BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01470.1
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943598 jgi|Araly1|943598|scaffold_604142.1 1120 0.0
> Ahg943598 jgi|Araly1|943598|scaffold_604142.1
Length=800
Score = 1120 bits (606), Expect = 0.0
Identities = 709/760 (93%), Gaps = 2/760 (0%)
Strand=Plus/Plus
Query 1 ATGCCTATCAACAGAATTGCGATTGGAACGCCGGGGGAAGCTAGTCGTCCCGATGCGATT 60
||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 21 ATGGCTATCAACAGAATTGCGATTGGAACGCCAGGAGAAGCTAGTCGTCCCGATGCGATT 80
Query 61 AGAGCAGCTTTCGCGGAGTTTTTCTCGATGGTTATATTCGTTTTCGCGGGTCAAGGCTCT 120
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 81 AGAGCGGCTTTCGCGGAGTTTTTCTCCATGGTTATATTCGTTTTCGCGGGTCAAGGCTCT 140
Query 121 GGAATGGCTTATGGAAAACTAACTGGAGATGGTCCAGCCACACCTGCCGGTCTTGTGGCC 180
||||||||||| ||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 141 GGAATGGCTTACGGAAAACTAACTGGAGATGGTCCAGCCACACCTTCCGGGCTCGTGGCC 200
Query 181 GCGTCTTTGTCTCATGCGTTTGCGTTGTTCGTTGCGGTTTCCGTTGGAGCTAACGTTTCA 240
|||||| |||||||||||||||||||||| || |||||||||||||| || ||||| |||
Sbjct 201 GCGTCTCTGTCTCATGCGTTTGCGTTGTTTGTGGCGGTTTCCGTTGGTGCAAACGTCTCA 260
Query 241 GGTGGTCATGTGAA-CCCGGCGGTTACATTTGGGGCTTTTATTGGTGGAAACATAACGTT 299
|| || || ||||| ||| || |||||||| || |||||||| ||||| ||||| || ||
Sbjct 261 GGCGGCCACGTGAATCCC-GCTGTTACATTCGGAGCTTTTATAGGTGGTAACATTACATT 319
Query 300 GTTGAGAGCTATTCTTTATTGGATCGCTCAATTACTCGGAGCAGTCGTAGCTTGCTTGTT 359
|||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 320 GTTGAGAGCTGTTCTATATTGGATAGCTCAATTACTCGGAGCAGTCGTAGCTTGCTTGTT 379
Query 360 GCTCAAGGTAAGCACTGGCGGGATGGAAACGGCTGCGTTTTCGCTATCATATGGAGTGAC 419
||||||||||||||| |||||||||||||| || ||||||||||| || ||||||||||
Sbjct 380 GCTCAAGGTAAGCACAGGCGGGATGGAAACAGCAGCGTTTTCGCTCTCCCATGGAGTGAC 439
Query 420 GCCCTGGAACGCAGTCGTTTTCGAGATTGTGATGACGTTTGGGTTAGTTTACACGGTTTA 479
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 440 ACCGTGGAATGCAGTCGTATTCGAGATTGTGATGACGTTTGGGTTAGTTTACACGGTTTA 499
Query 480 CGCTACTGCCGTGGATCCCAAGAAAGGTGATATTGGAATCATTGCGCCTTTGGCGATTGG 539
|||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 500 CGCTACTGCCGTGGATCCCAAGAAAGGTGATATTGGAATCGTTGCTCCTTTAGCGATTGG 559
Query 540 GTTAATCGTTGGAGCTAACATTCTGGTTGGTGGTGCTTTCGACGGTGCATCGATGAACCC 599
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 560 GTTAATCGTTGGAGCTAACATTCTGGTTGGTGGTGCGTTCGATGGTGCATCGATGAACCC 619
Query 600 CGCGGTTTCATTTGGTCCGGCCGTGGTTAGCTGGATTTGGACGAATCATTGGGTCTATTG 659
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 620 TGCGGTTTCCTTTGGTCCGGCCGTGGTTAGCTGGACTTGGACGAATCATTGGGTCTACTG 679
Query 660 GGTTGGTCCTTTTATCGGTGCAGCCATTGCAGCTATTGTTTATGATACTATCTTTATCGG 719
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 680 GGTTGGTCCTTTTATCGGTGCAGCCATTGCAGCTACTGTTTATGATACTATCTTTATCGG 739
Query 720 TAGTAATGGACATGAACCACTTCCTTCTAATGATTTCTAA 759
||||||||| ||||||||||||||||||||||||||||||
Sbjct 740 TAGTAATGGGCATGAACCACTTCCTTCTAATGATTTCTAA 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27982221078
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5