BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G01380.1

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936695 jgi|Araly1|936695|scaffold_500886.1                        381    3e-105
  Ahg928025 jgi|Araly1|928025|scaffold_300482.1                        165    4e-40 


> Ahg936695 jgi|Araly1|936695|scaffold_500886.1
Length=913

 Score =  381 bits (206),  Expect = 3e-105
 Identities = 346/410 (84%), Gaps = 23/410 (6%)
 Strand=Plus/Plus

Query  228  CTCCAAGGGATGGAGTGTTCC-GCAAGAAAGTTACTTTTATTAC-AGAT-GGAGTGAGAA  284
            ||| ||||| ||||||||||| | |||| |   ||||||||||| || | || | ||| |
Sbjct  491  CTCTAAGGGGTGGAGTGTTCCTG-AAGAGACCGACTTTTATTACAAG-TGGGCG-GAGCA  547

Query  285  GACG-CAGTTTCCGATCGGAGACAGTCTTCTTTTCGAATACGACAACGAAGTCAACGACG  343
            || | || |||   || |||||||  || ||||| ||||||| |||||||||||||||||
Sbjct  548  GA-GTCACTTTGATATTGGAGACAAACTACTTTTTGAATACGGCAACGAAGTCAACGACG  606

Query  344  TCTTA-GAGATCAGCGGGGACCTTGAATTCATATCCTGCT-ACCCGATTTCTCCCGTAGC  401
            || || ||||||||||| |||||||||||| ||||||| | ||| |||||||||  || |
Sbjct  607  TC-TACGAGATCAGCGGAGACCTTGAATTCTTATCCTG-TGACCGGATTTCTCCAATATC  664

Query  402  CGTGCACATGACAGGCCACGATCTCGTCACGCTCA-CAGAACCAGGAGTCCATTATTTCA  460
            |||||||| |||||| |||||||||||||| |||| || ||||||||||||| || ||||
Sbjct  665  CGTGCACAAGACAGGACACGATCTCGTCACACTCACCA-AACCAGGAGTCCACTACTTCA  723

Query  461  TTAGCTCTAAGACTCCAGGTCACTGTTACGCTGGGCTTAAGCTACGAGTCGTGGTCGGAC  520
            ||||||| ||||   ||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct  724  TTAGCTCAAAGA---CAGGTCACTGTGAGGCTGGGCTTAAACTACGAGTCGTGGTCGGAC  780

Query  521  CACTCACCAAAGCCGTACCTGTCCCCAATGTTCC-GACGAAGAAGATAGAGTTGTCACTT  579
            ||||||||||| ||||| |||||||||||||||| | ||||| |||| |||||| |||||
Sbjct  781  CACTCACCAAACCCGTAACTGTCCCCAATGTTCCTG-CGAAGCAGATGGAGTTGACACTT  839

Query  580  ATGGACC-GCTTCAACAGATGGTTACGCACCTTC-GGACCTCAACCCCAT  627
            ||||||| | | |||||||||||||||| ||||| || |||||||| |||
Sbjct  840  ATGGACCAG-TACAACAGATGGTTACGCTCCTTCAGG-CCTCAACCTCAT  887


> Ahg928025 jgi|Araly1|928025|scaffold_300482.1
Length=193

 Score =  165 bits (89),  Expect = 4e-40
 Identities = 115/127 (91%), Gaps = 3/127 (2%)
 Strand=Plus/Plus

Query  507  AGTCGTGGTCGGACCACTCACCAAAGCCGTACCTGTCCCCAATGTTCCGACGAAGAAGAT  566
            |||||||||||||||||||||||||||| || || |||||| |||||||||||||| |  
Sbjct  50   AGTCGTGGTCGGACCACTCACCAAAGCCATAACTTTCCCCAGTGTTCCGACGAAGATG--  107

Query  567  AGAGTTGTCACTTATGGACCGCTTCAACAGATGGTTACGCACCTTCGGACCTCAACCCCA  626
             |||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct  108  -GAGTTGTCTCTTATGGACCGCTTCAACAGATGGTTACGCACCTTCAGACCTGAACCCCA  166

Query  627  TCATTAA  633
            ||| |||
Sbjct  167  TCACTAA  173



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23178733536


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5