BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01575.1
Length=740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490419 jgi|Araly1|490419|fgenesh2_kg.6__3553__AT4G01575.1 861 0.0
> Ahg490419 jgi|Araly1|490419|fgenesh2_kg.6__3553__AT4G01575.1
Length=695
Score = 861 bits (466), Expect = 0.0
Identities = 650/730 (89%), Gaps = 47/730 (6%)
Strand=Plus/Plus
Query 1 CTTTCAGGAAAAGAGAGGAAACAACGTTTCGTCTTCTCAGATTCTTTACCTTTCTTAAGG 60
|||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1 CTTTCAGGCAAAGAGAGGAAACAACGTTTCTTCTTCTCAGATTCTTTACC-TTCTTAAGG 59
Query 61 -AAAAATCCCAAAAGAGAGAAGATAAAAATCTCGCATTCAGATTTTAGGGTTTCTGACAA 119
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CAAAAA-CCCCAAAGAGAAAAGATAAAAATCTCGCATTCAGATTTTAGGGTTTCTGACAA 118
Query 120 ATTCTCCGATGAAATTCAAGATCCGAATC-TCGGCAATGTCGACAATCTCGCCGTCATTA 178
|||||||| |||||||||||| | || | |||||||||||||| || |||||||||||
Sbjct 119 ATTCTCCGGCGAAATTCAAGAT-CTAAACTTCGGCAATGTCGACGATTTCGCCGTCATTG 177
Query 179 GCCGTAATTGCGTTTCTTTTTCTGATTCTTCTGAATCTATCTTCGGTTTTCGCTGATCCT 238
||||||||| ||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 178 GCCGTAATTTCGTTTCTTTTTCTGACTCTTCTGAATCTATCTTTGGTTATCGCTGATCCT 237
Query 239 TCGACGGA-A--G---GAGGA-GAGATTATTAGGTTACCTTCGGAGAAGATCAACGGTGa 291
|||||||| | | |||| |||| |||||||||||||||||||||||| |||||||
Sbjct 238 TCGACGGAGATTGTTAAAGGAGGAGA-GATTAGGTTACCTTCGGAGAAGATCGACGGTGA 296
Query 292 aaaaaaCAGAGGCGAATTCTGTGAAGGAATTGCTAAACCGGCTTCGTGTCCGGTTCAGTG 351
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AAAAAACAGAGGCGAATTTTGTGAAGGAATTGCTAAACCGGCTTCGTGTCCGGTTCAGTG 356
Query 352 TTTCAGGCCTGATCCGGTTTGCGGTGAAGACAGCGTTACTTACTGGTGCGGTTGTGCAGA 411
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 357 TTTCAGGCCTGATCCGGTTTGCGGTGAGGACAGCGTTACTTACTGGTGCGGTTGTGCAGA 416
Query 412 TGCTTTGTGCCATGGTGTTCGTGTTGTGAAACAAGGAGCTTGTGATGTTGGTAATGGTGT 471
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 417 TGCTTTGTGCCATGGTGTTCGTGTTGTTAAACAAGGAGCTTGTGATGTTGGTAATGGCGT 476
Query 472 TGGTTTGTCTGTTCCTGGACAAGCTCTGCTTTTGATACACATTGTCTGGATGATGCTTCT 531
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGGTTTGTCTGTACCTGGACAAGCTCTGCTTTTGATACACATTGTCTGGATGATGCTTCT 536
Query 532 TGGGTTTTCTATTCTCTTTGGGCTCTTTTGATTTTGGTTCTAATTTCTCTGAATCAAAAC 591
||||||||||||||||||||| |||||||||||| || | ||| |
Sbjct 537 TGGGTTTTCTATTCTCTTTGGCCTCTTTTGATTT-------AA--------A--CAA--C 577
Query 592 AACATATAGAAGATTGTTTAGGTTTTCAGATTGCAAATGACGAATCTTTTTTGTTTATAC 651
| |||||| |||||||||||||||| |||||| | ||| |||||||||| |||||||
Sbjct 578 A---TATAGA-GATTGTTTAGGTTTTCTGATTGCGACTGATGAATCTTTTT-GTTTATAA 632
Query 652 TCTTCtttttttCTTTATATTGCTCTGTATTC-ATA--TTACATTAAAACTATGAGGAAA 708
|||| ||| |||||| | |||||||||| | | |||||||||||||||||||||
Sbjct 633 TCTT-TTT----CTTTAT-T-GCTCTGTATTTGAAAAATTACATTAAAACTATGAGGAAG 685
Query 709 TATTATTATT 718
||| ||||||
Sbjct 686 TATCATTATT 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27257885655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5