BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01440.1
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490432 jgi|Araly1|490432|fgenesh2_kg.6__3566__AT4G01440.1 1851 0.0
> Ahg490432 jgi|Araly1|490432|fgenesh2_kg.6__3566__AT4G01440.1
Length=1322
Score = 1851 bits (1002), Expect = 0.0
Identities = 1231/1336 (92%), Gaps = 38/1336 (3%)
Strand=Plus/Plus
Query 12 CCCCTTAGAGAAACA-AAA-AGAATACAAAAA-GAAGAGAGAGATTAGTTATTAACTTAT 68
||||||||||||||| ||| |||| | ||||| ||||||||||||||| |||||||||||
Sbjct 1 CCCCTTAGAGAAACACAAACAGAA-AAAAAAAGGAAGAGAGAGATTAGCTATTAACTTAT 59
Query 69 TCATAATAAGTGTAATTACTTCGTATTTACttttttttGGTTAGCAGTCGACTAGT-AAT 127
||||||| | |||||||| | | ||| | || ||||| ||||||||||| |||
Sbjct 60 TCATAAT-A-CGTAATTAC-T--T-TTT-C------TT-GTTAGTAGTCGACTAGTAAAT 105
Query 128 CAATAATGGGTTACTGCGATGGTAAATGGACACCGGTGATTATTATGGTTATGATCAATT 187
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 106 TAATAATGGGTTACTGCGATGGTAAATGGACACCGGTGATTATCATGGTTATGATTAATT 165
Query 188 CAGCGCTGGGTTTAGCTAATGCTTTGGTTAAAAAAGTACTCGATGGTGGTGTTAACCATA 247
| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CGGCGCTGGGTTTAGGTAACGCTTTGGTTAAAAAAGTACTCGATGGTGGTGTTAACCATA 225
Query 248 TGGTTATCGCAACATATCGTCTTGCTATTTCAACCCTATTTTTGGCACCAATCGCAtttt 307
|||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||
Sbjct 226 TGGTTATCGCAACATATCGTCTCGCTATTTCTACCGTATTTTTGGCACCAATCGCATATT 285
Query 308 tttGGGAACGGAAAACGAGACCGACACTAACGCTCAACATCTTGGTTCAGCTTTTCTTCA 367
|||||||||||||||| ||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 286 TTTGGGAACGGAAAACAAGACCGAAACTTACGCTCAACATCATGGTTCAGCTTTTCTTCA 345
Query 368 GTGCTCTTGTTGGGGCAAGTTTGACTCAGTATTTCTTCCTATTGGGGCTATCATACACAT 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GTGCTCTTGTTGGGGCAAGTTTGACTCAGTATTTCTTCCTATTGGGGCTATCATACACAT 405
Query 428 CGGCTACGTTGGCATGTGCTTTTATTAGCATGACGCCTGCGATTACATTCGTTATGGCTC 487
|||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 406 CGGCTACGTTAGCTTGTGCTTTTATTAGCATGACACCTGCGGTTACATTCGTTATGGCTC 465
Query 488 TAATATTCAGGGTAGAGAAGCTAAACATGAAAAGCAAAGCAGGTATGGGGATGGTGATGG 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 TAATATTCAGGGTAGAGAAGCTAAACATGAAAAGCAAAGCAGGTATGGGGATGGTGATGG 525
Query 548 GCGCGTTGATATGCATAGGAGGAGCTTTATTATTAACAATGTACAAAGGTGTTCCCTTGA 607
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 526 GCGCTTTGATATGCATAGGAGGAGCTTTATTATTCACAATGTACAAAGGTGTTCCCTTGA 585
Query 608 CAAAACTTCGGAAACTAGAAACCCATCAGTTGATAAACAATAAC-CACGCTATGAAACCA 666
||||||||| |||||||||||||||||||||||| ||||||| || || ||||||||
Sbjct 586 CAAAACTTCACAAACTAGAAACCCATCAGTTGATATACAATAAAACA-GCAATGAAACCC 644
Query 667 GAGAATTGGATAATAGGATGCGTACTTCTCTTTGCGGGTAGTAGCTGTTTCGGGTCGTGG 726
|| ||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 645 GAAAATTGGATAATCGGATGCGCACTTCTCTTTGCGGGTAGCAGCTGTTTCGGGTCGTGG 704
Query 727 ATGCTGATACAAGCCAAAGTGAACGAGAAATACCCTTGTCAATACTCGAGTACTGTCGTA 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 705 ATGCTGATACAAGCCAAAGTGAACGAGAAATACCCTTGTCAATACTCGAGTACTGTTGTG 764
Query 787 TTATCCTTCTTTGGCACCATCCAATGCGCCCTTCTAAGCCTCATCAAATCTCGAGATATC 846
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TTATCCTTCTTTGGTACCATCCAATGCGCCCTTCTAAGCCTCATCAAATCTCGAGATATC 824
Query 847 ACGGCTTGGATCCTCACAGATAAACTTGATATCGTTACCATTGTTTACGCGGGAGCAGTA 906
|||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||| |||
Sbjct 825 ACGGCTTGGATCCTCACAGATAAACTCGATATCATTACCATTATTTACGCCGGAGCGGTA 884
Query 907 GCACAAGGAATATGTACGGTTGGAACGTCTTGGTGCATCAGAAAGAGAGGACCTATCTTT 966
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 885 GCACAAGGAATATGTACGGTGGGAACGTCTTGGTGCATCAGAAAGAGGGGACCTATCTTT 944
Query 967 ACTTCTATATTTACCCCGGTGGGGCTTATATTTGCAACACTATTTGATTTCTTGATCCTT 1026
|||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 945 ACTTCTATTTTTACCCCGGTGGCGCTTATATTCGCAACTCTATTTGATTTCTTGATCCTT 1004
Query 1027 CATCGTCAAATTTTCCTAGGAAGTGTTGTCGGATCTGGGGTTGTAATCTTCGGACTATAC 1086
|| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1005 CACCGTCAAATTTTCCTTGGAAGTGTTATCGGATCTGGGGTAGTAATCTTCGGACTATAC 1064
Query 1087 ATATTCTTGTTGGGAAAAGTCAGGCTAATGAAAGAAGAGTGTGAAAAGAAGTTACCTTGT 1146
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1065 ATATTCTTGTTGGGAAAAGTCAGGCTAATGAAGGAAGAGTGTGAAAAGAAGTTACCTTGT 1124
Query 1147 CGTTTTAATGAAGATGATCAAGAAGAAGATGATGATGAACAATACAAAAAGGGTCATCTT 1206
|||||||||||||| || | || ||||||||||| | |||||||||||||||||||||
Sbjct 1125 CGTTTTAATGAAGAAGA--AGGA-GAAGATGATGA--A-CAATACAAAAAGGGTCATCTT 1178
Query 1207 ATGGTTGTTCCAATGACTCCTTGATAAGATTAGACttttttttttttCTTCTTCTTCACT 1266
||||||||||||||||||||||||| |||||||||||||| || | || | |||
Sbjct 1179 ATGGTTGTTCCAATGACTCCTTGATTTGATTAGACTTTTTTATT---C--CTAC---ACT 1230
Query 1267 TCGTACATTATTTAGTAAAACCATTGACCGGTGAAAATTACATGGACTAGTCTAACAACG 1326
||||||||||||| |||| |||| |||||||||| || ||||||||||||||||||
Sbjct 1231 TCGTACATTATTTTGTAATACCAGTGACCGGTGATCTTT---TGGACTAGTCTAACAACG 1287
Query 1327 GTTCAAAAAACTAGTC 1342
| ||| ||||||||||
Sbjct 1288 GCTCAGAAAACTAGTC 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5