BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01650.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490412 jgi|Araly1|490412|fgenesh2_kg.6__3546__AT4G01650.1 1147 0.0
> Ahg490412 jgi|Araly1|490412|fgenesh2_kg.6__3546__AT4G01650.1
Length=879
Score = 1147 bits (621), Expect = 0.0
Identities = 803/887 (91%), Gaps = 28/887 (3%)
Strand=Plus/Plus
Query 1 ATGCAATCTTCTCCGATCTTATTAGACTTCTCTTCCGCCTTTCACCACCCACGCGCCGCC 60
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGCAATCTTCTCCCATCTTATTAGACTTCTCCTCCGCCTTTCACCACCCACGCGCCGCC 60
Query 61 GCGTTAGCCACCACTTCCGGCC-TAACGAATTCACACTCTCCGACTAAAAAATATCGCCT 119
|| ||||||||||| ||| ||| |||||| |||||| |||||||||||||| | || ||
Sbjct 61 GCTTTAGCCACCACCTCC-GCCGTAACGATTTCACAGTCTCCGACTAAAAATTTTC-ACT 118
Query 120 -GATAACCTCTTTTTCGCCTTCCTCGACA--C-T-G---C-T-AGCTTCTTCTCGTAGAT 169
| || |||||||||| |||||||||||| | | | | | |||||||||||||||
Sbjct 119 CGCTATCCTCTTTTTCACCTTCCTCGACACTCTTAGCTTCTTCTTCTTCTTCTCGTAGAT 178
Query 170 GTTTCACCTGCCGATTTGGCGACAGTTCTCCGCGATTCAATTCGAA-CG-AG--G--A-T 222
||||||||||||||||||||||| ||||| |||| ||| |||| || || || | | |
Sbjct 179 GTTTCACCTGCCGATTTGGCGACGGTTCTTCGCGGTTCGATTC-AAGCGAAGATGAAACT 237
Query 223 GAAACTGAAACTGAAACTGATGATGAAGATGATTATTGTTTGACAGATGGGAAAACAGAG 282
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 GAAATTGAAATTGAAATTGATGATGAAGATGATTATTGTTTGACAGATGGGAAGACAGAG 297
Query 283 GAATTGGTAGTAGGAGACGATGGTGTTCTTATAGAGTTGAAGAAGCTCGAGAAGAGCTCG 342
||||| | ||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 298 GAATT-G--GTAGGCGACGATGGTGTTCTTATAGAGGTGAAGAAACTCGAGAAGAGCTCT 354
Query 343 CGTCGAATTCGTTCGAAGATTGGAATGGAAGCGAGTCTCGATTCCGTTTGGAGCGTATTG 402
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 355 CGTCGAATTCGTTCGAAGATTGGAATGGAAGCGAGTCTCGATTCCGTTTGGAGTGTATTG 414
Query 403 ACTGATTACGAGAAGCTATCTGATTTCATTCCAGGTCTTGTTGTTAGCGAATTGGTTGAG 462
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 415 ACTGATTACGAGAAGTTATCTGATTTCATTCCAGGACTCGTTGTTAGCGAATTGGTTGAG 474
Query 463 AAAGAAGGCAATCGTGTTCGTCTTTTCCAGATGGGACAGCAGAACTTAGCA-TTGGGACT 521
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 475 AAAGAAGGCAATCGTGTTCGTCTTTTCCAGATGGGACAGCAGAATTTAGCACTTGGT-CT 533
Query 522 TAAGTTCAATGCCAAAGCTGTTCTAGATTGTTACGAGAAAGAGCTTGAGGTTCTGCCACA 581
|||||||||||||||||||||| ||||||||| ||||||||||||||| || |||||||
Sbjct 534 TAAGTTCAATGCCAAAGCTGTTTTAGATTGTTTTGAGAAAGAGCTTGAGATTTTGCCACA 593
Query 582 TGGGAGGAGACGTGAGATTGATTTTAAGATGGTTGAAGGAGATTTTCAGTTGTTTGAAGG 641
||||||||||||||| || || ||||||||||| ||||| ||||| || |||||||||||
Sbjct 594 TGGGAGGAGACGTGAAATCGACTTTAAGATGGTCGAAGGCGATTTCCAATTGTTTGAAGG 653
Query 642 CAAATGGTCCATCGAACAACTCGACAAAGGGATTCATGGGGAGGCTTTGGATTTACAGTT 701
||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 654 CAAATGGTCTATCGAACAACTCGACAAAGGGATTCATGGGGAGTCTTTGGATTCACAGTT 713
Query 702 TAAAGATTTTCGGACGACGCTTGCATACACGGTGGATGTAAAACCGAAGATGTGGTTACC 761
|||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 714 TAAAGATTTTCGGACGACGCTTGCATACACGGCGGATGTAAAACCAAAAATGTGGTTACC 773
Query 762 GGTGCGGCTAGTCGAAGGAAGATTGTGCAAAGAGAT-AAGAACTAATCTGATGAGTATCC 820
||||||||||| ||||||||||||||||||||||| || ||| ||||| | ||||||||
Sbjct 774 AGTGCGGCTAGTTGAAGGAAGATTGTGCAAAGAGATTAA-AACAAATCTTACGAGTATCC 832
Query 821 GAGATGCAGCACAGAAAGTTATTGAAGGTGTTATTCATGATCTTTGA 867
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 833 GAGATGCAGCTCAGAAAGTTATTGAAGGTGTTATTCATGATCTTTGA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5