BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01500.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943596 jgi|Araly1|943596|scaffold_604140.1 1572 0.0
Ahg470180 jgi|Araly1|470180|fgenesh2_kg.1__134__AT1G01030.1 230 3e-59
> Ahg943596 jgi|Araly1|943596|scaffold_604140.1
Length=1039
Score = 1572 bits (851), Expect = 0.0
Identities = 982/1044 (94%), Gaps = 13/1044 (1%)
Strand=Plus/Plus
Query 328 GCTTGATACTTTTGATGAATATCTCAACAATGAA-TCTTGACCAAGAACTCGCCGAGATC 386
||||||||||| |||||||||| ||||| |||| || ||| |||||||||||||| |||
Sbjct 1 GCTTGATACTTATGATGAATATGTCAACGCTGAATTC-TGATCAAGAACTCGCCGATATC 59
Query 387 AGAGCTAGCAGTTCCGACCACACCAATTACTTCTACAGCTCGGAGAGGAGAGAGCACATG 446
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 60 GGAGCTAGCAGTTCCGACAACACCAATTACTTCTACAGCTCGGAGAGAAGAGAGCACATG 119
Query 447 TTCGACAAAGTGTTGACACCAAGTGACGTCGGTAAACTAAACCGGCTCGTGATTCCAAAG 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCGACAAAGTGTTGACACCAAGTGACGTCGGTAAACTAAACCGGCTCGTGATTCCAAAG 179
Query 507 CAACATGCAGAGAACTTCTTCCCTTTAGAGGACAATCAAAACGGCACAGTGTTGGATTTC 566
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 CAACATGCAGAGAACTACTTCCCTTTAGAGGGCAATCAAAACGGCACAGTGTTGGATTTC 239
Query 567 CAAGACAAAAACGGCAAGATGTGGAGGTTTCGTTACTCGTATTGGAACAGTAGCCAAAGC 626
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAGACAGAAACGGCAAGATGTGGAGGTTTCGTTACTCGTATTGGAACAGTAGCCAAAGC 299
Query 627 TACGTGATGACCAAAGGATGGAGCCGTTTCGTCAAGGAGAAGAAACTCTTCGCCGGAGAC 686
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 300 TACGTGATGACCAAAGGATGGAGCCGTTTCGTTAAAGAGAAGAAACTCTTCGCCGGAGAC 359
Query 687 ACCGTCTCTTTCTACCGTGGCTACATCCCTGACGATAACGCACAACCGGAGAGACGACGG 746
||||| |||||| ||||||||| |||||| ||||||||||||| |||||||||||| |||
Sbjct 360 ACCGTGTCTTTCCACCGTGGCTTCATCCCCGACGATAACGCACCACCGGAGAGACGCCGG 419
Query 747 AAAATAATGTTCATCGATTGGAGGCCTAGAGCCGAGATAAACTTCGTACACAACATTAAC 806
|||||||||||||| |||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 420 AAAATAATGTTCATTGATTGGAGGCATAGAGCCGAGATAAACCTCGTACACAACTTTAAC 479
Query 807 AATCATAACTTCGTTTTCGGGTCTCCGACATATCCAACGGCTAGGTTTTATCCGGTGACG 866
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAGCATAACTTCATTTTCGGGTCTCCGACATATCCAACGGCTAGGTTTTATCCGGTGACG 539
Query 867 CCGGAATATTCCATGCCAT---ACCGGAGTTTTCCACCGTTTTATCAGAACCAATTTCAA 923
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 540 CCGGAATATTCCATGCCAAGCCACCGGAGTTTTCCACCGTTTTATCATAACCAATTTCAA 599
Query 924 GAACGGGAATATTTAGGGTATGGTTATGGTAGAGTTGTTAATGGTAATGGAGTGCGTTAC 983
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||
Sbjct 600 GAACGGGAATATTTAGGGTATGGTTATGGTAGAATTGTGAATGGTAATGGAGCGCGTTAC 659
Query 984 TACGCAGGATCACCGTTGGATCAACATCATCAGTGGAATCTTGGTCGATCTGAGCCGTTG 1043
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 660 TACGCAGGATCACCGTTGGATCA---TCATCAGTGGAATCTTGGTAGATCTGAGCCGTTG 716
Query 1044 GTTTATGACTCGGTTCCAGTTTTTCCAGCGGGGAGGGTACCTCCGTCGGCGCCTCCTCAG 1103
|| |||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||
Sbjct 717 GTCTATGACTCAGTTCCTGTTTTTCCAGCGGGGAGGGTACTTCCATCGGCGCCTCCTCAG 776
Query 1104 CCGTCGACGACGAAGAAGCTGAGGCTGTTTGGGGTTGACGTGGAAGAGTCTTCATCTTCA 1163
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 777 CCGTCGACGACGAAGAAGCTGAGGCTGTTTGGGGTTGACGTGGAGGAGTCTACATCTTCA 836
Query 1164 GGGGATACACGTGGCGAAATGGGAGTAGCAGGGTACTCTTCCTCGTCTCCGGTTGTGATC 1223
||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 837 GGGGAGACACGTGGCGAAATGGGAGTTCCAGGGTACTCTTCGTCGTCTCCGGTTGTGATC 896
Query 1224 AGAGACGATGATCAATCATTTTGGAGGTCGCCACGTGGCGAAATGG---CATCGTCTTCT 1280
||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct 897 AGAGACGATGATCAATCGTTTGGGAGGTCGCCACGTGGCGAAATGGGTGCATCGTCTTCT 956
Query 1281 TCGGCTATGCAGCTAAGTGATGATGAAGAATAT-AAGAGGAAAGGGAAATCTTTAGAGCT 1339
|||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct 957 TCGGCTATGCAGCTAAGTGATGATGAAGAA-ATTAAGAGGAAAGGGAAATCTATAGAGTT 1015
Query 1340 TTGAAGATAGAATAAAATAAGAAC 1363
|||||||||||| |||||||||||
Sbjct 1016 TTGAAGATAGAAAAAAATAAGAAC 1039
> Ahg470180 jgi|Araly1|470180|fgenesh2_kg.1__134__AT1G01030.1
Length=1869
Score = 230 bits (124), Expect = 3e-59
Identities = 225/272 (83%), Gaps = 14/272 (5%)
Strand=Plus/Plus
Query 437 AGAGCACATGTTCGACAAAGTGTTGACACCAAGTGACGTCGGTAAACTAAACCGGCTCGT 496
||| |||||||||||||||||| | |||||||| |||||||| ||||| ||| | || ||
Sbjct 758 AGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTCGGAAAACTCAACAGACTTGT 817
Query 497 GATTCC-AAAGCAACATGCAGAGAACT-TCTTCCCTTTAGA------GGACAATCAAAAC 548
||| || ||| ||||| || |||| | | ||||| |||| |||| ||||||
Sbjct 818 GATCCCTAAA-CAACACGCTGAGAGGTAT-TTCCCACTAGACTCCTCAAACAACCAAAAC 875
Query 549 GGCACAG-TGTTGGATTTCCAAGACAAAAACGGCAAGATGTGGAGGTTTCGTTACTCGTA 607
||||| | ||||| | |||||||||| |||||||||||||||||| || |||||||||||
Sbjct 876 GGCAC-GCTGTTGAACTTCCAAGACAGAAACGGCAAGATGTGGAGATTCCGTTACTCGTA 934
Query 608 TTGGAACAGTAGCCAAAGCTACGTGATGACCAAAGGATGGAGCCGTTTCGTCAAGGAGAA 667
||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 935 TTGGAACTCTAGCCAGAGCTACGTGATGACCAAAGGATGGAGCCGTTTCGTCAAAGAGAA 994
Query 668 GAAA-CTCTTCGCCGGAGACACCGTCTCTTTC 698
||| ||| ||| ||||||| |||||||||
Sbjct 995 -AAAGCTCGACGCAGGAGACATTGTCTCTTTC 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5