BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01560.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943587 jgi|Araly1|943587|scaffold_604131.1 1637 0.0
> Ahg943587 jgi|Araly1|943587|scaffold_604131.1
Length=1087
Score = 1637 bits (886), Expect = 0.0
Identities = 1025/1090 (94%), Gaps = 17/1090 (2%)
Strand=Plus/Plus
Query 50 CTTCGTTCGCCGTCCGTCGTAAAAATGGGGTTCAAGAGGAAGAAAGATGATGGTGATGGT 109
||||||||||||| ||||||||||||||| |||||||||||||| | |||||||| |||
Sbjct 1 CTTCGTTCGCCGT-CGTCGTAAAAATGGGTTTCAAGAGGAAGAAGGGCGATGGTGACGGT 59
Query 110 GAGGAAATGGAATCTGATGTTCGTGGAAAGTCTACTTTCAGTGGGGGTGAGAAGAGGAAT 169
|||||||||||||| || | |||||||||||||| ||||| |||| ||||||||||| |
Sbjct 60 GAGGAAATGGAATCAGAAGGTCGTGGAAAGTCTAGTTTCAATGGGACTGAGAAGAGGAGT 119
Query 170 GTGATACTTCCTTCGATGATTAAGAACAAAGATAAGAGATCAAAAGTGTATGCGAAGCAG 229
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 120 GTGATACTTCCTTCGATGATTAAGAACAAGGATAAGAGATCTAAAGTGTATGCGAAGCAA 179
Query 230 AAGCATGAGAAGAAATTGGAGAAGCAGAAGAAGATTAGAGCTCGTGATGCTGCTGAGAAA 289
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 AAGCATGAGAAGAAAGTGGAGAAGCAGAAGAAGATTAGAGCTCGTGACGCTGCTGAGAAA 239
Query 290 CGAGCTTTAGAGCTTGGAGAAGAGCCTCCACAAAAGATGATTCCGAAGACGATTGAGAAT 349
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGAGCTCTAGAGCTTGGAGAAGAGCCTCCACAAAAGATGATTCCGAAGACGATTGAGAAT 299
Query 350 ACAAGAGAATCTGATGAAACTGTTTGCAGACCTGACGATGAAGAATTGTTTGCGGATATT 409
|| |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 300 ACCAGAGAAGCTGATGAAACTGTTTGCCGACCTGACGATGAAGAATTGTTTGCTGATATT 359
Query 410 GATGCTGATGAGTTTAATCCAGTTCTGAGACGTGAGATTGCACCTAAGGTCTTGCTCACA 469
||||||||||||||||||||||| ||||||||||||||| | |||||| ||||| |||||
Sbjct 360 GATGCTGATGAGTTTAATCCAGTGCTGAGACGTGAGATTACTCCTAAGATCTTGATCACA 419
Query 470 ACATGTCGTTTCAATTCCACTAGAGGACCTGC-TTTAATATCTGAGTTGCTTTCGGTGAT 528
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 420 ACTTGTCGTTTCAATTCCACTAGAGGACCTGCGTTT-ATATCTGAGTTGCTTTCGGTGAT 478
Query 529 ACCAAACTCTCATTATCA-AAAGAGAGGAACCTATGATTTGAAGAAGATTGTAGAATACG 587
|||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 479 ACCAAACTCTCATTATCAGAAA-AGAGGAACTTATGATTTGAAAAAGATTGTAGAATACG 537
Query 588 CAACGAAGAAAGATTTTACATCTCTTATTGTTGTTCATACAAATCGTAGAGAACCTGATG 647
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 538 CAACGAAGAAAGATTTTACATCTCTTATTGTCGTCCATACGAATCGTAGAGAACCTGATG 597
Query 648 CGCTTCTTATCATCGGTTTGCCAAATGGTCCTACTGCTCATTTCAAATTGTCAAATCTTG 707
| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 598 CCCTTCTTATCATCGGTTTGCCAACTGGTCCTACTGCTCATTTCAAATTGTCTAATCTTG 657
Query 708 TTCTAAGGAAGGATATTAAGAATCACGGAAATCCTACAAGCCATCAACCAGAACTGGTTT 767
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 658 TTCTAAGGAAGGATATTAAGAATCATGGAAATCCTACAAGCCATCAACCAGAACTGGTTT 717
Query 768 TGAATAACTTTACAACGCGTTTAGGGAATCGTGTTGGGAGATTTTTTCAATCACTCTTCC 827
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 718 TGAATAACTTTACAACACGTTTAGGGAATCGTGTTGGGAGGTTTTTTCAATCACTCTTCC 777
Query 828 CTCCGGATCCTAATTTCCGTGGTAGGAGAGTTGTAACATTCCACAACCAGCGTGACTTTA 887
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 778 CTCCGGATCCTAATTTCCGTGGTAGGAGAGTTGTAACATTTCACAACCAGCGTGACTTTA 837
Query 888 TATTTTTCAGACATCACCGTTACATATTTGAGACAAAGGAAAGCAA---GAGTGATAAAG 944
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 838 TATTTTTCAGACATCATCGTTACATATTTGAGACAAAGGAAAGCAAACAGAGTGATAAAG 897
Query 945 GAAAAGA--------A-GAGACAATAAAACCTCGTCTTCAGGAATGCGGTCCTCGATTCA 995
||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GAAAAGATGGTGTTCAAGAGACAATAAAACCTCGTCTTCAGGAATGCGGTCCTCGATTCA 957
Query 996 CGCTTAAGCTAGTTACTCTACAGCATGGAACTTTTGACACCAAAGGTGGAGAATTTGAAT 1055
||||||||||||| ||| |||| |||||||| |||||||||||||| |||||||||||||
Sbjct 958 CGCTTAAGCTAGTCACTTTACAACATGGAACCTTTGACACCAAAGGCGGAGAATTTGAAT 1017
Query 1056 GGGTTCATAAGCCTGAAATGGACACGAGCAGGAGAAGGTTCTTCTTATAAATTCTGCTGT 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1018 GGGTTCATAAGCCTGAAATGGACACGAGCAGGAGAAGGTTCTTCTTATAAATTATGCTGT 1077
Query 1116 CTTCCGAGTT 1125
||||||||||
Sbjct 1078 CTTCCGAGTT 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5