BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01610.1
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490415 jgi|Araly1|490415|fgenesh2_kg.6__3549__AT4G01610.1 2135 0.0
Ahg918880 jgi|Araly1|918880|scaffold_100161.1 791 0.0
> Ahg490415 jgi|Araly1|490415|fgenesh2_kg.6__3549__AT4G01610.1
Length=1368
Score = 2135 bits (1156), Expect = 0.0
Identities = 1262/1314 (96%), Gaps = 3/1314 (0%)
Strand=Plus/Plus
Query 76 AAGATTCATTCTCCCACCATTGAGGTTTAACTTATACAAACAGATCTTTTTGAAATTGGA 135
||||||||||| ||||||| |||||||||||||||||||| ||||| ||||| || ||
Sbjct 52 AAGATTCATTCCCCCACCACTGAGGTTTAACTTATACAAATAGATC-TTTTGGTTTTTGA 110
Query 136 TTCATCTAAGAAGCAGACTCTGTTTTCATGGCTGTTTACAATACCAAACTCTGTTTGGCC 195
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 111 TTCATCGAAGAAGCAAACTCTGTTTTCATGGCTGATTACAATACCAAACTCTGTTTGGCC 170
Query 196 TCTGTTTTCTTGCTCTTAGGGCTTCTCTTGGCTTTTGACTTGAAGGGTATAGAAGCAGAA 255
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 171 TCTGTTTTCTTGCTCTTAGGGCTTCTCTTGGCTTTTGACTTGAAGGGTATAGCAGCAGAA 230
Query 256 AGTCTTACCAAACAGAAACTGGACTCGAAGATACTTCAGGATGAGATTGTGAAGAAAGTC 315
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 231 AATCTTACCAAACAGAAACTGAACTCGAAGATACTTCAGGATGAGATTGTGAAGAAAGTC 290
Query 316 AACGAAAACCCAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT 375
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 AACCAAAATCCAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT 350
Query 376 GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCATTTCTTAGGT 435
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 351 GTTGCAGAGTTTAAGCGCCTTCTCGGTGTTAAACCAACACCGAAGAAGCATTTCTTAGGT 410
Query 436 GTTCCTATTGTGAGCCATGATCCATCTTTGAAGCTACCTAAAGCTTTTGATGCTAGAACT 495
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GTTCCTGTTGTAAGCCATGATCCATCTTTGAAGCTACCTAAAGCTTTTGATGCTAGAACT 470
Query 496 GCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAGATCAGGGACATTGTGGTTCTTGC 555
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 471 GCTTGGCCACAATGCACTAGTATTGGAAAGATCTTAGATCAGGGACATTGTGGTTCTTGC 530
Query 556 TGGGCATTTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATGAAC 615
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 531 TGGGCATTTGGTGCTGTTGAATCACTATCTGATAGATTCTGTATCCAATTTGGCATGAAC 590
Query 616 ATTTCTTTATCAGTAAATGATCTCCTAGCTTGTTGTGGATTCCGTTGTGGTGATGGTTGT 675
|||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 591 ATTTCTCTATCAGTTAATGATCTTCTAGCTTGTTGCGGATTCCGTTGTGGTGATGGTTGT 650
Query 676 GACGGTGGCTATCCAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAA 735
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 651 GACGGTGGCTACCCAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTAACCGAA 710
Query 736 GAGTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGGCATAT 795
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 711 GAGTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGTGAACCGGCATAT 770
Query 796 CCTACACCGAAATGTTCGAGGAAATGCGTTAGCGACAACAAACTATGGAGCGAGTCGAAG 855
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CCTACACCGAGATGTTTGAGGAAATGCGTTAGCGACAACAAACTATGGAGCGAGTCGAAG 830
Query 856 CATTACAGTGTTAGTACATACACTGTGAAATCTAATCCACAAGATATCATGGCAGAGGTT 915
||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct 831 CATTACAGTGTCAGTACATACACTGTTAATTCTAGTCCACAAGATATCATGGCAGAGGTT 890
Query 916 TATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGGATTTTGCTCATTACAAA 975
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 891 TATAAGAATGGACCTGTTGAAGTCTCTTTTACTGTTTATGAGGATTTTGCTCATTACAAA 950
Query 976 TCTGGAGTCTATAAGCACATAACAGGTTCTAACATTGGAGGTCATGCTGTTAAACTTATT 1035
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 951 TCTGGAGTCTATAAGCACATAACAGGATCTAACATTGGAGGTCATGCTGTTAAACTTATT 1010
Query 1036 GGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGTTGATGGCAAATCAATGGAACAGA 1095
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1011 GGTTGGGGAACTAGCAACGAAGGCGAAGATTATTGGTTGATGGCAAATCAATGGAACAGA 1070
Query 1096 GGCTGGGGTGATGATGGTTATTTCATGATAAGGAGAGGAACTAATGAATGTGGAATTGAA 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GGCTGGGGTGATGATGGTTATTTCATGATAAGGAGAGGAACTAATGAATGTGGAATTGAA 1130
Query 1156 GATGAACCAGTAGCTGGTTTGCCTTCAAGCAAGAATGTGTTTAGGGTTGATACCGGTTCG 1215
||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1131 GATGAACCAGTGGCTGGTTTGCCTTCAAGCAGGAATGTGTTTAAGGTTGATACCGGTTCG 1190
Query 1216 AATGATCTTCCGGTTGCATCGGTTTAAGATCAAAGATGGAAATGTTGCATCGGTTTAATA 1275
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 AATGATCTTCCGGTTGCGTCGGTTTAAGATCAAAGATGGAAATGTTGCATCGGTTTAATA 1250
Query 1276 TCAAAGATGAAAAGTTGTTTGTAAGATATATATGTTATGGTTGTTGTTTCCAGTAAAAGA 1335
|| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1251 TCGAAGATGAAAAGTTGTTTGTAAGATATAT--GTTATGGTTGTTGTTTGCAGTAAAAGA 1308
Query 1336 TTCCGGTGACTAGAAATTGTTTTCTGGTTGGCTGTGAAAATGTTATACAAATAA 1389
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 ATCCGGTGACTGGAAATTGTTTTCTGGTTGGCTGTGAAAATGTTATACAAATAA 1362
> Ahg918880 jgi|Araly1|918880|scaffold_100161.1
Length=1122
Score = 791 bits (428), Expect = 0.0
Identities = 824/1014 (81%), Gaps = 32/1014 (3%)
Strand=Plus/Plus
Query 233 ACTTGAAGGGTA-TAGAAGCA-GAAAGTCTTACCAAACAGAAACTGGA-CTCGA-AGATA 288
||||| |||||| | | |||| |||| |||| |||| |||||||| || ||| | |||
Sbjct 91 ACTTGCAGGGTACT-GCAGCAGGAAA-TCTTTCCAAGCAGAAACT-GACCTC-ACTGATT 146
Query 289 CTTCAGGATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCTGCT 348
|||||| |||||||||| ||| ||||||| || || ||||||||||||||||||||| ||
Sbjct 147 CTTCAGAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCTTCT 206
Query 349 ATAAATGATCGATTTTCAAACGCCACTGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAA 408
| |||||||| ||| |||||||||| |||||||||||||||||||| || |||||||||
Sbjct 207 TTGAATGATCGGTTTGCAAACGCCACCGTTGCAGAGTTTAAGCGTCTCCTTGGTGTTAAA 266
Query 409 CCAACACCAAAGA-AGCATTTCTTAGGTGTTCCTATTGTGAGCCATGATCCATCTTTGAA 467
||||||||||||| ||| | ||||||||| |||||||| || |||||| |||||||||
Sbjct 267 CCAACACCAAAGACGGCA-TACTTAGGTGTACCTATTGTAAGACATGATATATCTTTGAA 325
Query 468 GCTACCTAAAGCTTTTGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACAT 527
||| || |||| |||||||||||||| |||||| |||||||||| |||||| || ||
Sbjct 326 GCTTCCAAAAGAATTTGATGCTAGAACAGCTTGGTCACAGTGCACAAGTATTCCAAGGAT 385
Query 528 CTTAGATCAGGGACATTGTGGTTCTTGCTGGGCATTTGGTGCTGTTGAATCACTATCAGA 587
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 386 CTTAGATCAGGGTCATTGTGGTTCTTGCTGGGCATTTGGTGCTGTTGAATCACTGTCCGA 445
Query 588 TAGATTCTGTATCCAATTTGGCATGAACATTTCTTTATCAGTAAATGATCTCCTAGCTTG 647
|| || || ||| ||| | | |||| |||| ||||| | |||||| | |||| ||
Sbjct 446 CAGGTTTTGCATCAAATATAACTTGAATGTTTCCTTATCTGCCAATGATGTTGTAGCATG 505
Query 648 TTGTGGATTCCGTTGTGGTG-ATGGTTGTGACGGTGGCTATCC-AATTGCTGCTTGGCAA 705
||||||||| | ||| ||| | |||||| | ||||| | ||| ||| | ||| ||||
Sbjct 506 TTGTGGATTACTTTGCGGTCTA-GGTTGTAATGGTGGAT-TCCCAATGGGTGCATGGCTG 563
Query 706 TACTTTTCGTAT-AGCGGTGTTGTCACAGAAGAGTGTGATCCATACTTTGATAATACCGG 764
|||||| || | |||||| || || ||||||||||||||||||||||| ||||| ||
Sbjct 564 TACTTTAAATACCA-CGGTGTAGTAACCGAAGAGTGTGATCCATACTTTGACAATACTGG 622
Query 765 ATGCTCTCACCCGGGTTGCGAACC-GGCATATCCTACACCGAAATGT-TCGAGGAAATGC 822
|||||||||||||| || ||||| || || |||||||| |||||| | |||||||||
Sbjct 623 TTGCTCTCACCCGGGATGTGAACCCGGT-TACCCTACACCAAAATGTGT-GAGGAAATGT 680
Query 823 GTTAGCGACAACAAACTATGGAGCGAGTCGAAGCATTACAGTGTTAGTACATACACTGTG 882
|||||||| ||| | |||||| | || || || || || |||| | |||||| |
Sbjct 681 GTTAGCGAAAACCAGCTATGGGGTGAATCAAAACACTATGGTGTCAACGCATACAGAATC 740
Query 883 AAATC-TAATCCACAAGATATCATGGCAGAGGTTTATAAGAATGGACCTGTTGAAGTCT- 940
|| || | | || ||||| || |||||||||||||| ||||| |||||||| || || |
Sbjct 741 AA-TCATGACCCTCAAGACATTATGGCAGAGGTTTACAAGAACGGACCTGTCGAGGT-TG 798
Query 941 CTTTTACCGTTTATGAGGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAG 1000
||||||||||||| ||||| ||||| ||||||||||| ||||| || ||||||||||| |
Sbjct 799 CTTTTACCGTTTACGAGGACTTTGCACATTACAAATCAGGAGTGTACAAGCACATAACGG 858
Query 1001 GTTCTAACATTGGAGGTCATGCTGTTAAACTTATTGGTTGGGGAACTAGCAG-TGAAGGA 1059
|| |||| |||||||||||||||||||| |||||||| ||||||||| | | ||| ||
Sbjct 859 GTACTAAGATTGGAGGTCATGCTGTTAAGCTTATTGGCTGGGGAACTT-CTGATGACGGC 917
Query 1060 GAAGATTATTGGTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGGTTATTTC 1119
||||||||||||||| | ||||||||||||||| || ||||||||||||||||||| |||
Sbjct 918 GAAGATTATTGGTTGCTTGCAAATCAATGGAACCGAAGCTGGGGTGATGATGGTTACTTC 977
Query 1120 ATGATAAGGAGAGGAACTAATGAATGTGGAATTGAAGATGAACCAGTAGCTGGTTTGCCT 1179
| ||| ||||||||||| || |||||||| |||||| | | ||||| ||||| |||
Sbjct 978 AAGATCAGGAGAGGAACGAACGAATGTGGCATTGAACACGGTGTTGTAGCCGGTTTACCT 1037
Query 1180 TCA-AGCAAGAATGTGTTTAGGGTTGATA-CCGGTTC-GAATGATCTTCCGGTT 1230
||| | || ||| ||||||| | | ||| || ||| || |||||||| ||||
Sbjct 1038 TCAGA-CAGGAACGTGTTTAAAGAT-ATAACCACTTCAGA-TGATCTTCTGGTT 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56564013825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5