BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01480.1
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490426 jgi|Araly1|490426|fgenesh2_kg.6__3560__AT4G01480.1 1548 0.0
Ahg909874 jgi|Araly1|909874|Al_scaffold_0001_128 680 0.0
> Ahg490426 jgi|Araly1|490426|fgenesh2_kg.6__3560__AT4G01480.1
Length=1042
Score = 1548 bits (838), Expect = 0.0
Identities = 985/1050 (94%), Gaps = 33/1050 (3%)
Strand=Plus/Plus
Query 1 ACGCGCTTTACTGTTTTCTCATCATC--GTCACTTTTCTTTCTCCACACTTTCCGCAAGA 58
|||||||||||||||||||| || || |||||||||||||||||| |||| ||||||||
Sbjct 1 ACGCGCTTTACTGTTTTCTCTTCCTCTTGTCACTTTTCTTTCTCCATACTTCCCGCAAGA 60
Query 59 TTGTTCTGTTC--TTC---AAACGATTCTAAGATGAATGG---AGAAGAAGTGAAAACGA 110
||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TTGTTCTGTTCTGTTCTTGAAACGATTCTAAGATGAATGGACAAGAAGAAGTGAAAACGA 120
Query 111 GTCAACCTCAGAAGAAGCTTCAGAACCCTACTCCACGTTTAAACGAGAGGATTCTCTCAT 170
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCAATCTCAGAAGAAGCTTCAGAACCCTACTCCACGTTTAAACGAGAGGATTCTCTCAT 180
Query 171 CTTTGTCTAAGAGATCGGTTGCTGCACATCCATGGCATGATCTTGAAATCGGACCTGGAG 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTGTCTAAGAGATCGGTTGCTGCACATCCATGGCATGATCTTGAAATCGGACCTGGAG 240
Query 231 CTCCAGTGATTTTCAATGTGGTTATTGAGATCTCAAAGGGGAGCAAAGTCAAATATGAAC 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCCAGTGATTTTCAATGTGGTTATTGAGATCTCAAAGGGGAGCAAAGTCAAATATGAAC 300
Query 291 TTGACaaaaaaaCAGGTCTCATCAAGGTTGATAGGATTCTTTATTCTTCGGTTGTGTATC 350
||||||||||||| || ||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 301 TTGACAAAAAAACTGGACTCATCAAGGTTGATCGGATTCTGTATTCGTCGGTTGTGTATC 360
Query 351 CTCACAACTACGGGTTTGTCCCACGCACACTATGTGAAGACAATGACCCTATAGATGTTT 410
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCATAACTACGGTTTTGTCCCCCGCACACTATGTGAAGACAATGACCCTATAGATGTTT 420
Query 411 TAGTTATCATGCAGGAGCCTGTGCTTCCGGGTTGTTTTCTTCGCGCCCGAGCTATTGGTT 470
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 TAGTTATCATGCAGGAGCCTGTGCTTCCGGGTTGCTTTCTTCGCGCCCGAGCTATTGGTT 480
Query 471 TAATGCCTATGATTGACCAGGGTGAAAAAGATGACAAGATCATTGCAGTTTGTGTTGATG 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TAATGCCTATGATTGACCAGGGTGAAAAAGATGACAAGATCATTGCAGTTTGTGTTGATG 540
Query 531 ATCCTGAGTATAAGCACATCACTAACATCAATGAACTTCCTCCTCATCGTCTTTCTGAAA 590
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 ATCCTGAGTATAAGCATATCACTAACATCAATGAACTTCCTCCTCATCGTCTCTCTGAAA 600
Query 591 TCCGTCGATTCTTTGAAGACTACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAATGATT 650
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 601 TCCGTCGATTCTTTGAAGATTACAAGAAGAATGAGAACAAAGAAGTTGCAGTGAATGATT 660
Query 651 TTCTACAACCTGGTCCTGCTATTGAAGCCATTCAGTACTCAATGGATCTTTACGCTGAGT 710
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 661 TTCTACAACCTGGTCCTGCTATTGAAGCCATTCAATACTCAATGGACCTTTACGCTGAGT 720
Query 711 ACATTCTTCACACCCTGAGGAGATAGATGAAAAGAAG-ACTTCTTCAAGAACATTCCTGC 769
|||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 721 ACATTCTTCACACCCTGAGGAGATAGATAAAAA-AAGGACTTCTTCAAGAACATTCCTGC 779
Query 770 CAATTTTTGGGTCTGCAATCTCAGATTCTGTTGCAGTGAATATGCAAAAGAACAAGAATT 829
||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct 780 CAATTTTTGC-TCTGCAGTCTCAGATTTTGTTGCAGTGAATATGCAAAAGAACAAGAACT 838
Query 830 TGTCTTATATTTGGAttttttttGAA-TAAGCACGTGTCTCATATTTGGCTTTGACGCTT 888
||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||| ||
Sbjct 839 TGTCTGATATTTGGATTTTT---GAAATAAGCACGTGTCTCATATTTGGCTTTAACGATT 895
Query 889 TCCTTTttgttgttgttgttgttg-ttgtCTTCTGGGGATGTTTTGTCTGAACATTAAGA 947
|| |||| |||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 896 TC-TTTT-GTTGTTGTTGTTGTTGATT-TCTTCTGGGGATGTTTTGTCTGAACATTGAGA 952
Query 948 GTTT--------GTATTTGTAACACTGCCTTTGGATCttttttt-AATAAT--TT-CAAG 995
|||| ||||||||||||||| |||||||||||||||| |||||| || |||
Sbjct 953 GTTTTCTCACTTGTATTTGTAACACTGTCTTTGGATCTTTTTTTTAATAATAATTTCAAT 1012
Query 996 CTTCGATTTGGTTCCAATGAAACCAGACTT 1025
||||||||||||||||||||||||||||||
Sbjct 1013 CTTCGATTTGGTTCCAATGAAACCAGACTT 1042
> Ahg909874 jgi|Araly1|909874|Al_scaffold_0001_128
Length=639
Score = 680 bits (368), Expect = 0.0
Identities = 521/595 (88%), Gaps = 10/595 (2%)
Strand=Plus/Plus
Query 141 CTCCACGT-TTAAACGAGAGGATTCTCTCATCTTTGTCTAAG-AGATCGGTTGCTGCACA 198
|||| ||| || |||||||||||||||||||| ||||| ||| ||||| || ||||||||
Sbjct 44 CTCCTCGTCTT-AACGAGAGGATTCTCTCATCCTTGTC-AAGAAGATCCGTAGCTGCACA 101
Query 199 TCCATGGCATGATCTTGAAATCGGACCTGGAGCTCCAGTGATTTTCAATGTGGTTATTGA 258
||| |||||||||||||| || ||||||||||||||| |||||||||||||||| ||||
Sbjct 102 TCCCTGGCATGATCTTGAGATTGGACCTGGAGCTCCACAGATTTTCAATGTGGTTGTTGA 161
Query 259 GATCTC-AAAGGGGAGCAAAGTCAAATATGAACTTGACaaaaaaaCAGGTCTCATCAAGG 317
|||| | ||| || ||||| |||||||| || ||||||||||| ||||| ||||||||||
Sbjct 162 GATCACTAAA-GGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGG 220
Query 318 TTGATAGGATTCTTTATTCTTCGGTTGTGTATCCTCACAACTACGGGTTTGTCCCACGCA 377
||||| | ||||| || || || |||||||| |||||||||||||| ||||| || || |
Sbjct 221 TTGATCGTATTCTGTACTCATCAGTTGTGTACCCTCACAACTACGGTTTTGTTCCTCGTA 280
Query 378 CACTATGTGAAGACAATGACCCTATAGATGTTTTAGTTATCATGCAGGAGCCTGTGCTTC 437
|| | ||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||
Sbjct 281 CATTGTGTGAAGACAATGACCCCATTGATGTATTAGTCATCATGCAGGAACCTGTGCTTC 340
Query 438 CGGGTTGTTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAGGGTGAAA 497
| ||||||||||| || ||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 341 CTGGTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGGGTGAAA 400
Query 498 AAGATGACAAGATCATTGCAGTTTGTGTTGATGATCCTGAGTATAAGCAC-ATCACTAAC 556
||||||||||||||||||| || ||||||||||||||||| |||||||| | |||| ||
Sbjct 401 AAGATGACAAGATCATTGCGGTCTGTGTTGATGATCCTGAATATAAGCATTA-CACTGAC 459
Query 557 ATCAATGAACTTCCTCCTCATCGTCTTTCTGAAATCCGTCGATTCTTTGAAGACTACAAG 616
||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||||||
Sbjct 460 ATCAAAGAACTTCCTCCTCACCGTCTCTCTGAAATCCGCCGTTTCTTTGAAGACTACAAG 519
Query 617 AAGAATGAGAACAAGGAAGTTGCAGTGAATGATTTTCTACAACCTG-GTCCTGCTATTGA 675
|| || |||||||||||||||||||||||||||||||| | | ||| ||| |||| ||||
Sbjct 520 AAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGAGTC-TGCTGTTGA 578
Query 676 AGCCATTCAGTACTCAATGGATCTTTACGCTGAGTACATTCTTCACACCCTGAGG 730
||| || |||||||||||||| || || ||||| ||||||||||| |||||||||
Sbjct 579 AGCTATCCAGTACTCAATGGACCTCTATGCTGAATACATTCTTCATACCCTGAGG 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38427900336
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5