BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01550.1
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327634 jgi|Araly1|327634|fgenesh1_pm.C_scaffold_6002854 1572 0.0
> Ahg327634 jgi|Araly1|327634|fgenesh1_pm.C_scaffold_6002854
Length=1236
Score = 1572 bits (851), Expect = 0.0
Identities = 956/1007 (95%), Gaps = 6/1007 (1%)
Strand=Plus/Plus
Query 187 ATGGTGAAAGATCTGGTTGGGTATAGATTTTATCCAACGGGAGAGGAATTGATAAACCAT 246
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAAAGATCTGGTAGGGTATAGATTTTATCCAACGGGAGAGGAATTGATAAACCAC 60
Query 247 TATCTAAAGAACAAAATTTTGGGTAAGACTTGGCTCGTCGACGAAGCCATTAGCGAGATC 306
|| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TACCTTAAGAACAAAATTCTGGGTAAGACTTGGCTCGTCGACGAAGCCATTAGCGAGATC 120
Query 307 AACATCTGTAGTTACGACCCAATTTACTTGCCTTCTTTATCGAAGATAAAATCGGATGAT 366
|||||||||||||||||||| |||||||||||||| ||||||||| | ||||| || |||
Sbjct 121 AACATCTGTAGTTACGACCCTATTTACTTGCCTTCGTTATCGAAGCTCAAATCTGACGAT 180
Query 367 CCTGTGTGGTACTTCTTCTGTCCAAAGGAGTATACTTCTGCGAAGAAGAAGGTAACGAAG 426
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CCGGTTTGGTACTTCTTCTGTCCAAAGGAGTACACTTCTGCGAAGAAGAAGGTAACGAAG 240
Query 427 AGGACTACAAGTTCAGGGTATTGGAAAGCTACTGGTGTTGATAGGAAAATCAAAGATAAG 486
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 AGGACTACAAGTTCTGGGTATTGGAAAGCTACTGGTGTTGATCGGAAAATCAAAGATAAG 300
Query 487 AGAGGTAATCGCGGCGAGATTGGGATAAAGAAGACGCTTGTGTATTATGAAGGTAGAGTT 546
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 301 AGAGGTAATCGCGGCGAGATCGGGATTAAGAAGACGCTTGTGTATTATGAAGGTAGAGTT 360
Query 547 CCTAAAGGTGTTTGGACTCCTTGGGTTATGCATGAGTATCACATCACTTGTTTGCCTCAA 606
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTAAAGGAGTTTGGACTCCTTGGGTTATGCATGAGTATCACATCACTTGTTTGCCTCAA 420
Query 607 GATCAGAGGAACTATGTTATCTGCCAAGTGATGTATAAGGGTGAAGATGGAGACGTCCCA 666
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GATCAGAGGAACTATGTTATCTGCCAAGTAATGTATAAGGGTGAAGATGGAGACGTCCCA 480
Query 667 TCTGGTGGTAACAACTCGAGTGAGCCGAGTCAATCTTTGGTCTCTGATTCGAATACTGTC 726
|| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 TCAGGTGGTAATAACTCGAGTGAGCCGAGTCAATCTATGGTCTCTGATTCGAATACTGTC 540
Query 727 AGAGCTACGAGTCCCACAGCGCTTGAGTTTGAGAAGCCAGGTCAAGAAAATTTCTTTGGT 786
|||| |||| | ||||||||| ||| |||||| ||||||||||||||||||||||||||
Sbjct 541 AGAGAGACGATTACCACAGCGCCTGAATTTGAGCAGCCAGGTCAAGAAAATTTCTTTGGT 600
Query 787 ATGTCTGTGGATGATTTGGGGACTCCAAAGAAT--G----AACAAGAAGATTTCTCTTTG 840
|||||||||||||||||| | ||||||| |||| | ||||||||||||||||| ||
Sbjct 601 ATGTCTGTGGATGATTTGAGAACTCCAATGAATGAGCAAAAACAAGAAGATTTCTCTCTG 660
Query 841 TGGGATGTACTGGATCCAGACATGTTATTCAGTGACAATAACAATCCTACTGTGCATCCA 900
||||||||| ||||||||||||||||||||||||| || |||||| |||||||||| |||
Sbjct 661 TGGGATGTATTGGATCCAGACATGTTATTCAGTGATAACAACAATTCTACTGTGCAGCCA 720
Query 901 CAAGCTCCTCACTTAACCCCGAATGATGATGAGTTTCTCGGTGGATTGAGGCATGTTAAC 960
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAAGCTCCTCACTTAGCCCCGAATGATGATGAGTTTCTCGGTGGATTGAGGCATGTTAAC 780
Query 961 CGAGAGCAGGTTGAATATTTGTTTGCCAATGAAGATTTCATATCCAGACCAACCTTATCT 1020
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 CGAGAGCAGGTTGAATATTTGTTTGCCAATGAAGATTTAATATCCAGACCAACCTTATCT 840
Query 1021 ATGACCGAGAACCGCAACGATCACAGGCCAAAGAAGGCTTTGTCAGGGATTATTGTTGAT 1080
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 ATGACAGAGAACCGCAACGATCACAGGCCAAAGAAAGCTTTGTCAGGGATTATTGTTGAT 900
Query 1081 TATAGCAGTGATAGTAATAGTGATGCTGAATCGATATCTGCAACGAGTTACCAAGGAACA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TATAGCAGTGATAGTAATAGTGATGCTGAATCGATATCTGCAACGAGTTACCAAGGAACA 960
Query 1141 TCAAGTCCAGGTGATGATAGTGTTGGTAGTTCGAATAGACAATTTCT 1187
|||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 961 TCAAGTCCAGGTGATGATAGTGTTGGTAGTTCAAATAGACACTTTCT 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64639145765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5