BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01430.1
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490434 jgi|Araly1|490434|fgenesh2_kg.6__3568__AT4G01430.1 1884 0.0
> Ahg490434 jgi|Araly1|490434|fgenesh2_kg.6__3568__AT4G01430.1
Length=1224
Score = 1884 bits (1020), Expect = 0.0
Identities = 1161/1227 (95%), Gaps = 18/1227 (1%)
Strand=Plus/Plus
Query 1 GGTTGCCaaacacaaagaaaaacattcgacattacagaaaagaaaaaactataagaaaat 60
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1 GGTTGCCAAACGCAAAGAAAAACATTCGACATTACAGAAAA-CAAAAACTATAAAAAAAT 59
Query 61 cttaattaataaaataatataTTCAG-GAG-G-GCga--gagagaga--gagagGGATGA 113
||||||||||||||||| |||||||| ||| | | || |||||||| ||||||||||
Sbjct 60 CTTAATTAATAAAATAAAATATTCAGAGAGAGAGAGAGGGAGAGAGATTGAGAGGGATGG 119
Query 114 TGAAGGAAGAACAATGGGCACCAGTGATAGTAATGTTAATATCAAGTGTTGCAATGGGAT 173
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 TGAAGGAAGAACAATGGGCACCAGTAATAGTAATGTTAATATCAAGTGTTGCAATGGGAT 179
Query 174 CAGTGAACGCTCTCGTTAAGAAAGCACTTGATGTTGGTGTTAACCATATGATCTTTGGTG 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAGTGAACGCTCTCGTTAAGAAAGCACTTGATGTTGGTGTTAACCATATGATCTTTGGTG 239
Query 234 CTTATAGAATGGCTATTTCTGCTCTAATCTTGGTTCCGTTTTCTTATATTTGGGAGAGGA 293
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 CTTATAGAATGGCTATTTCTGCTCTAATCTTGGTTCCGTTTTCTTTTATTTGGGAGAGGA 299
Query 294 AAACAAGGCCACAACTAACGTTCATGCTTTTGTGCGAACATTTCATCAGCGGATTACTTG 353
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAACAAGGCCACAGCTAACGCTCATGCTTTTGTGCGAACATTTCATCAGCGGATTACTTG 359
Query 354 GGGCAAGTTTGATGCAATTTTTCTTTTTACTTGGGCTTTCGTACACGTCAGCAACTGTTT 413
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 360 GGGCAAGTTTGATGCAATTTTTCTTTTTACTTGGACTATCGTACACGTCAGCAACTGTTT 419
Query 414 CGATGGCTCTAGTTAGCATGTTACCTGCTATCACCTTTGCGTTAGCCCTTATTTTCCGGA 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 420 CGATGGCTCTAGTTAGCATGTTACCTGCTATCACCTTTGCGTTAGCCCTTATTTTCAGGA 479
Query 474 TAGAGAATGCGCAAAACCTAAAGAGCAAAGCAGGCGTGCTCAAAGTAATGGGAACCCTAA 533
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 480 TAGAGAATGCGCAAAACCTGAAGAGCAAAGCAGGTGTTCTCAAAGTAATGGGAACCCTAA 539
Query 534 TTTGCATAATGGGAGCAATGTTGTTGACATTTTACAAAGGCCCAGAGTTATCAAACCCTC 593
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 540 TTTGCATAATGGGAGCTATGTTATTGACATTTTACAAAGGCCCAGAGTTATCAAACCCGC 599
Query 594 ATTCTCATCCACAAGCTCGTCACAACAACAACA----A--TAACAATGGTCACGACCAAA 647
|||||||||||| ||||| |||||||||||||| | |||||| |||||||||||||
Sbjct 600 ATTCTCATCCACGAGCTCTTCACAACAACAACACGTTACATAACAACGGTCACGACCAAA 659
Query 648 CAAAGAAATGGCTTCTAGGCTGTCTTTATTT-AGTCATTGGGACAGTGTTGTTGTCTCTA 706
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 660 CAAAGAAATGGCTTCTAGGCTGTCTTTATTTGA-TCATTGGGACAGTGTTGTTGTCTCTA 718
Query 707 TGGATGTTGTTTCAAGGGAAATTAAGCTTTAAGTATCCTGGAAATAAATACTCAAGCACT 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGGATGTTGTTTCAAGGGAAATTAAGCTTTAAGTATCCTGGAAATAAATACTCAAGCACT 778
Query 767 TGTCTCATGTCAGTCTTCGCATCATTTCAATGTGCTATTTTGAGTCTTTATAAAAGTAGA 826
||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct 779 TGTCTCATGTCAGTCTTTGCTTCATTTCAATGTGCTATTTTGAGTCTTTACAAGAGTAGA 838
Query 827 GACGTCAAAGATTGGATCATTGAAGATAAATTCGTCATTTTGGTCACCCTTTACGCTGGA 886
||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 839 GACGTCAAAGATTGGATTATAGAAGATAAATTCGTCATTTTCATCACCCTTTACGCTGGA 898
Query 887 ATAGTGGGACAAGCGATGTCGACAGTGGTAACGTCATGGTCCATAAAAATGACAGGAGCA 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATAGTGGGACAAGCGATGTCGACAGTGGTAACGTCATGGTCCATAAAAATGACAGGAGCA 958
Query 947 GTTTTCGTCTCAACATTCAGCCCCGTCAGCCTCGTCGCCGCTACGTTATTCGATTTCCTC 1006
||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||
Sbjct 959 GTTTTCGTCTCAACATTCAGCCCCGTCAGTCTCGTCGCGGCTACCTTATTCGACTTCCTC 1018
Query 1007 ATCTTACACTCTCCTTTATACCTTGGCAGCATACTTGGATCAG-TAGTGACTATAACTGG 1065
||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||
Sbjct 1019 ATCTTACACTCTCCTTTATACCTCGGCAGCATACTTGGATC-GCTAGTGACTATAACAGG 1077
Query 1066 CCTCTACGTTTTTCTTTGGGGAAGGAAGAATGAGACAGATCAGTCTGTTTCGAAGACTTT 1125
||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 1078 CCTTTACGTGTTTCTCTGGGGAAGGAAGATTGAGACAGATCAGTCTGTTTCGACGACTCT 1137
Query 1126 GAACAGTTCCCAGTTTTCTCAGAATAAGGATAACGAAGACCATACAATAGCAAATCATAA 1185
||||||||||||||||| ||||||||| || ||||||||||||| |||| ||||||||||
Sbjct 1138 GAACAGTTCCCAGTTTTGTCAGAATAATGAAAACGAAGACCATATAATAACAAATCATAA 1197
Query 1186 GGATACTAATTTGCCCGTTTGatatat 1212
|||||||||||||||||||||| ||||
Sbjct 1198 GGATACTAATTTGCCCGTTTGACATAT 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51955094180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5