BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01380.1 Length=633 Score E Sequences producing significant alignments: (Bits) Value Ahg936695 jgi|Araly1|936695|scaffold_500886.1 381 3e-105 Ahg928025 jgi|Araly1|928025|scaffold_300482.1 165 4e-40 > Ahg936695 jgi|Araly1|936695|scaffold_500886.1 Length=913 Score = 381 bits (206), Expect = 3e-105 Identities = 346/410 (84%), Gaps = 23/410 (6%) Strand=Plus/Plus Query 228 CTCCAAGGGATGGAGTGTTCC-GCAAGAAAGTTACTTTTATTAC-AGAT-GGAGTGAGAA 284 ||| ||||| ||||||||||| | |||| | ||||||||||| || | || | ||| | Sbjct 491 CTCTAAGGGGTGGAGTGTTCCTG-AAGAGACCGACTTTTATTACAAG-TGGGCG-GAGCA 547 Query 285 GACG-CAGTTTCCGATCGGAGACAGTCTTCTTTTCGAATACGACAACGAAGTCAACGACG 343 || | || ||| || ||||||| || ||||| ||||||| ||||||||||||||||| Sbjct 548 GA-GTCACTTTGATATTGGAGACAAACTACTTTTTGAATACGGCAACGAAGTCAACGACG 606 Query 344 TCTTA-GAGATCAGCGGGGACCTTGAATTCATATCCTGCT-ACCCGATTTCTCCCGTAGC 401 || || ||||||||||| |||||||||||| ||||||| | ||| ||||||||| || | Sbjct 607 TC-TACGAGATCAGCGGAGACCTTGAATTCTTATCCTG-TGACCGGATTTCTCCAATATC 664 Query 402 CGTGCACATGACAGGCCACGATCTCGTCACGCTCA-CAGAACCAGGAGTCCATTATTTCA 460 |||||||| |||||| |||||||||||||| |||| || ||||||||||||| || |||| Sbjct 665 CGTGCACAAGACAGGACACGATCTCGTCACACTCACCA-AACCAGGAGTCCACTACTTCA 723 Query 461 TTAGCTCTAAGACTCCAGGTCACTGTTACGCTGGGCTTAAGCTACGAGTCGTGGTCGGAC 520 ||||||| |||| ||||||||||| | ||||||||||| ||||||||||||||||||| Sbjct 724 TTAGCTCAAAGA---CAGGTCACTGTGAGGCTGGGCTTAAACTACGAGTCGTGGTCGGAC 780 Query 521 CACTCACCAAAGCCGTACCTGTCCCCAATGTTCC-GACGAAGAAGATAGAGTTGTCACTT 579 ||||||||||| ||||| |||||||||||||||| | ||||| |||| |||||| ||||| Sbjct 781 CACTCACCAAACCCGTAACTGTCCCCAATGTTCCTG-CGAAGCAGATGGAGTTGACACTT 839 Query 580 ATGGACC-GCTTCAACAGATGGTTACGCACCTTC-GGACCTCAACCCCAT 627 ||||||| | | |||||||||||||||| ||||| || |||||||| ||| Sbjct 840 ATGGACCAG-TACAACAGATGGTTACGCTCCTTCAGG-CCTCAACCTCAT 887 > Ahg928025 jgi|Araly1|928025|scaffold_300482.1 Length=193 Score = 165 bits (89), Expect = 4e-40 Identities = 115/127 (91%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 507 AGTCGTGGTCGGACCACTCACCAAAGCCGTACCTGTCCCCAATGTTCCGACGAAGAAGAT 566 |||||||||||||||||||||||||||| || || |||||| |||||||||||||| | Sbjct 50 AGTCGTGGTCGGACCACTCACCAAAGCCATAACTTTCCCCAGTGTTCCGACGAAGATG-- 107 Query 567 AGAGTTGTCACTTATGGACCGCTTCAACAGATGGTTACGCACCTTCGGACCTCAACCCCA 626 |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 108 -GAGTTGTCTCTTATGGACCGCTTCAACAGATGGTTACGCACCTTCAGACCTGAACCCCA 166 Query 627 TCATTAA 633 ||| ||| Sbjct 167 TCACTAA 173 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23178733536 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5