BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01630.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327627 jgi|Araly1|327627|fgenesh1_pm.C_scaffold_6002847 1199 0.0
> Ahg327627 jgi|Araly1|327627|fgenesh1_pm.C_scaffold_6002847
Length=768
Score = 1199 bits (649), Expect = 0.0
Identities = 728/767 (95%), Gaps = 2/767 (0%)
Strand=Plus/Plus
Query 1 ATGACGAAGATTTTCTCTCTATTGGTCGCAATGATCTTCTCCACAATGTTCTTCATGAAG 60
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1 ATGACGAAGATTTTCTCTCTATTGGTCGCAATGATCTTTTCCATAATGTTCTTCATGAAG 60
Query 61 ATCAGCTCAGTTTCTGCTGGTTGGTTGCAAGCTCATGCGACCTTTTATGGCGGAAGTGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCAGCTCAGTTTCTGCTGGTTGGTTGCAAGCTCATGCGACCTTTTATGGCGGAAGTGAT 120
Query 121 GCCTCTGGTACAATGGGTGGAGCTTGTGGTTATGGAAACCTATACACAGACGGCTACAAG 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GCTTCTGGTACAATGGGTGGAGCTTGTGGTTATGGAAACCTATACACAGACGGTTACAAG 180
Query 181 ACAAACACCGCGGCGTTAAGCACGGCCCTGTTCAACGACGGCAAGTCATGCGGTGGATGT 240
|||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ACAAACACAGCGGCGCTAAGCACGGCACTGTTCAACGACGGCAAGTCATGCGGTGGATGT 240
Query 241 TACCAAATCTTGTGTGATGCAACCAAAGTACCACAATGGTGTCTTAAAGGCAAATCAATC 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TACCAAATCTTGTGTGATGCAACCAAAGTACCACAATGGTGTCTTAAAGGAAAATCAATC 300
Query 301 ACTATCACAGCTACAAACTTCTGTCCACCGAACTTTGCTCAGGCAAGCGACAATGGAGGT 360
|| |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 301 ACAATCACAGCCACAAACTTCTGTCCACCAAACTTTGCTCAGGCAAGCGACGATGGAGGA 360
Query 361 TGGTGCAACCCACCGAGACCTCA-TTTCGACATGGCTCAGCCTGCGTTTCTCACCATCGC 419
|||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 361 TGGTGCAACCCACCAAGACCTCACTTT-GACATGGCTCAGCCTGCGTTTCTAACCATCGC 419
Query 420 TAAGTACAAAGCTGGAATCGTCCCCATTCTTTACAAAAAAGTTGGATGTAGAAGAAGCGG 479
||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 420 TAAGTACAAAGCTGGTATCGTTCCCATTCTCTACAAAAGGGTTGGATGTAGAAGAAGCGG 479
Query 480 AGGGATGAGATTTACAATAAACGGTAGAAACTATTTCGAGCTTGTTCTCATCTCAAACGT 539
||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||||
Sbjct 480 AGGGATGAGATTTACGATCAATGGTAGAAACTATTTCGAGCTTGTTCTCATATCAAACGT 539
Query 540 AGCAGGAGGGGGTGAGATCTCTAAAGTTTGGATCAAAGGATCTAAGAGCAACAAATGGGA 599
|||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 540 AGCAGGAGCTGGTGAGATCTCTAAAGTTTGGATTAAAGGCTCTAAGAGCAACAAATGGGA 599
Query 600 GACAATGTCAAGAAATTGGGGAGCTAATTATCAGAGTAATACTTACCTTAATGGTCAATC 659
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 600 GACAATGTCAAGAAATTGGGGAGCTAATTATCAGAGCAACACTTACCTTAATGGACAATC 659
Query 660 TCTATCTTTCAAAGTTCAACTTAGTGATGGAAGTATCAAAGCAGCTCTCAACGTTGTTCC 719
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 660 TCTCTCTTTCAAAGTTCAACTCAGTGATGGAAGAATCAAAGCAGCTCTCAACGTTGTTCC 719
Query 720 TTCGAATTGGCGGTTTGGTCAGAGCTTCAAGAGCAACGTTAACTTCT 766
||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 720 TTCGAATTGGCAGTTTGGTCAGAGCTTCAAGAGCAACATCAACTTCT 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5