BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01270.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490446 jgi|Araly1|490446|fgenesh2_kg.6__3580__AT4G01270.1 2128 0.0
> Ahg490446 jgi|Araly1|490446|fgenesh2_kg.6__3580__AT4G01270.1
Length=1518
Score = 2128 bits (1152), Expect = 0.0
Identities = 1414/1536 (92%), Gaps = 36/1536 (2%)
Strand=Plus/Plus
Query 1 ATGGCCGAAGAAAACGCGGCGGGGAATGCAATTTGTTCAATCTGCTACGAAGATCTTAAA 60
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 7 ATGGCAGAAGAAAACGCGGCGGGGAATGCTATTTGTTCAATCTGCTACGAAGATCTCAAA 66
Query 61 CCGGTGGTTGAGAATCTGCAATCAATCTCCGCTTGTGGCCATGTCTTTCACGAACTTTGT 120
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 67 CCGGTTGTTGAGAATCTGCAATCAATCTCCGCTTGTGGCCACGTCTTTCACGAACTTTGT 126
Query 121 TTGCAGCAATGGTTTGAGTATTGCCCGAGTACGAACAAGCGAAATTGTCCGATTTGTAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TTGCAGCAATGGTTTGAGTATTGCCCGAGTACGAACAAGCGAAATTGTCCGATTTGTAAG 186
Query 181 CAGAAGTGCTCTCTAAAGGATCCTTGTCGACTTTACTTTCAGTCTTCTGGGAATCAAACC 240
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||
Sbjct 187 CAGAAGTGCTCTCTAAAGGATCCTTGCCGACTTTACTTCCAGTCTTCCGGGAATC-AA-- 243
Query 241 GATTCGATTGCCTCGGATAAGGTTGTTGGAATCGAAGAAGATCCGGTTTTGTTGAGAGGA 300
| || |||||||| || || |||| ||||||||||||||||||||| |||||||||
Sbjct 244 -A-TC----GCCTCGGAAAAAGTCGTTGAAATCGAAGAAGATCCGGTTTTATTGAGAGGA 297
Query 301 GAAGTGAAGCGGCTTGAAGGGAAGGTACAGAATCTTACTTCGGCTCTGGAGGCGAAGAAA 360
|||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct 298 GAAGTGAAGCGGCTCCAAGGGAAGATACAAAATCTTACTTCGGCTTTGGAGGCGAAGAAA 357
Query 361 AAGGAGAATGTTGAAGTCTCTGATAAGTTGCATCAATGCAATGAGCAATTGAAGGAGGAT 420
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 AAGGAGAATGTTCAAGTCTCTGATAAGTTGCATCAATGCAATGAACAATTGAAGGAGGAT 417
Query 421 AAAGTGAAAAGGTGGGAGGCTCTTCAAGAAATATCAACGACTCAGCATTTGCTTAAGTTA 480
||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 418 AAAGTAAAAAGGTGGGAGGCTCTGCAAGAAATATCAACGACTCAGCACTTGCTTAAGTTA 477
Query 481 AAATCTGAGGAATGTATCCAGCTTAACTCACAGTGTGTTAAGCTACAGGAGAGAACTGTG 540
||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||
Sbjct 478 AAATCTGAGGAATGTTTCCAGCTTAGTTCACAGTGTGCTAAGCTACAGGAGAGAACTATG 537
Query 541 GCTCTTGCCAAGGAGCTCGCATCGCTTAAATTGGTTTCTGATTTAAGCTTGGAGGAAGAT 600
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 538 GCTCTTGCCAAGGAGCTCGCAGCGCTTAAATTGGTTTCTGATTTAAGCCTGGAGGAAGAT 597
Query 601 GATGTACTGAAGTTGGCCTTGTTGGGGAATAACGCGAAGACGAAAGATACAATAGACACA 660
||||| |||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 GATGTTCTGAAGCTAGCCTTGTTGGGGAATAACGCTAAGACGAAAGATACAATAGACACA 657
Query 661 CTAGTCAAGTCCTTGGTTATTCGGAATAGGAGTTATAAGGAATTGCTAGCCAAGTGCAAT 720
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 658 CTAGTCAAGTCCTTGGTTATCCGAAATAGGAGTTATAAGGAATTGCTAGCCAAGTGCAAT 717
Query 721 CAGCTGGGAAGAGGCGAAGC-ACGATCTTCTGAGAAACTTGAAAAAGCTTTGGAAAAGAT 779
|||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 718 CAGCTGGGCAGAGGCGAAGCGA-GATCTTCTGAGAAACTTGAAAAAGCTTTGGAAAAGAT 776
Query 780 AGAAAAACTAAAGAAACGAATGAGGGAACTTGAGTTGATAACTGAAGAGAGAGAGAACAG 839
||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 777 AGATAAACTAAAGAAGCGAATGAAGGAACTTGAGTTGATAACTGAAGCGAGAGAGAATAG 836
Query 840 AGCTCTACGGGACATAAACGTTTCAAAGAAATGCAGTTACACAGAAGTT-TCCGAGCCTG 898
|| ||||||||||||||||||||||||||| |||||||||| |||| || ||||||||||
Sbjct 837 AGTTCTACGGGACATAAACGTTTCAAAGAATTGCAGTTACAGAGAA-TTATCCGAGCCTG 895
Query 899 CAATCGAGAGCATGTCTTCTTTCAGAATGCTTTC-ATCAGACAACAAAGTGGAGAAAATC 957
||| | |||||||| |||||||||||||| |||| ||||||||||||| |||||||||||
Sbjct 896 CAACCAAGAGCATGGCTTCTTTCAGAATG-TTTCCATCAGACAACAAAATGGAGAAAATC 954
Query 958 TCCACACCACCTGGTAAATTAGAAGAAAAGGATGGCTTTACCATTCAAGGATCATGCTTA 1017
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 955 TCCACACCACCTGGTAAATTAGAAGAAAATGATGGCTTTACCAACCAAGGATCATGCTTA 1014
Query 1018 AGGGGAAGAGAAGACTCCTTCGTTAGCAGAACAGACTCGGTTATAGATGTAGATGATGAT 1077
||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1015 AGGGGAAGAGAAGGCTCCTTTGTTAGCAGAACAGACTCAGTTATAGATGTAGATGATGAT 1074
Query 1078 TATGTTCCTGAAACCAACACTTCTGGCATTAGAGATT-GGAATACTAATATTGAAGAGAA 1136
||||| ||||||| || ||||||||| ||| ||| ||| ||||||||||||||||||
Sbjct 1075 ---GTTCCCGAAACCACCATTTCTGGCATCAGACATTCGGA-TACTAATATTGAAGAGAA 1130
Query 1137 AGGTGATAATTCCATGGTGAAGGATATAAAGTTCAACATCAGA-AAAGACCCGACATCAT 1195
| |||||||| || |||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 1131 ATGTGATAATCCCCTGGTGAAGGATATAAAGTTCAACATCCGAGAAA-ACCCGACATCAT 1189
Query 1196 CAGTGTCACCTTACAGCAATGGTAG-TGGAAACATTTGGCAGTCAAGTGGAACAAATAGA 1254
|||| |||||| ||||||||| || |||||||||||||||||||| | | ||
Sbjct 1190 CAGTCTCACCTCGCAGCAATGG-AGCTGGAAACATTTGGCAGTCAAAT----C-----GA 1239
Query 1255 AACCTTGGTAGATGGAGCAAACATGGAGAGAGAAACGAAGCAACTCCATCACTAGGAGGT 1314
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1240 AACCTTGGTAGGTGGAGCAAACATGGAGAGAGAAACGAAACAACTCCATCACTAGGAGGG 1299
Query 1315 TCTGTTCCAAGAAAAGATGATCTCATCTCTATTGGACCTGATGGTAAAGGTGGTAGAATC 1374
|||| |||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 1300 TCTGGTCCAAGCAAAGATGATCTGATCGCTATTGGACCTGATGGTAAAGGTGGAAGAATC 1359
Query 1375 AAAGTGCTGAGATCTAAACCCCAAATTTCTAAAACCAATGCAAGCTCAGGAAGT-G-G-T 1431
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| | | |
Sbjct 1360 AAAGTGCTGAGATCTAAACCCCAAATTTCTAACGCCAATACAAGCTCAGGAAGTAGTGGT 1419
Query 1432 AAGAGATTCAAGCTTGGAACTAAAACAAGTGGCTCGTCCTCTCAAGGTTGTCTTCAGATA 1491
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1420 AAGAGATTCAAGCTCGGAACTAAAACAAGTGGCTCGTCCTCTCAAGGTTGTCTGCAGATC 1479
Query 1492 GAACACTATTTCGGAAAAACTAATCGCTAAATTTTC 1527
||||||||||| || ||||| ||||||||| |||||
Sbjct 1480 GAACACTATTTTGGCAAAACGAATCGCTAATTTTTC 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5