BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01590.1
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943584 jgi|Araly1|943584|scaffold_604128.1 636 0.0
Ahg907972 jgi|Araly1|907972|Al_scaffold_0002_1053 468 4e-131
Ahg482652 jgi|Araly1|482652|fgenesh2_kg.4__1712__AT2G36720.1 126 3e-28
> Ahg943584 jgi|Araly1|943584|scaffold_604128.1
Length=563
Score = 636 bits (344), Expect = 0.0
Identities = 411/442 (93%), Gaps = 10/442 (2%)
Strand=Plus/Plus
Query 224 ATGTCTTGGAAAGG-AGCCCGAGGAAAACCAAAAGGCT-ATGGCGGCGATTATGGCAAGC 281
|||||||||| ||| || | ||||||||||| |||| | ||| | ||||||||||||||
Sbjct 21 ATGTCTTGGAGAGGAAG-CAGAGGAAAACCACAAGG-TGGTGGTGCCGATTATGGCAAGC 78
Query 282 CTGAGCCTTTTGTGATTTTCCCTGAAATTACGTTACCAGATCCAAAATCAATCTCAACAG 341
||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 79 CTGAGCCTTTTGTCATTTTCCCTGATATTACGTTACCTGATCCGAAATCAATCTCAACAG 138
Query 342 ACTCGCAATTAGTTCAAAGCTACTTTACTTTCAATAAGTTTTGGAGGAATTCTCCTTATC 401
||||||||||| |||||| |||||||| |||||||||||||||||| |||||||||||||
Sbjct 139 ACTCGCAATTAATTCAAACCTACTTTAGTTTCAATAAGTTTTGGAGAAATTCTCCTTATC 198
Query 402 ACTTAGGCGATGGTGGTGTTTCTAAGAAAGAGAAAGAGAGTTTGAACATTGAGAGGTACT 461
| |||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct 199 ATTTAGGCGA---TGGTGTTTCTAAGAAAGAGAATGAGAGTTTGGACATTGAGAGGTATT 255
Query 462 CAGATTCGTTGAAGCCGAAGATGAAGTCTAATAAGAATGGATCTTTCTTTGATTTTCTTG 521
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 CAGACTCGTTGAAGCCCAAGATGAAGTCTAATAAGAATGGATCTTTCTTTGATTTTCTTG 315
Query 522 TTCTTAGACCTGATAACTTCCCTAAAGAACTTCTTGGAGATACTCGAAGAGAACAACGGC 581
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 316 TTCTTAGACCTGATAACTTCCCTAAAGAACTTCTTGGAGATACTCGAAGAG---AACGTC 372
Query 582 CTGTGAAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGaga 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 CTGTGAAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGAGA 432
Query 642 agcttgaagctaagtttaaggt 663
||||||||||||||||||||||
Sbjct 433 AGCTTGAAGCTAAGTTTAAGGT 454
> Ahg907972 jgi|Araly1|907972|Al_scaffold_0002_1053
Length=327
Score = 468 bits (253), Expect = 4e-131
Identities = 307/332 (92%), Gaps = 8/332 (2%)
Strand=Plus/Plus
Query 498 ATGGATCTTTCTTTGATTTTCTTGTTCTTAGA-CCTGATAACTTCCCTAAAGAACTTCTT 556
||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGGATCTTTCTTTGATTTTCTTCTTCTTAGACCCTGATAACTTCCCTAAACAACTTCTT 60
Query 557 GGAGATACTCGAAGAGAACAACGGCCTGTGAAGAGAGCTAAATGGAGTCAAGAAGCTGAT 616
||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 61 GGAGAAACTCGAAGAG---AACGGCATGTTAAGAGAGCTAAATGGAGTCAAGAAGCTGAT 117
Query 617 TTGCAGAAATTGGATGTGTTTGagaagcttgaagctaagtttaaggttgaaggcaaggaa 676
|||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||||
Sbjct 118 TTGCAGAAATTGGATGTGTTTGAGAAGCTTGAAGCTAAGTCTAATGCTGAAGGTAAGGAA 177
Query 677 gagaaagaagaaggggaagatgatgaagaagttgtggaatcagaaggagaagaaTCTGAT 736
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 GAGAAAGAAGAAGGAGAAGATGATGAAGAAGTTGAGGAATCAGAAGGAGAAGAATCTGAT 237
Query 737 AACGGAGATTATGATCAGAATCAAGACTTTGATGATGATGACGACGATTATAAT-AACGA 795
||| ||||||||||||||||||||||||||||||||||| | |||||||||||| || |
Sbjct 238 AACAGAGATTATGATCAGAATCAAGACTTTGATGATGATAATGACGATTATAATCAA-GC 296
Query 796 GGATGATGGATTAGTT-GAAGAGGTGTATTAA 826
||||||||| | | || |||||||||||||||
Sbjct 297 GGATGATGG-TGATTTTGAAGAGGTGTATTAA 327
> Ahg482652 jgi|Araly1|482652|fgenesh2_kg.4__1712__AT2G36720.1
Length=3506
Score = 126 bits (68), Expect = 3e-28
Identities = 145/179 (81%), Gaps = 18/179 (10%)
Strand=Plus/Plus
Query 10 CTTCTTGGTCCTGCAGATCCATGTATGAAACTTCCCCTGAACCCTAATTTAGC--T---A 64
|||||| |||| |||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 50 CTTCTTCTTCCTCCAGATCCATGTATGAAACCTCCCCTGAACCCTAATTTAGCTATCGAA 109
Query 65 TTCGA-ATT---T-CGATGTTCACTTCTAAATCCTCGATTCGTCTCTGAATAACT-CC-- 116
|| || ||| | ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 110 TTTGAGATTCGATCCGATGCTCACTTCTAAATCCTCGATTCGTCTCTGAATAACAACCCC 169
Query 117 ATCGTAATCGAACTGATT-TCAAGACGGTTCGTTTC-TTTTTCCTCTTATCCCAGATTT 173
|||||||||| || || || | ||||||||| |||||| ||| || ||||||||
Sbjct 170 ATCGTAATCGT-CTAATACTCTTCAATGTTCGTTTCGTTTTTC-TCT-ATGCCAGATTT 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38008548249
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5