BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01360.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327649 jgi|Araly1|327649|fgenesh1_pm.C_scaffold_6002869 1323 0.0
> Ahg327649 jgi|Araly1|327649|fgenesh1_pm.C_scaffold_6002869
Length=1083
Score = 1323 bits (716), Expect = 0.0
Identities = 929/1028 (90%), Gaps = 30/1028 (3%)
Strand=Plus/Plus
Query 246 TCGGAACCCGTTCAAGATTCTGTTTACGAAGAAGAACAATGCTCGATTATCGCCAAAGCT 305
||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 48 TCGAAACCCGTTCAAGATTTTGTTTACGAAGAACAACAACGCTCGATTATCGCCAAAGCT 107
Query 306 TCTCTCACTGTTGAACAATTTCGAGACTAACTTGACGGTATCGATTAGAGAACTTGTACC 365
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 108 TCTCTCACTGTTGAACAATTTCGAGACTAACTTGATGGTATCGATTAGAGAACTTATACC 167
Query 366 AAAGGATAAGAATGATATCGTTAGTGTTTCTTGGATGATACAAGCCATGCAGTCTCTTTG 425
|||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 168 GAAGGATAAGAATGATATCATTAGTGTTTCTTGGATGATACAAGCTATGGAGTCTCTTTG 227
Query 426 TGAGACACACAAGAGTATCAGGACGCTCGTGAAGGATTTAGAGGTTCCAGTATCGGATTT 485
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct 228 TGAGACACACAAGAGTATCAGGACGCTCGTGACGGATTTAGAGCTTCCAGTATCGGACTT 287
Query 486 GGAGGAGAATTTCATTTATATCTTCTCTGACTTTAGCTTGAA---GCGGGAACTCTGCAA 542
|||||| ||||| |||||||||| ||||||| |||||||||| | |||||||||||
Sbjct 288 GGAGGAAAATTTGATTTATATCTACTCTGACATTAGCTTGAACCTCCTTGAACTCTGCAA 347
Query 543 CGCCTTTACCTCAGAGATATATCATTTGGAA-CATGGCAATCTATTACTAAAGTTTGCTT 601
|||||| | ||| |||||| ||| | | ||| ||||||||||||||||| ||||||||||
Sbjct 348 CGCCTTCATCTCTGAGATAGATCGTCT-GAACCATGGCAATCTATTACTCAAGTTTGCTT 406
Query 602 TTAGTAAGCTGGAGACAAAC-A--G-T--G-GCAATATTC--T-TC--A----G-C-GTT 643
|||||||||||||||||||| | | | | | | | ||| | || | | | |||
Sbjct 407 TTAGTAAGCTGGAGACAAACAACTGTTCAGAGGAGTTTTCGTTATCGTATCTTGACAGTT 466
Query 644 GGAATCAGCACATGGTTTCCAAGAACCCGAGTATCGAAAACTGGGGCGCGGTTTTGAGTA 703
||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||
Sbjct 467 GGAATCAGCACATGGTTTCCAAGAACCGGAGAATCGAAAACTGTGGCGCGGTTTTGAGTA 526
Query 704 GGCTGGTTGAATCGATGGATCATCATCATCATATCTCCAAGAAGGGGAAGAAGAAATACT 763
|||| ||||||||||| ||||||||||||| |||||||||||| |||||||||| |||
Sbjct 527 GGCTTGTTGAATCGATAGATCATCATCATC---TCTCCAAGAAGGCGAAGAAGAAACACT 583
Query 764 CTGCGGAAGGAAAAGTTCTCTTACGAGTTTTATACGGTGTAAAGGTCAAGACTTTATACA 823
|||||||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 584 CTGCGGAAGGAAAAGTCCTCTTGCGAGCTCTATACGGTGTAAAGGTCAAGACTTTATACA 643
Query 824 TATTCAGCGTGTTTGATGCAT-CGTTCTCGGGTTCTTCCAAGAATCTCTTCTATCTAACC 882
||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 644 TATTCAGCGTGTTTGCTGC-TGCGTTCTCGGGTTCTTCCAAGAATCTCTTCTATCTAAAC 702
Query 883 ATTCCAAAGGAGATGGAGGAGCTTCCATGGGTTCAAGCTTTCATGGAACTGCAGAACACT 942
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 703 ATTCCAAAGGAGATGGAGGAGCTTCCATGGGCACAAGCTTTCATGGAATTGCAGAACAGG 762
Query 943 ATTAACCCGGAGATCAAAAACACATTTTTATCAGACGGATTCACGGTTATAAAAGATCTC 1002
|||||||| | ||||||||||||||| ||||||||| |||||| |||||||||||||||
Sbjct 763 ATTAACCCAGTGATCAAAAACACATTCTTATCAGACAAATTCACTGTTATAAAAGATCTC 822
Query 1003 GAGGCTGTTGAAACCGGTGTGAAGAAGCTTTACACAGCGGTACAAGAAGGGTCGGTTCCT 1062
||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||
Sbjct 823 GAGGCTGTTGAAACCGGTGTGAAGAAGCTTTACTCAGAGGTACAAGAAGGGTCAGTTCCT 882
Query 1063 ATTTTGTTAGTGGAACCATTGGAGAAGTCAGTGATAGAACTTTCGGAAAGGTTTGAGCTA 1122
|||||||| || || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 883 ATTTTGTTGGTAGAGCCATTAAAGAAGTCAGTGATAGAACTTTCGGAAAGGTTTGAGCTT 942
Query 1123 GTCTCCAAGGAAACACGTTGCTTGTCGAAGATGGTGATCTCTGCCCGAGACGCATTGTTG 1182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GTCTCCAAGGAAACACGTTGCTTGTCGAAGATGGTGATCTCTGCCCGAGACGCATTGTTC 1002
Query 1183 GAGAGCCTGTGGACGAAATGCGC-AGAAGAGCTAGGAGTGACATTGCCAACGATGGTTAA 1241
|||||||| |||||||||| ||| | ||||||| |||||| |||||||| ||||||||||
Sbjct 1003 GAGAGCCTCTGGACGAAATACGCTA-AAGAGCTGGGAGTGGCATTGCCACCGATGGTTAA 1061
Query 1242 AAGTGTTA 1249
||||||||
Sbjct 1062 AAGTGTTA 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5