BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01420.1
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327645 jgi|Araly1|327645|fgenesh1_pm.C_scaffold_6002865 898 0.0
> Ahg327645 jgi|Araly1|327645|fgenesh1_pm.C_scaffold_6002865
Length=612
Score = 898 bits (486), Expect = 0.0
Identities = 573/615 (93%), Gaps = 6/615 (1%)
Strand=Plus/Plus
Query 1 ATGGGATGTGTTTGCAGCAAGCAA-TTAGAAGGAAGAAGGCAAGAAGACATTTCGCTTCT 59
||||||||||| ||||||||| || ||||||||||||||||| ||||||||| | |||||
Sbjct 1 ATGGGATGTGTATGCAGCAAG-AACTTAGAAGGAAGAAGGCATGAAGACATTACCCTTCT 59
Query 60 TGCTTCTCAAACCTTTTTTAGCGAGGCTGAGGTTGAAGTTTTGCATGGATTGTTCATCAA 119
|||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |
Sbjct 60 TGCTTCTCAAACCTTTTTTAGCGAGGCTGAGGTTGAAGTTCTGCATGAATTATTCATCCA 119
Query 120 ACTCACTTCTTGTCTTAGCAACGACAATCTTTTGACCAAAGAAAAATTTCAATTTATCTT 179
||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 120 ACTCACTTCTTGTCTCAGCAACGACAATCTTTTGACCAAAGAACATTTTCAATTCATCTT 179
Query 180 GATCAAGAATACCAAAAAGCGCAGTCTTTCTGCAGAACGGATTTTTGGATTATTCGATAT 239
|||||||||||||| | ||||||| ||||||| || |||||||| ||||||||||||||
Sbjct 180 AATCAAGAATACCAATAGGCGCAGTATTTCTGCTGACCGGATTTTCGGATTATTCGATAT 239
Query 240 GAGAAACGATGGGGCTATAGATTTTGGAGAGTTTGTACACACACTCAACATTTTTCACCC 299
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 GAGAAACGATGGGGCAATAGATTTTGGAGAGTTTGTACACACTCTCAACATTTTTCACCC 299
Query 300 AAACTCATCACC-AAGAGATAAGGCCATATTTGCATTTAGATTATACGATACTCGTGAGA 358
||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 AAACTCATC-CCAAAGAGATAAGGCCATATTTGCATTTAGATTATACGATACTCGTCAGA 358
Query 359 CTGGATTCATTGAACCGGAGGAGGTGAAAGAGATGATAATAGACGTTCTAGAGGAATCAG 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 CTGGATTCATTGAACCGGAGGAGGTTAAAGAGATGATAATAGACGTTCTAGAGGAATCAG 418
Query 419 AACTTATGCTATCCGAGAGTATCATTGATTCTATCGTGTCTAAGACATTTGAAGAGGCCG 478
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 419 AACTTATGCTATCCGAGAGTATCATCGATTCTATCGTGTCTAAAACATTTGAAGAGGCGG 478
Query 479 ATTGGAAAAAAGATGGGATAATAGATTTGGAAGAATGGGAGAATTTTGTTGCCACCTATC 538
|||||||||| ||||||| ||||||||| |||||||||||| |||||||||||| |||||
Sbjct 479 ATTGGAAAAAGGATGGGAAAATAGATTTAGAAGAATGGGAGGATTTTGTTGCCAACTATC 538
Query 539 CTTTGACACTAAAGAACATGACTATCCCTTTCTTGAAGGACATTCCGAGGATTTTCCCAA 598
||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 539 CTTGGACACTAAAGAACATGACTATCCCTTTCTTGAAGGACATACCAAGGATTTTTCCAA 598
Query 599 CCTTTCT-CCGGTAA 612
| || || |||||||
Sbjct 599 CATT-CTTCCGGTAA 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22378152279
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5