BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01280.2
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895890 jgi|Araly1|895890|Al_scaffold_0006_3886 1286 0.0
Ahg311286 jgi|Araly1|311286|fgenesh1_pm.C_scaffold_1000066 252 6e-66
> Ahg895890 jgi|Araly1|895890|Al_scaffold_0006_3886
Length=918
Score = 1286 bits (696), Expect = 0.0
Identities = 859/932 (92%), Gaps = 34/932 (4%)
Strand=Plus/Plus
Query 48 ATGGTGTCCGTAAACCCTAGACCTAAGGGTTTTCCAGTTTTCGATTCC-TCGAATATGAG 106
|||||||||||||||||||||||||||||||||||| | |||||| || | ||| |||||
Sbjct 1 ATGGTGTCCGTAAACCCTAGACCTAAGGGTTTTCCAATGTTCGATCCCGT-GAACATGAG 59
Query 107 TTTACCAAGCTCCGATGGATTTGGTTCGATTCCG---GCCACG-GGACGGACCA--GTAC 160
||||||| ||||||||||||||||||| | |||| || ||| ||| ||| | ||
Sbjct 60 TTTACCAGGCTCCGATGGATTTGGTTCCAATCCGATTGCTACGATTCCGG-CCACCGGAC 118
Query 161 -GGTGTCGTTTTCTGAGGATCCGACGACGAAGATTCGGAAGCCGTACACAATCAAGAAGT 219
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 119 GGGTGTCGTTTTCTGAGGATCCGACTACGAAGATTCGGAAGCCGTACACAATCAAGAAGT 178
Query 220 CGAGAGAGAATTGGACAGATCAAGAGCACGATAAATTTCTAGAAGCTCTTCACTTATTCG 279
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 179 CGAGAGAGAATTGGACAGATCAAGAACACGATAAATTTCTAGAAGCTCTCCACTTATTCG 238
Query 280 ATAGGGATTGGAAGAAAATAGAAGCCTTTGTTGGATCAAAAACAGTAGTTCAGATACGAA 339
|||||||||||||||| ||||| || ||||| |||||||||||||| |||||||||||||
Sbjct 239 ATAGGGATTGGAAGAAGATAGAGGCATTTGTAGGATCAAAAACAGTGGTTCAGATACGAA 298
Query 340 GCCACGCTCAGAAATACTTTCTCAAAGTTCAGAAGAGTGGTGCTAACGAACATCTTCCAC 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCCACGCTCAGAAATACTTTCTCAAAGTTCAGAAGAGTGGTGCTAACGAACATCTTCCAC 358
Query 400 CTCCTCGACCTAAGAGGAAAGCGAGTCATCCTTATCCTATAAAGGCTCCTAAAAATGTTG 459
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTCCTCGACCAAAGAGGAAAGCGAGTCATCCTTATCCTATAAAGGCTCCTAAAAATGTTG 418
Query 460 CTTATACCT----C-T-CTCCCGTCTTCGAGTACATTACCGTTGCTTGAGCCTGGTTATT 513
||| ||||| | | || || |||||||| ||| |||| |||||||||||||||||||
Sbjct 419 CTTTTACCTCCCACGTCCTTCCATCTTCGAGCACACTACCTTTGCTTGAGCCTGGTTATT 478
Query 514 TGTATAGCTCTGATTCGA-AGTCATTGATGGGAAACCAGGCTGTTTGTGCATCTACCTCT 572
|||| ||||||||||| | || | ||| ||||||||||||||||||||||||||| ||||
Sbjct 479 TGTACAGCTCTGATTC-ACAGCCGTTGCTGGGAAACCAGGCTGTTTGTGCATCTAGCTCT 537
Query 573 TCTTCGTGGAATCATGAATCGAC-AA--ATCTGCCAAAACCGGTGATTGAAGTAGAGGAA 629
|||||||||||||||||||| || || |||||||||||||||||||||||| ||||||
Sbjct 538 TCTTCGTGGAATCATGAATCAACGAATCTTCTGCCAAAACCGGTGATTGAAGTTGAGGAA 597
Query 630 CCGGGAGTCTCGGCCACGGCTCCTCTCCCAAATAATCGCTGCAG-ACAGGAAGATACA-G 687
|||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |
Sbjct 598 CCGGGAGTCTCGGCCACGGCTCCTCTCCCAAAGAATCGCTGCAGTA-AGGAAGATACACG 656
Query 688 AGAGGGTACGAGCAGTGACAAAGCCAAATAACGAAGAAAGTTGTGAAAAGCCACATAGAG 747
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 657 -GAGGGTACGAGCAGTGACAAAGCCAAATGACGAAGAAAGTTGCGAAAAGCCACATAGAG 715
Query 748 TGATGCCGAATTTTGCTGAAGTTTACAGCTTCATTGGAAGTGTCTTCGATCCCAACACAT 807
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 716 TGATGCCGAATTTTGCTGAAGTTTACAGCTTCATTGGAAGTGTCTTTGATCCCAACACAT 775
Query 808 CAGGCCACCTCCAGAGATTAAAGCAGATGGATCCAATAAATATGGAAACGGTTCTTTTAC 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CAGGCCACCTCCAGAGATTAAAGCAGATGGATCCAATAAATATGGAAACGGTTCTTTTAC 835
Query 868 TGATGCAAAACCTGTCTGTAAATCTGACAAGTCCCGAGTTTGCAGAGCAAAGGAGGTTGA 927
||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 836 TGATGCAAAACCTGTCTGTAAATCTGACAAGTCCCGAGTTTGCAGAGCA--G-A--T--A 888
Query 928 TATCATCATACAGCGCTAAAGCTTTGAAATAG 959
| |||||||||||||||||||||||||||||
Sbjct 889 T--CATCATACAGCGCTAAAGCTTTGAAATAG 918
> Ahg311286 jgi|Araly1|311286|fgenesh1_pm.C_scaffold_1000066
Length=3747
Score = 252 bits (136), Expect = 6e-66
Identities = 210/246 (85%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 149 ACGGACCAGTACGGTGTCGTTTTCTGAGGATCCGACGACGAAGATTCGGAAGCCGTACAC 208
||||| || |||| ||||||||| ||||||||| || | ||||||| ||||||| |||||
Sbjct 3102 ACGGAGCAATACGATGTCGTTTTTTGAGGATCCAACAAAGAAGATTAGGAAGCCTTACAC 3161
Query 209 AATCAAGAAGTCGAGAGAGAATTGGACAGATCAAGAGCACGATAAATTTCTAGAAGCTCT 268
|||| ||||| |||||||| ||||| || ||||| ||||| || ||||| ||||||||
Sbjct 3162 TATCACCAAGTCTAGAGAGAACTGGACGGAGCAAGAACACGACAAGTTTCTTGAAGCTCT 3221
Query 269 TCACTTATTCGATAGGGATTGGAAGAAAATAGAAGCCTTTGTTGGATCAAAAACAGTAG- 327
||| ||||| || |||||||||||||||| || ||||| ||||||||||||||||| |
Sbjct 3222 TCATTTATTTGACCGGGATTGGAAGAAAATCGAGGCCTTCGTTGGATCAAAAACAGT-GA 3280
Query 328 TTCAGATACGAAGCCACGCTCAGAAATACTTTCTCAAAGTTCAGAAGAGTGGTG-CTAAC 386
| |||||||| |||||||| |||||||||||||||||||||||||||| ||| | ||||
Sbjct 3281 TACAGATACGTAGCCACGCACAGAAATACTTTCTCAAAGTTCAGAAGAATGG-GACTAAA 3339
Query 387 GAACAT 392
||||||
Sbjct 3340 GAACAT 3345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5