BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01600.1
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490418 jgi|Araly1|490418|fgenesh2_kg.6__3552__AT4G01600.1 1158 0.0
> Ahg490418 jgi|Araly1|490418|fgenesh2_kg.6__3552__AT4G01600.1
Length=735
Score = 1158 bits (627), Expect = 0.0
Identities = 701/737 (95%), Gaps = 4/737 (1%)
Strand=Plus/Plus
Query 8 CATCATCATTAGGTCTAATATCATGCGTCCACAATACAAAGACGTGAACGATAAATTAGA 67
||||| ||||| ||||| || |||| |||| |||||||| || |||||||||||||||||
Sbjct 1 CATCACCATTATGTCTACTAGCATGAGTCCGCAATACAAGGATGTGAACGATAAATTAGA 60
Query 68 CTCGACGGCCAAGCACAAAACCAACAGCCATGGCGGTCGTTATGA-TAATCCTTACGTCC 126
||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 61 CTCGACGGCTAAGCACAAAACCAACAGCCATGGCGGTCGTTAT-AGTAATCCTTACGTCC 119
Query 127 ACATTACTAGTCCCACATCAGCTTCTGATAAGAGGTCGAAGGATAAGGTTCTTGAGGTGT 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACATTACTACTCCCACATCAGCTTCTGATAAGAGGTCGAAGGATAAGGTTCTTGAGGTGT 179
Query 187 TGAATCGCTGTGGGAAGAAAGTAGAGGACGCTACTCGCAAAGCGGAAGCATTAGTC-GGA 245
||||||| |||||||||||||||||||||| |||||||||||||||||| |||| | |
Sbjct 180 TGAATCGGTGTGGGAAGAAAGTAGAGGACGTTACTCGCAAAGCGGAAGCTTTAG-CTAGC 238
Query 246 GGTTTAAAAGACCACCTGAAGTTTAGTCCTAGCATAAGTGATGCAGCAATGGCTAGGCTT 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGTTTAAAAGACCACCTGAAGTTTAGTCCTAGCATAAGTGATGCAGCAATGGCTAGGCTT 298
Query 306 TCTCAAGGCACTAAGATGATCGTTGAAGGAGGACCAGAGAGAGTGTTTCAACGAGAGTTT 365
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 299 TCTCAAGGCACTAAAATGATCGTTGAAGGAGGCCCAGAGAGAGTGTTTCAACGAGAGTTT 358
Query 366 GGTGTTTTAGCTGTAGAGAAACTTTTAGATTCGTTTGTTTGCTACATATCGACTACTTCG 425
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GATGTTTTAGCTGCAGAGATACTTTTAGATTCGTTTGTTTGCTACATATCGACTACTTCG 418
Query 426 GGACCAGTGACCGGAGTGATATACATTTCCAACAGAAGAATCGCTTTTTGTAGCGACTAT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGACCAGTGACCGGAGTGATATACATTTCCAACAGAAGAATCGCTTTTTGTAGCGACTAT 478
Query 486 GCCATTCGTCTTCCTTCTTCTGCCGGTGGAAACGGTGTTGCGGCATATTACAAGGTGGTG 545
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 479 GCCATTCGTCTTCCTTCTTCTGTCGGTGGAAACGGTGTTGCGGCATACTACAAGGTGGTG 538
Query 546 ATGGAGTGGGAGAAGATAAGTAGCATTAGTTCATCAACGAACGTGTTGAAGCCAAGTGAG 605
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 539 ATGGAGTGGGAGAAGATACGTAGCATTAGTTCATCAACGAACGTGTTGAAGCCAAGTCAA 598
Query 606 AGATACGTGCATATGGTGACACGAGATGGGTTTGAGTTTTGGTTCATGGGCTTTGTCTCC 665
|| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 599 AGGTATGTGCATATGGTGACACAAGATGGGTTTGAGTTTTGGTTCATGGGCTTTGTCTCC 658
Query 666 TACATCGATGCTTTCAATTGTCTCAACAAAGCTCTCCTCAATTCCCGTTGTAATCATGCC 725
|||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||
Sbjct 659 TACATCGATGCTTTCAATTGTCTCAACAAAGCTCTCCTTAATTCCCGTTGTGGTCGTGCC 718
Query 726 ATGTAATCAAATTCTAA 742
|||||||||||||||||
Sbjct 719 ATGTAATCAAATTCTAA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27715360659
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5