BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01510.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490425 jgi|Araly1|490425|fgenesh2_kg.6__3559__AT4G01510.1 1138 0.0
Ahg470181 jgi|Araly1|470181|fgenesh2_kg.1__135__AT1G01020.1 377 6e-104
Ahg351911 jgi|Araly1|351911|fgenesh1_pg.C_scaffold_6002504 130 2e-29
> Ahg490425 jgi|Araly1|490425|fgenesh2_kg.6__3559__AT4G01510.1
Length=808
Score = 1138 bits (616), Expect = 0.0
Identities = 739/796 (93%), Gaps = 17/796 (2%)
Strand=Plus/Plus
Query 17 AGAGAGATGGCGAGAGAGAAGAAGACGTGTGTAGAGTGTGGGCACAAGGTTAAATCTTTG 76
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 1 AGAGAGATGGCGAGAGAGAAGAAGACGTGTGTAGAGTGTGGGCATAAGGTTAAGTCCTTG 60
Query 77 TTCATACAATACTCTCCTGGAAATTTTCGTCTCATGAAATGCGAGAATTGCGAAGAAGTA 136
||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 61 TTCATTCAATACTCTCCTGGCAATTTTCGCCTCATGAAATGCGAGAATTGCGAGGAAGTA 120
Query 137 GCAGACGAATATGTCGAGTGTGAGCTATTGATTATTTTCATCGACTTGATTCTTCACAAA 196
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCAGACGAATACGTCGAGTGTGAGCTATTGATTATTTTCATCGACTTGATTCTTCACAAA 180
Query 197 ACAAAGGCTTATAGACACTTACTCTACAATGTTG-TTAATCAAGAATCTGCAAATGTTCA 255
||||||||||||||||||||||| ||||||| || ||||||||||||||| ||| ||||
Sbjct 181 ACAAAGGCTTATAGACACTTACTTTACAATG-TGTTTAATCAAGAATCTGTTAATATTCA 239
Query 256 GCATCTATTATGGAAATTGGTCTTGGCTTATCTTCTTCTAGATACTTATAGAAGCTTGCT 315
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCATCTGTTGTGGAAATTGGTCTTGGCTTATCTTCTTCTAGATACTTATAGAAGCTTGCT 299
Query 316 ACTGAGAAGAACCAATGACGGATCAAATGTGTCTATGAGCTTTCTTTTTGAATCTCTAGA 375
|||| |||||||||||||| |||||||||||| ||||||||| || |||||||||||||
Sbjct 300 ACTGCGAAGAACCAATGACCAATCAAATGTGTCGATGAGCTTTGTTCTTGAATCTCTAGA 359
Query 376 GGTTCTGGTCAATGTACTATCTGCGAATTTCGCATTTGTTTTCTCATTTGCATTTGCTGC 435
|||||||||||||||||||||||||||||| || |||||||| ||||||||| |||| ||
Sbjct 360 GGTTCTGGTCAATGTACTATCTGCGAATTTTGCTTTTGTTTTATCATTTGCACTTGCGGC 419
Query 436 TAAGTTGATGCTGGTTATGCCAAGAGGGAAAGAGATTCTTTTAACGATCTTAATCTCGAG 495
|||| |||||||||||||| ||||||| |||||||||||||| | | |||||||||||
Sbjct 420 TAAGATGATGCTGGTTATGTCAAGAGGAAAAGAGATTCTTTTGGGGGTATTAATCTCGAG 479
Query 496 TTACGTCAAGATCTTTCTATTTGCTATGCCGGTCTGGGAATTCCCAGTTTCTGTGATCTT 555
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TTACGTCAAGATCTTTCTATTTGCTATGCCGGTCTGGGAATTCCCGGTTTCTGTGATCTT 539
Query 556 CATCGTAGATATGCTCGTTTTAACCTCAAACGCAGTTGCTCTTAAAGTGATGACTGAATC 615
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 CATCGTAGATATGCTCGTTTTAACATCAAACGCAGTTGCTCTTAAAGTGATGACTGAATC 599
Query 616 AGCAACGAGCAGATGCTTAGCAGTGTGTTTCATTGCACACTCAATTAGATTCTTGGTGGA 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGCAACGAGCAGATGCTTAGCAGTGTGTTTCATTGCACACTCAATTAGATTCTTGGTGGA 659
Query 676 TCAGATCTCTGGACACTTAGGATCTGTCATGTAATCTTCTCTTGCAAGGAACTTGTGATC 735
|||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 660 TCAGATCTCTGGACACTTAGGATCTGTCTTGTAATCT--------AA----CTTGTGATC 707
Query 736 TCATAATAttttttttAGGGTCGTTAAACTCTCTTGTCTAAATCACTTGTGATAATATGT 795
||||||| |||||| |||||| ||||||||| ||||||||||||| | |||||||||||
Sbjct 708 TCATAAT-TTTTTT--AGGGTCTTTAAACTCTTTTGTCTAAATCACCTATGATAATATGT 764
Query 796 TTAGAAAAATAAATGT 811
||||||||||||||||
Sbjct 765 TTAGAAAAATAAATGT 780
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 827 TTTTTGTTCAATCCAACTCCTTTTGGGTG 855
|||||||||||||||||||||||||||||
Sbjct 780 TTTTTGTTCAATCCAACTCCTTTTGGGTG 808
> Ahg470181 jgi|Araly1|470181|fgenesh2_kg.1__135__AT1G01020.1
Length=767
Score = 377 bits (204), Expect = 6e-104
Identities = 504/643 (78%), Gaps = 43/643 (7%)
Strand=Plus/Plus
Query 64 GGTTAAATCTTTGTTCATACAATACTCTCCTGGAAATTTTCGTCTCATGAAATGC-GAGA 122
|||||| || |||||||| ||||||||||| || || ||||||||||||||||| || |
Sbjct 57 GGTTAAGTCATTGTTCATTCAATACTCTCCGGGTAACATTCGTCTCATGAAATGCGGA-A 115
Query 123 ATTGCGAA-GAAGTAGCAGACGAATATGTCGAGTGTG-A-GCTATTGATTATTTTCATCG 179
||||| || ||||||||||||||||| ||||||||| | || | |||||||||||||||
Sbjct 116 ATTGC-AAGGAAGTAGCAGACGAATACATCGAGTGTGAACGC-A-TGATTATTTTCATCG 172
Query 180 ACTTGATTCTTCACAAAACAAAGGCTTATAGACACTTACTCTACAATGTTGTTAATCAAG 239
| || || ||||| | | |||||| |||||||||| | |||||||||| |||||| ||
Sbjct 173 ATTTAATCCTTCATAGACCAAAGGTTTATAGACACGTCCTCTACAATGCAATTAATCCAG 232
Query 240 AATCTG-CAAATGTTCAGCATCTATTATGGAAATTGGTCTTGGCT-TATCTTCTTCTAGA 297
|| ||| | ||| ||||||| | || ||||| |||||||| | | ||||||||||||||
Sbjct 233 AAACTGTC-AATACTCAGCATTTGTTGTGGAAGTTGGTCTTCG-TGTATCTTCTTCTAGA 290
Query 298 -TACTTATAGAAGCTTGCTACTGAGAAGAACCAATGACGGATCAAA-TGTGTCT-ATGAG 354
| |||||||||||||||||||||||||||| |||||| ||| | | | ||| || ||
Sbjct 291 CT-CTTATAGAAGCTTGCTACTGAGAAGAACTGATGACGAATCGAGCTTT-TCTCAT-AG 347
Query 355 CTTTCTTTTTGA-ATCTCTAGAGGTTCTGGTCAATGTACT-ATCTGCGAATT-TCGCATT 411
|| || || | |||| || ||||||| || ||| || |||||| || | |||||
Sbjct 348 CTCGGTTCTT-ATATCTATAAAGGTTCTAATCGGTGT-CTTATCTGCAAACGCT-GCATT 404
Query 412 TGTTTTCTCATTT-GC-ATTTGCTGCTAAG--TT-GATGC-TG--GTTATGCCAAGAGGG 463
| | ||||| ||| || ||| || || ||| || | | || ||| | ||| ||||
Sbjct 405 TATCTTCTC-TTTCGCCATT-GCGGCCAAGGGTTTGCTAAATGAAGTT-T-CCA-GAGG- 458
Query 464 AA-AGAGATTCTTTTAACGATCTTAATCTCGAGTTACGTCAAGATCTTTCTATTTGCTAT 522
|| ||||||| | || ||| | ||||| |||||| ||||||| ||||| ||||| ||
Sbjct 459 AAGAGAGATTATGTTGGGGATATGCATCTCTAGTTACTTCAAGATATTTCTGTTTGCGAT 518
Query 523 GCCGGTCTGGGAATTCCCAGTTTCTGTGATCTTCATCGTAGATATGCTCGTTTTAACCTC 582
| ||| |||||||||||| | || ||||||||||| || ||||| || || ||||| ||
Sbjct 519 GTTGGTATGGGAATTCCCAATGTCAGTGATCTTCATTGTCGATATACTTGTCTTAACATC 578
Query 583 AAACGC-AGTTGCTCTTAAAGTGATGACTGAATCAGCAACGA-GCAGATGCTTAGCAGTG 640
|||| | | | |||||||||||||||||||||||| ||| || | |||||| |||| ||
Sbjct 579 AAACTCCA-TGGCTCTTAAAGTGATGACTGAATCAACAATGACG-AGATGCATAGCCGTA 636
Query 641 TGTTTCATTGCACACTCAATTAGATTCTTGGTGGATCAGATCT 683
|| || || || |||| ||||||||||||||| ||||||||
Sbjct 637 TGCTTAATCGCGCACTTGGTTAGATTCTTGGTGGGTCAGATCT 679
> Ahg351911 jgi|Araly1|351911|fgenesh1_pg.C_scaffold_6002504
Length=474
Score = 130 bits (70), Expect = 2e-29
Identities = 77/80 (96%), Gaps = 2/80 (3%)
Strand=Plus/Plus
Query 167 ATTATTTTCATCGACTTGATTCTTCACAAAACAAAGGCTTATAGACACTTACTCTACAAT 226
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 10 ATTATTTTCATCGACTTGATTCTTCACAAAACAAAGGCTTATAGACACATACTCTACAAT 69
Query 227 GTTGTT-AATCAAGAATCTG 245
|| ||| |||||||||||||
Sbjct 70 GT-GTTTAATCAAGAATCTG 88
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5