BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01410.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943606 jgi|Araly1|943606|scaffold_604150.1 992 0.0
Ahg943306 jgi|Araly1|943306|scaffold_603850.1 357 9e-98
Ahg913145 jgi|Araly1|913145|Al_scaffold_0001_3399 355 3e-97
Ahg915788 jgi|Araly1|915788|Al_scaffold_0008_539 335 4e-91
Ahg906756 jgi|Araly1|906756|Al_scaffold_0003_3884 272 3e-72
> Ahg943606 jgi|Araly1|943606|scaffold_604150.1
Length=729
Score = 992 bits (537), Expect = 0.0
Identities = 622/664 (94%), Gaps = 1/664 (0%)
Strand=Plus/Plus
Query 176 AGCCAAAGCAGATCACAAGAACGCTCCCTCCGCTTCTTCAACGCCAGAATCTTACTCTAA 235
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 57 AGCCAAAGCAGATCACAAGAACGCTCCCTCCGCTTCGTCAACGCCGGAATCTTACTCTAA 116
Query 236 AGAAGGCGGAGGAGGCGGTGGAGATGCTCGCCGCGCAATCTGCGGCGCGATCTTCACCAT 295
|| || ||||| |||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 117 AGGTGGAGGAGGCGGCGGTGGAGGTGCTCTCCGCGCAATCTGCGGCGCGATCTTCACGGT 176
Query 296 CCTTGTCATACTAGGTATCATAGCCTTAATCCTTTGGCTCGTCTACCGTCCACATAAACC 355
||| || ||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 177 CCTCATCTTACTAGGTATCATCGCTTTAATCCTTTGGCTCGTCTACCGTCCACACAAACC 236
Query 356 ACGTCTCACCGTCGTCGGAGCCGCCATCTACGACCTGAATTTCACAGCGCCGCCGTTAAT 415
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 237 ACGTCTCACCGTCGTCGGAGCCGCCATCTACGACCTCAACTTCACGGCGCCGCCGTTAAT 296
Query 416 CTCAACCTCCGTTCAGTTCAGCGTTTTAGCAAGAAACCCTAACCGGAGAGTCTCCATTCA 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 297 CTCCACCTCCGTTCAGTTCAGCGTTTTGGCAAGAAACCCTAACCGGAGAGTATCAATTCA 356
Query 476 CTACGACAAGCTCTCTATGTACGTAACGTACAAAGATCAGATCATAACACCGCCGCTTCC 535
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 357 CTACGACAAGCTCTCTATGTACGTAACGTACAAAAATCAGATCATAACACCGCCGCTTCC 416
Query 536 ACTACCACCGCTTCGTTTAGGACATAAATCTACGGTTGTGATAGCTCCGGTGATGGGAGG 595
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 417 GTTACCGCCGCTTCGTTTAGGACATAAATCTACGGTGGTGATAGCTCCGGTGATGGGAGG 476
Query 596 CAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCTTACGG 655
||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct 477 CAACGGTATACCAGTTTCGCCGGAAGTGGCTAACGGTTTGAAGAATGATGAAGCTTACGG 536
Query 656 CGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCGATTAA 715
|||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 537 TGTCGTTTTGATGAGAGTGGTGATTTTAGGGAGGCTCCGATGGAAAGCTGGTGCGATTAA 596
Query 716 GACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCATCTTC 775
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 597 GACTGGACGGTATGGATTTTATGCCAGGTGTGATGTGTGGTTGAGATTTAATCCATCTTC 656
Query 776 TAACGGACAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAGtcttaa-t 834
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 657 TAATGGAGAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAGTCTTAAAT 716
Query 835 ttta 838
||||
Sbjct 717 TTTA 720
> Ahg943306 jgi|Araly1|943306|scaffold_603850.1
Length=494
Score = 357 bits (193), Expect = 9e-98
Identities = 223/238 (94%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 594 GGCAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCTTAC 653
||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||
Sbjct 241 GGCAACGGTATACCAGTTTCGCCGGAAGTGGCTAACGGTTTGAAGAATGATGAAGCTTAC 300
Query 654 GGCGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCGATT 713
|| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 301 GGTGTCGTTTTGATGAGAGTGGTGATTTTAGGGAGGCTCCGATGGAAAGCTGGTGCGATT 360
Query 714 AAGACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCATCT 773
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 361 AAGACTGGACGGTATGGATTTTATGCAAGGTGTGATGTGTGGTTGAGATTTAATCCATCT 420
Query 774 TCTAACGGACAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAGtctt 831
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 CCTAATGGACAAGTTCCTCTTCTCGCTCCGTCAACTTGTAAAGTTGATGTCTAGTCTT 478
> Ahg913145 jgi|Araly1|913145|Al_scaffold_0001_3399
Length=726
Score = 355 bits (192), Expect = 3e-97
Identities = 222/237 (94%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 591 GGAGGCAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCT 650
|||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||
Sbjct 490 GGAGGCAACGGTATACCAGTTTCGCCGGAAGTGGCTAACGGTTTGAAGAATGATGAAGCT 549
Query 651 TACGGCGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCG 710
||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 550 TACGGTGTCGTTTTGATGAGAGTGGTGATTTTAGGGAGGCTCCGATGGAAAGCTGGTGCG 609
Query 711 ATTAAGACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCA 770
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 610 ATTAAGACTGGACGGTATGGATTTTATGCAAGGTGTGATGTGTGGTTGAGATTTAATCCA 669
Query 771 TCTTCTAACGGACAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAG 827
||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 670 TCTCCTAATGGACAAGTTCCTCTTCTCGCTCCGTCAACTTGTAAAGTTGATGTCTAG 726
> Ahg915788 jgi|Araly1|915788|Al_scaffold_0008_539
Length=735
Score = 335 bits (181), Expect = 4e-91
Identities = 222/241 (92%), Gaps = 5/241 (2%)
Strand=Plus/Plus
Query 591 GGAGGCAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCT 650
|||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||
Sbjct 496 GGAGGCAACGGTATACCAGTTTCGCCGGAAGTGGCTAACGGTTTGAAGAATGATGAAGCT 555
Query 651 TACGGCGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCG 710
||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 556 TACGGTGTCGTTTTGATGAGAGTGGTGATTTTAGGGAGGCTCCGATGGAAAGCTGGTGCG 615
Query 711 ATTAAGACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCA 770
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 616 ATTAAGACTGGACGGTATGGATTTTATGCAAGGTGTGATGTGTGGTTGAGATTTAATCCA 675
Query 771 TCTTCT-AACGGACAAGTTCCTC-T-T-CTCGCTCCTTCAACTTGTAAAGTTGATGTCTA 826
||| || || ||||||||||||| | | |||||||| |||||||||||||||||||||||
Sbjct 676 TCT-CTTAATGGACAAGTTCCTCCTCTTCTCGCTCCGTCAACTTGTAAAGTTGATGTCTA 734
Query 827 G 827
|
Sbjct 735 G 735
> Ahg906756 jgi|Araly1|906756|Al_scaffold_0003_3884
Length=624
Score = 272 bits (147), Expect = 3e-72
Identities = 171/183 (93%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 561 AAATCTACGGTTGTGATAGCTCCGGTGATGGGAGGCAACGGTATACCAGTCTCGCCGGAA 620
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 67 AAATCTACGGTGGTGATAGCTCCGGTGATTGGAGGCAACGGTATACCAGTTTCGCCGGAA 126
Query 621 GTAGCTAATGGTTTAAAAAATGATGAAGCTTACGGCGTCGTTTTGATGAGAGTGGTGATT 680
|||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 127 GTAGCTAACGGTTTGAAGAATGATGAAGCTTACGGTGTCGTTTTGATGAGAGTGGTGATT 186
Query 681 TTTGGGAGGCTACGTTGGAAAGCTGGTGCGATTAAGACTGGACGGTATGGATTTTACGCC 740
|| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 187 TTAGGGAGGCTCCGATGGAAAGCTGGTGCGATTAAGACTGGACGGTATGGATTTTATGCA 246
Query 741 AGA 743
|||
Sbjct 247 AGA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5