BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G01335.1

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947238 jgi|Araly1|947238|scaffold_703467.1                        121    7e-27


> Ahg947238 jgi|Araly1|947238|scaffold_703467.1
Length=661

 Score =  121 bits (65),  Expect = 7e-27
 Identities = 91/103 (88%), Gaps = 4/103 (4%)
 Strand=Plus/Plus

Query  207  TAGTTACATGAAAGACGAGGGATTTGAACGGTTTGGGATTCCATCCAAGAGGGG-AAGAG  265
            |||||||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct  235  TAGTTACCCGAAAGACGAGGAATTTGAACGGTTTGGGATTCCATCCAAGAGGGGGAAGAG  294

Query  266  ACTGGGAAGACAATGATTTATCACTTAACCAACTGTTCATGAA  308
            ||||||||||   ||||||||||||||   |||||| | ||||
Sbjct  295  ACTGGGAAGA---TGATTTATCACTTATTAAACTGTCCTTGAA  334



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21328974251


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5