BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01370.1
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943609 jgi|Araly1|943609|scaffold_604153.1 1914 0.0
Ahg918805 jgi|Araly1|918805|scaffold_100086.1 822 0.0
> Ahg943609 jgi|Araly1|943609|scaffold_604153.1
Length=1171
Score = 1914 bits (1036), Expect = 0.0
Identities = 1104/1137 (97%), Gaps = 3/1137 (0%)
Strand=Plus/Plus
Query 123 CGATGTCGGCGGAGAGTTGTTTCGGAAGCTCGGGTGATCAAAGCAGCAGCAAAGGAGTGG 182
||||||||||||||| |||||||||||| || ||||||| || |||||||||||| ||
Sbjct 21 CGATGTCGGCGGAGACTTGTTTCGGAAGTTCAGGTGATC-AA--AGCAGCAAAGGATTGC 77
Query 183 CTACTCATGGTGGTAGCTATGTTCAGTATAATGTCTATGGCAATCTCTTCGAAGTTTCTA 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 CTACTCATGGTGGTAGCTATGTTCAGTATAATGTCTATGGCAATCTCTTCGAAGTTTCTA 137
Query 243 GAAAGTATGTTCCTCCTCTTCGTCCTATCGGTAGAGGCGCTTATGGAATTGTCTGTGCTG 302
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 138 GAAAGTATGTTCCTCCTCTTCGTCCCATCGGTAGAGGCGCTTATGGAATTGTCTGTGCTG 197
Query 303 CTACAAACTCAGAGACTGGAGAGGAGGTAGCTATCAAGAAGATTGGTAATGCTTTTGACA 362
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 198 CTACAAACTCAGAGACTGGAGAGGAAGTAGCTATCAAGAAGATTGGTAATGCTTTTGACA 257
Query 363 ATATTATCGATGCTAAAAGGACTTTGAGAGAGATTAAGCTTCTCAAGCATATGGATCATG 422
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 258 ATATTATCGATGCTAAAAGAACTTTGAGAGAGATTAAGCTTCTCAAGCATATGGATCATG 317
Query 423 AAAATGTGATTGCTGTAAAGGATATAATAAAACCACCGCAGAGAGAGAACTTCAATGATG 482
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AAAATGTGATTGCTGTCAAGGATATAATAAAACCACCGCAGAGAGAGAACTTCAATGATG 377
Query 483 TTTACATTGTTTATGAGCTTATGGACACTGATCTCCACCAAATTATTCGCTCTAACCAAC 542
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 378 TTTACATTGTTTATGAGCTTATGGACACTGATCTCCACCAAATTATACGCTCTAACCAAC 437
Query 543 CCTTAACTGATGATCATTGTCGGTTTTTTCTGTATCAGTTGTTGCGTGGGCTCAAATATG 602
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 438 CGTTAACTGATGATCATTGTCGGTTTTTTCTGTATCAGTTGTTGCGTGGCCTCAAATACG 497
Query 603 TTCATTCAGCTAATGTATTGCATCGAGATTTGAAACCTAGCAATTTGCTCCTGAATGCAA 662
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 498 TTCATTCAGCTAATGTATTGCACCGAGATTTGAAACCCAGCAATTTGCTCCTGAATGCAA 557
Query 663 ATTGTGATCTAAAGCTTGGGGATTTCGGGCTTGCGAGGACCAAATCCGAGACTGACTTTA 722
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 558 ATTGTGATCTAAAGCTTGGGGATTTCGGGCTTGCGAGGACCAAATCTGAGACAGACTTCA 617
Query 723 TGACTGAATATGTTGTTACACGTTGGTATCGAGCTCCAGAGCTGCTACTTAATTGCTCTG 782
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 618 TGACTGAATATGTTGTTACACGTTGGTATCGAGCTCCAGAGCTGCTCCTTAATTGCTCAG 677
Query 783 AATACACAGCAGCAATTGATATTTGGTCTGTCGGTTGTATACTCGGTGAAACAATGACAC 842
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 AATACACAGCAGCAATCGATATTTGGTCTGTCGGTTGTATACTCGGTGAAACAATGACAC 737
Query 843 GAGAGCCCTTGTTTCCCGGTAAAGATTATGTTCATCAGCTTAGACTCATCACTGAGCTTA 902
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 738 GAGAGCCGTTGTTTCCCGGTAAAGATTATGTTCATCAGCTTAGACTCATCACTGAGCTAA 797
Query 903 TAGGATCTCCTGATGACTCAAGCTTGGGATTCTTAAGAAGTGACAATGCAAGAAGATACG 962
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TAGGATCGCCTGATGACTCAAGCTTGGGATTCTTAAGAAGTGACAATGCAAGAAGATACG 857
Query 963 TTAGACAGCTTCCACAGTACCCTAGACAGAACTTTGCTGCTAGATTCCCAAACATGTCGG 1022
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 858 TTAGACAGCTTCCGCAGTACCCGAGACAGAACTTTGCTGCTAGATTCCCAAACATGTCGG 917
Query 1023 CTGGTGCAGTCGATTTGCTGGAGAAAATGCTTGTTTTTGATCCAAGCAGACGCATCACAG 1082
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 CTGGTGCAGTCGATTTACTGGAGAAAATGCTTGTTTTTGATCCAAGCAGACGCATCACAG 977
Query 1083 TTGATGAGGCGTTGTGCCACCCATATTTGGCGCCGCTGCATGATATCAACGAAGAACCGG 1142
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 978 TTGATGAGGCGTTGTGCCACCCATATTTGGCACCGCTGCATGATATAAACGAAGAACCGG 1037
Query 1143 TATGTGTGAGGCCGTTCAATTTTGATTTCGAGCAACCTACTTTGACAGAAGAGAACATTA 1202
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1038 TATGTGTGAGGCCGTTCAATTTCGATTTCGAGCAACCTACTTTGACAGAAGAGAACATTA 1097
Query 1203 AGGAGCTTATATACCGTGAAACAGTCAAGTTCAATCCTCAAGACTCAGTGTgagaga 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 AGGAGCTTATATACCGTGAAACAGTCAAGTTCAATCCTCAAGACTCAGTGTGAGAGA 1154
> Ahg918805 jgi|Araly1|918805|scaffold_100086.1
Length=1205
Score = 822 bits (445), Expect = 0.0
Identities = 645/741 (87%), Gaps = 16/741 (2%)
Strand=Plus/Plus
Query 166 CAGCAGCAAAGGAGTG-GCTACTC-ATGGTGGTAGCTATGTTCAGTATAATGTCTATGGC 223
||||| || ||||||| | || || | |||||| | |||||||||||||||||||||||
Sbjct 53 CAGCAACAGAGGAGTGAG-TA-TCAACGGTGGTCGTTATGTTCAGTATAATGTCTATGGA 110
Query 224 AATCTCTTCGAAGTTTCT-AGAAAGTATGTTCCTCCTCTTCGTCCTATCGGTAGAGGCGC 282
|| ||||||||||||||| | ||| |||||||||||||||||||||||||| ||||||||
Sbjct 111 AACCTCTTCGAAGTTTCTCA-AAAATATGTTCCTCCTCTTCGTCCTATCGGCAGAGGCGC 169
Query 283 TTATGGAATTGTCTGTGCTGCTA-CAAACTCAGAGACTGGAGAGGAGGTAGCTATCAAGA 341
|| ||| || ||||||||||| | || || ||||| || ||||| ||||| |||||||
Sbjct 170 TTCTGGCATCGTCTGTGCTGC-ATGGAATTCGGAGACGGGTGAGGAAGTAGCGATCAAGA 228
Query 342 AGATTGGTAATGCTTTTGACAATATTATCGATGCTAAAAGGACTTTGAGAGAGATTAAGC 401
|||||||||||||||||| ||| |||||||| ||||| || |||||||||||||||||||
Sbjct 229 AGATTGGTAATGCTTTTGGCAACATTATCGACGCTAAGAGAACTTTGAGAGAGATTAAGC 288
Query 402 TTCTCAAGCATATGGATCATGAAAATGTGATTG-C-TGTAAAGGATATAATAAAACCACC 459
|||| ||||||||||||||||| ||||| |||| | | |||| || ||||||| ||||||
Sbjct 289 TTCTTAAGCATATGGATCATGACAATGTCATTGCCAT-TAAA-GACATAATAAGACCACC 346
Query 460 GCAGAGAGAGAACTTCAATGATGTTTACATTGTTTATGAGCTT-ATGGACACTGATCTCC 518
|||| ||| ||||||||||||||| ||||||| |||||| || |||||||||||||| |
Sbjct 347 GCAGCCAGACAACTTCAATGATGTTCACATTGTCTATGAG-TTAATGGACACTGATCTTC 405
Query 519 ACCAAATTATTCGCTCTAACCAACCCTTAACTGATGATCATTGTCGGTTTTTTCTGTATC 578
| || ||||| |||||||||||||| |||||||||||||||| ||||| || |||||||
Sbjct 406 ATCACATTATACGCTCTAACCAACCGTTAACTGATGATCATTCACGGTTCTTCCTGTATC 465
Query 579 AGTTGTTGCGTGGGCTCAAATATGTTCATTCAGCTAATGTATTGCATCGAGATTTGAAAC 638
|||||||| | || ||||| ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 466 AGTTGTTGAGAGGACTCAAGTATGTGCATTCAGCTAATGTATTGCATCGTGATTTAAAAC 525
Query 639 CTAGCAATTTGCTCCTGAATGCAAATTGTGATCTAAAGCTTGGGGATTTCGGGCTTGCGA 698
| || || ||||||||||||||||||||||| || ||| |||||||||| |||||||| |
Sbjct 526 CAAGTAACTTGCTCCTGAATGCAAATTGTGACCTCAAGATTGGGGATTTTGGGCTTGCAA 585
Query 699 GGACCAAATCCGAGACTGACTTTATGACTGAATATGTTGTTACACGTTGGTATCGAGCTC 758
|||| ||||| ||||| ||||| ||||| |||||||| |||||||||||||| |||||||
Sbjct 586 GGACTAAATCAGAGACAGACTTCATGACAGAATATGTCGTTACACGTTGGTACCGAGCTC 645
Query 759 CAGAGCTGCTACTTAATTGCTCTGAATACACAGCAGCAATTGATATTTGGTCTGTCGGTT 818
||||| | || ||||||||||| |||||||| ||||| || |||||||||||||||||||
Sbjct 646 CAGAGTTACTCCTTAATTGCTCAGAATACACTGCAGCTATCGATATTTGGTCTGTCGGTT 705
Query 819 GTATACTCGGTGAAACAATGAC-ACGAGAGCCCTTGTTTCCCGGTAAAGATTATGTTCAT 877
||||||||||||||| |||||| | ||||||| || ||||| || | ||||||||||||
Sbjct 706 GTATACTCGGTGAAATAATGACCA-GAGAGCCGTTATTTCCGGGCAGAGATTATGTTCAG 764
Query 878 CAGCTTAGACTCATCACTGAG 898
|||||||||||||||||||||
Sbjct 765 CAGCTTAGACTCATCACTGAG 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54392869860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5