BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01410.1 Length=1005 Score E Sequences producing significant alignments: (Bits) Value Ahg943606 jgi|Araly1|943606|scaffold_604150.1 992 0.0 Ahg943306 jgi|Araly1|943306|scaffold_603850.1 357 9e-98 Ahg913145 jgi|Araly1|913145|Al_scaffold_0001_3399 355 3e-97 Ahg915788 jgi|Araly1|915788|Al_scaffold_0008_539 335 4e-91 Ahg906756 jgi|Araly1|906756|Al_scaffold_0003_3884 272 3e-72 > Ahg943606 jgi|Araly1|943606|scaffold_604150.1 Length=729 Score = 992 bits (537), Expect = 0.0 Identities = 622/664 (94%), Gaps = 1/664 (0%) Strand=Plus/Plus Query 176 AGCCAAAGCAGATCACAAGAACGCTCCCTCCGCTTCTTCAACGCCAGAATCTTACTCTAA 235 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 57 AGCCAAAGCAGATCACAAGAACGCTCCCTCCGCTTCGTCAACGCCGGAATCTTACTCTAA 116 Query 236 AGAAGGCGGAGGAGGCGGTGGAGATGCTCGCCGCGCAATCTGCGGCGCGATCTTCACCAT 295 || || ||||| |||||||||| ||||| ||||||||||||||||||||||||||| | Sbjct 117 AGGTGGAGGAGGCGGCGGTGGAGGTGCTCTCCGCGCAATCTGCGGCGCGATCTTCACGGT 176 Query 296 CCTTGTCATACTAGGTATCATAGCCTTAATCCTTTGGCTCGTCTACCGTCCACATAAACC 355 ||| || ||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 177 CCTCATCTTACTAGGTATCATCGCTTTAATCCTTTGGCTCGTCTACCGTCCACACAAACC 236 Query 356 ACGTCTCACCGTCGTCGGAGCCGCCATCTACGACCTGAATTTCACAGCGCCGCCGTTAAT 415 |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 237 ACGTCTCACCGTCGTCGGAGCCGCCATCTACGACCTCAACTTCACGGCGCCGCCGTTAAT 296 Query 416 CTCAACCTCCGTTCAGTTCAGCGTTTTAGCAAGAAACCCTAACCGGAGAGTCTCCATTCA 475 ||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| Sbjct 297 CTCCACCTCCGTTCAGTTCAGCGTTTTGGCAAGAAACCCTAACCGGAGAGTATCAATTCA 356 Query 476 CTACGACAAGCTCTCTATGTACGTAACGTACAAAGATCAGATCATAACACCGCCGCTTCC 535 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 357 CTACGACAAGCTCTCTATGTACGTAACGTACAAAAATCAGATCATAACACCGCCGCTTCC 416 Query 536 ACTACCACCGCTTCGTTTAGGACATAAATCTACGGTTGTGATAGCTCCGGTGATGGGAGG 595 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 417 GTTACCGCCGCTTCGTTTAGGACATAAATCTACGGTGGTGATAGCTCCGGTGATGGGAGG 476 Query 596 CAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCTTACGG 655 ||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||| Sbjct 477 CAACGGTATACCAGTTTCGCCGGAAGTGGCTAACGGTTTGAAGAATGATGAAGCTTACGG 536 Query 656 CGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCGATTAA 715 |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct 537 TGTCGTTTTGATGAGAGTGGTGATTTTAGGGAGGCTCCGATGGAAAGCTGGTGCGATTAA 596 Query 716 GACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCATCTTC 775 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 597 GACTGGACGGTATGGATTTTATGCCAGGTGTGATGTGTGGTTGAGATTTAATCCATCTTC 656 Query 776 TAACGGACAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAGtcttaa-t 834 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 657 TAATGGAGAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAGTCTTAAAT 716 Query 835 ttta 838 |||| Sbjct 717 TTTA 720 > Ahg943306 jgi|Araly1|943306|scaffold_603850.1 Length=494 Score = 357 bits (193), Expect = 9e-98 Identities = 223/238 (94%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 594 GGCAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCTTAC 653 ||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||| Sbjct 241 GGCAACGGTATACCAGTTTCGCCGGAAGTGGCTAACGGTTTGAAGAATGATGAAGCTTAC 300 Query 654 GGCGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCGATT 713 || |||||||||||||||||||||||||| |||||||| || |||||||||||||||||| Sbjct 301 GGTGTCGTTTTGATGAGAGTGGTGATTTTAGGGAGGCTCCGATGGAAAGCTGGTGCGATT 360 Query 714 AAGACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCATCT 773 ||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| Sbjct 361 AAGACTGGACGGTATGGATTTTATGCAAGGTGTGATGTGTGGTTGAGATTTAATCCATCT 420 Query 774 TCTAACGGACAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAGtctt 831 |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 421 CCTAATGGACAAGTTCCTCTTCTCGCTCCGTCAACTTGTAAAGTTGATGTCTAGTCTT 478 > Ahg913145 jgi|Araly1|913145|Al_scaffold_0001_3399 Length=726 Score = 355 bits (192), Expect = 3e-97 Identities = 222/237 (94%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 591 GGAGGCAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCT 650 |||||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||| Sbjct 490 GGAGGCAACGGTATACCAGTTTCGCCGGAAGTGGCTAACGGTTTGAAGAATGATGAAGCT 549 Query 651 TACGGCGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCG 710 ||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct 550 TACGGTGTCGTTTTGATGAGAGTGGTGATTTTAGGGAGGCTCCGATGGAAAGCTGGTGCG 609 Query 711 ATTAAGACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCA 770 |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct 610 ATTAAGACTGGACGGTATGGATTTTATGCAAGGTGTGATGTGTGGTTGAGATTTAATCCA 669 Query 771 TCTTCTAACGGACAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAG 827 ||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 670 TCTCCTAATGGACAAGTTCCTCTTCTCGCTCCGTCAACTTGTAAAGTTGATGTCTAG 726 > Ahg915788 jgi|Araly1|915788|Al_scaffold_0008_539 Length=735 Score = 335 bits (181), Expect = 4e-91 Identities = 222/241 (92%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 591 GGAGGCAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCT 650 |||||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||| Sbjct 496 GGAGGCAACGGTATACCAGTTTCGCCGGAAGTGGCTAACGGTTTGAAGAATGATGAAGCT 555 Query 651 TACGGCGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCG 710 ||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct 556 TACGGTGTCGTTTTGATGAGAGTGGTGATTTTAGGGAGGCTCCGATGGAAAGCTGGTGCG 615 Query 711 ATTAAGACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCA 770 |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct 616 ATTAAGACTGGACGGTATGGATTTTATGCAAGGTGTGATGTGTGGTTGAGATTTAATCCA 675 Query 771 TCTTCT-AACGGACAAGTTCCTC-T-T-CTCGCTCCTTCAACTTGTAAAGTTGATGTCTA 826 ||| || || ||||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 676 TCT-CTTAATGGACAAGTTCCTCCTCTTCTCGCTCCGTCAACTTGTAAAGTTGATGTCTA 734 Query 827 G 827 | Sbjct 735 G 735 > Ahg906756 jgi|Araly1|906756|Al_scaffold_0003_3884 Length=624 Score = 272 bits (147), Expect = 3e-72 Identities = 171/183 (93%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 561 AAATCTACGGTTGTGATAGCTCCGGTGATGGGAGGCAACGGTATACCAGTCTCGCCGGAA 620 ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 67 AAATCTACGGTGGTGATAGCTCCGGTGATTGGAGGCAACGGTATACCAGTTTCGCCGGAA 126 Query 621 GTAGCTAATGGTTTAAAAAATGATGAAGCTTACGGCGTCGTTTTGATGAGAGTGGTGATT 680 |||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||| Sbjct 127 GTAGCTAACGGTTTGAAGAATGATGAAGCTTACGGTGTCGTTTTGATGAGAGTGGTGATT 186 Query 681 TTTGGGAGGCTACGTTGGAAAGCTGGTGCGATTAAGACTGGACGGTATGGATTTTACGCC 740 || |||||||| || ||||||||||||||||||||||||||||||||||||||||| || Sbjct 187 TTAGGGAGGCTCCGATGGAAAGCTGGTGCGATTAAGACTGGACGGTATGGATTTTATGCA 246 Query 741 AGA 743 ||| Sbjct 247 AGA 249 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37360458660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5