BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G01340.1

Length=681
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947501 jgi|Araly1|947501|scaffold_703730.1                        185    3e-46
  Ahg943611 jgi|Araly1|943611|scaffold_604155.1                        185    3e-46
  Ahg947238 jgi|Araly1|947238|scaffold_703467.1                        110    2e-23


> Ahg947501 jgi|Araly1|947501|scaffold_703730.1
Length=647

 Score =  185 bits (100),  Expect = 3e-46
 Identities = 122/133 (92%), Gaps = 0/133 (0%)
 Strand=Plus/Plus

Query  448  GAATGTGAAAAGGATCTTTTGTCATATTTGTTGCACGGGAAACACGAGATCTTTGCTGGG  507
            ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| 
Sbjct  445  GAATGTGAAAAGGATCTTTTGCCATATTTATTGCACGGGAAAGACGAGATCTTTGCTGGC  504

Query  508  TTAGATAAAGCATCAGCTGATGACACATACAGATCTGTTAATAATCTGTGGAATAGTTAC  567
            |||||| ||||||||||||||| ||| |||| | ||||| ||||||||||||||||||||
Sbjct  505  TTAGATGAAGCATCAGCTGATGCCACTTACATAACTGTTGATAATCTGTGGAATAGTTAC  564

Query  568  CCGAAAGACGAGG  580
            |||||||| ||||
Sbjct  565  CCGAAAGAAGAGG  577


> Ahg943611 jgi|Araly1|943611|scaffold_604155.1
Length=1683

 Score =  185 bits (100),  Expect = 3e-46
 Identities = 117/125 (94%), Gaps = 2/125 (2%)
 Strand=Plus/Plus

Query  453   TGAAAAGGATCTTTTGTCATATTTGTTGCACGGGAAACACGAGATCTTTGCTGGGTTAGA  512
             |||||||||||||||||||||||| ||||| |||||| |||||||||||||||| |||||
Sbjct  1107  TGAAAAGGATCTTTTGTCATATTTATTGCATGGGAAAAACGAGATCTTTGCTGGCTTAGA  1166

Query  513   TA-AAGCATCAGCTGATGACACATACAGATCTGTTAATAATCTGTGGAATAGTTACCCGA  571
              | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  1167  -AGAAGCATCAGCTGATGACACATACAGAACTGTTGATAATCTGTGGAATAGTTACCCGA  1225

Query  572   AAGAC  576
             |||||
Sbjct  1226  AAGAC  1230


> Ahg947238 jgi|Araly1|947238|scaffold_703467.1
Length=661

 Score =  110 bits (59),  Expect = 2e-23
 Identities = 62/63 (98%), Gaps = 1/63 (2%)
 Strand=Plus/Plus

Query  561  TAGTTACCCGAAAGACGAGGAATTTGAACGGTTTGGGATTCCATCCAAGAGGGG-AAGAG  619
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  235  TAGTTACCCGAAAGACGAGGAATTTGAACGGTTTGGGATTCCATCCAAGAGGGGGAAGAG  294

Query  620  ACT  622
            |||
Sbjct  295  ACT  297



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25008633552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5