATC 1479 Query 1492 GAACACTATTTCGGAAAAACTAATCGCTAAATTTTC 1527 ||||||||||| || ||||| ||||||||| ||||| Sbjct 1480 GAACACTATTTTGGCAAAACGAATCGCTAATTTTTC 1515 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60487309060 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5